Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G117200 Prunus persica HOM05D006525 ORTHO05D007845 4.5e-141 504.6 259 100.0
CANSAT21G0126 Cannabis sativa HOM05D006525 ORTHO05D007845 2.1e-106 389.4 238 83.2
FAN18G4350 Fragaria x ananassa HOM05D006525 ORTHO05D007845 3.4e-104 382.1 236 82.2
MD14G1123300 Malus domestica HOM05D006525 ORTHO05D007845 3.7e-103 378.6 234 82.1
FAN13G2324 Fragaria x ananassa HOM05D006525 ORTHO05D007845 1.4e-102 376.7 236 80.1
FAN08G2482 Fragaria x ananassa HOM05D000027 ORTHO05D007845 1.9e-99 366.3 216 82.9
RcHm_v2.0_Chr7g0195151 Rosa chinensis HOM05D006525 ORTHO05D007845 1.6e-98 363.2 206 85.4
Ciclev10022095m.g Citrus clementina HOM05D006525 ORTHO05D007845 1.1e-97 360.5 233 78.5
Thecc.03G295800 Theobroma cacao HOM05D006525 ORTHO05D007845 1.1e-97 360.5 237 78.1
QL02p030956 Quercus lobata HOM05D006525 ORTHO05D007845 4.0e-97 358.6 237 77.2
EL10Ac5g12902 Beta vulgaris HOM05D006525 ORTHO05D007845 9.9e-96 354.0 237 72.2
Duzib068G0461 Durio zibethinus HOM05D006525 ORTHO05D007845 1.7e-95 353.2 234 74.4
MELO3C005745.2 Cucumis melo HOM05D006525 ORTHO05D007845 6.4e-95 351.3 235 74.5
ClCG01G001950 Citrullus lanatus HOM05D006525 ORTHO05D007845 1.1e-94 350.5 237 74.3
CsaV3_5G002090 Cucumis sativus L. HOM05D006525 ORTHO05D007845 1.1e-94 350.5 235 74.5
Cpa.g.sc79.53 Carica papaya HOM05D006525 ORTHO05D007845 2.4e-94 349.4 230 74.8
Sed0028109 Sechium edule HOM05D006525 ORTHO05D007845 3.2e-94 349.0 235 74.0
Haze_08630 Corylus avellana HOM05D006525 ORTHO05D007845 1.2e-93 347.1 227 74.9
CiPaw.11G122700 Carya illinoinensis HOM05D006525 ORTHO05D007845 4.6e-93 345.1 222 75.2
TWI15G0402 Tripterygium wilfordii HOM05D006525 ORTHO05D007845 1.0e-92 344.0 241 72.2
PGR031G0465 Punica granatum HOM05D006525 ORTHO05D007845 2.3e-92 342.8 231 74.5
Dinv37543 Davidia involucrata HOM05D006525 ORTHO05D007845 3.9e-92 342.0 241 70.5
Cfa022937 Carpinus fangiana HOM05D006525 ORTHO05D007845 5.6e-91 338.2 205 79.5
Lj4g0012415 Lotus japonicus HOM05D006525 ORTHO05D007845 7.3e-91 337.8 234 70.9
Gorai.007G025600 Gossypium raimondii HOM05D006525 ORTHO05D007845 1.2e-90 337.0 234 72.2
Sp7g00260 Schrenkiella parvula HOM05D006525 ORTHO05D007845 3.6e-90 335.5 234 69.2
Medtr8g099380 Medicago truncatula HOM05D006525 ORTHO05D007845 1.1e-89 334.0 234 71.8
Gohir.D11G024000 Gossypium hirsutum HOM05D006525 ORTHO05D007845 1.4e-89 333.6 234 71.4
Atru.chr9.2016 Acer truncatum HOM05D006525 ORTHO05D007845 2.4e-89 332.8 203 79.3
Aqoxy5G04177 Aquilegia oxysepala HOM05D006525 ORTHO05D007845 3.1e-89 332.4 237 68.4
Gohir.A11G024300 Gossypium hirsutum HOM05D006525 ORTHO05D007845 2.6e-88 329.3 234 72.2
THA.LOC104817658 Tarenaya hassleriana HOM05D006525 ORTHO05D007845 2.6e-88 329.3 234 71.4
AUR62019825 Chenopodium quinoa HOM05D006525 ORTHO05D007845 3.4e-88 328.9 234 69.2
Potri.001G092800 Populus trichocarpa HOM05D006525 ORTHO05D007845 1.7e-87 326.6 234 70.9
Hma1.2p1_0359F.1_g135310 Hydrangea macrophylla HOM05D006525 ORTHO05D007845 2.2e-87 326.2 198 77.8
CSS0006968 Camellia sinensis var. sinensis HOM05D006525 ORTHO05D007845 4.9e-87 325.1 203 77.8
Manes.01G047000 Manihot esculenta HOM05D006525 ORTHO05D007845 1.9e-86 323.2 198 78.8
Psat7g027440 Pisum sativum HOM05D006525 ORTHO05D007845 1.9e-86 323.2 234 69.7
vmacro11437 Vaccinium macrocarpon HOM05D006525 ORTHO05D007845 1.9e-86 323.2 209 74.2
Hund11396 Selenicereus undatus HOM05D006525 ORTHO05D007845 2.4e-86 322.8 231 71.0
GSVIVG01019512001 Vitis vinifera HOM05D006525 ORTHO05D007845 2.4e-86 322.8 202 75.7
Lalb_Chr16g0390611 Lupinus albus HOM05D006525 ORTHO05D007845 3.2e-86 322.4 232 71.6
Actinidia22144 Actinidia chinensis HOM05D006525 ORTHO05D007845 5.4e-86 321.6 215 73.5
Ca_17485_v3 Cicer arietinum L. HOM05D006525 ORTHO05D007845 7.1e-86 321.2 234 67.9
Phvul.002G297400 Phaseolus vulgaris HOM05D006525 ORTHO05D007845 9.3e-86 320.9 234 69.7
MSTRG.11933 Avicennia marina HOM05D006525 ORTHO05D007845 1.2e-85 320.5 234 66.2
Eucgr.D01725 Eucalyptus grandis HOM05D006525 ORTHO05D007845 1.2e-85 320.5 206 76.2
DCAR_027712 Daucus carota HOM05D006525 ORTHO05D007845 3.5e-85 318.9 232 67.7
Sopen08g030430 Solanum pennellii HOM05D006525 ORTHO05D007845 3.5e-85 318.9 245 68.2
Rhsim02G0241900 Rhododendron simsii HOM05D006525 ORTHO05D007845 4.6e-85 318.5 199 77.4
Sabra01G0069100 Salix brachista HOM05D006525 ORTHO05D007845 1.0e-84 317.4 234 67.9
PGSC0003DMG400012159 Solanum tuberosum HOM05D006525 ORTHO05D007845 1.0e-84 317.4 245 67.3
Aa31LG9G310 Aethionema arabicum HOM05D006525 ORTHO05D007845 1.3e-84 317.0 237 66.7
Glyma.08G022100 Glycine max HOM05D006525 ORTHO05D007845 3.9e-84 315.5 234 69.7
CAN.G532.106 Capsicum annuum HOM05D006525 ORTHO05D007845 5.1e-84 315.1 206 73.8
VMungo0251G1352 Vigna mungo HOM05D006525 ORTHO05D007845 1.1e-83 313.9 231 68.0
BraA07t29782Z Brassica rapa HOM05D006525 ORTHO05D007845 1.9e-83 313.2 228 68.0
Migut.A00669 Erythranthe guttata HOM05D006525 ORTHO05D007845 1.9e-83 313.2 190 78.4
SalBow1G4596 Salvia bowleyana HOM05D006525 ORTHO05D007845 1.9e-83 313.2 245 64.9
A07p20960 Brassica napus HOM05D006525 ORTHO05D007845 7.3e-83 311.2 228 67.1
Oeu009950.2 Olea europaea HOM05D006525 ORTHO05D007845 1.6e-82 310.1 284 58.8
SalBow1G2372 Salvia bowleyana HOM05D006525 ORTHO05D007845 2.1e-82 309.7 243 64.6
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 4.8e-82 308.5 235 66.4
arahy.Tifrunner.gnm1.ann1.3UM0RM Arachis hypogaea HOM05D006525 ORTHO05D007845 8.1e-82 307.8 235 67.7
MBI07_g34229_MAGBIO Magnolia biondii HOM05D006525 ORTHO05D007845 1.1e-81 307.4 206 72.8
C06p20270 Brassica napus HOM05D006525 ORTHO05D007845 1.4e-81 307.0 232 65.5
BolC6t37207H Brassica oleracea HOM05D006525 ORTHO05D007845 1.4e-81 307.0 232 65.5
Cc08_g15920 Coffea canephora HOM05D006525 ORTHO05D007845 2.4e-81 306.2 229 64.6
Os05g0214400 Oryza sativa ssp. japonica HOM05D006525 ORTHO05D007845 5.3e-81 305.1 202 71.3
Ah.12g052450 Amaranthus hybridus HOM05D006525 ORTHO05D007845 2.0e-80 303.1 255 62.4
Carub.0007s3351 Capsella rubella HOM05D006525 ORTHO05D007845 2.6e-80 302.8 231 64.5
BcaB02g07875 Brassica carinata HOM05D006525 ORTHO05D007845 4.5e-80 302.0 232 64.7
HPP92_000617 Vanilla planifolia HOM05D006525 ORTHO05D007845 4.5e-80 302.0 229 65.1
BcaC08g44560 Brassica carinata HOM05D006525 ORTHO05D007845 5.8e-80 301.6 232 64.7
AL7G47380 Arabidopsis lyrata HOM05D006525 ORTHO05D007845 1.7e-79 300.1 232 64.2
CARHR212710 Cardamine hirsuta HOM05D006525 ORTHO05D007845 2.2e-79 299.7 221 66.1
AT5G41850 Arabidopsis thaliana HOM05D006525 ORTHO05D007845 4.9e-79 298.5 205 68.3
arahy.Tifrunner.gnm1.ann1.56CREW Arachis hypogaea HOM05D006525 ORTHO05D007845 6.4e-79 298.1 245 64.9
TAR636G1454 Trochodendron aralioides HOM05D006525 ORTHO05D007845 1.4e-78 297.0 184 78.3
PSO384G4490 Papaver somniferum HOM05D006525 ORTHO05D007845 1.2e-77 293.9 233 64.8
unitig_88.g27636 Utricularia gibba HOM05D006525 ORTHO05D007845 6.0e-77 291.6 249 59.8
Zm00001eb283820 Zea mays HOM05D006525 ORTHO05D007845 2.3e-76 289.7 230 63.5
HanXRQChr13g0415031 Helianthus annuus HOM05D006525 ORTHO05D007845 1.5e-75 287.0 240 61.7
AUR62010826 Chenopodium quinoa HOM05D006525 ORTHO05D007845 3.3e-75 285.8 238 62.6
HanXRQChr17g0535171 Helianthus annuus HOM05D006525 ORTHO05D007845 2.1e-74 283.1 209 64.1
MBI07_g34230_MAGBIO Magnolia biondii HOM05D006525 ORTHO05D007845 2.8e-74 282.7 180 75.6
ECA240G1071 Erigeron canadensis HOM05D006525 ORTHO05D007845 2.4e-73 279.6 200 67.5
PSO339G1283 Papaver somniferum HOM05D006525 ORTHO05D007845 2.4e-73 279.6 251 59.4
SGA_v2.0_scaffold96G28973 Striga asiatica HOM05D006525 ORTHO05D007845 2.4e-73 279.6 328 49.4
ECA246G0134 Erigeron canadensis HOM05D006525 ORTHO05D007845 1.5e-72 276.9 207 63.3
Thhalv10028271m.g Eutrema salsugineum HOM05D006525 ORTHO05D007845 2.2e-71 273.1 230 59.6
Nitab4.5_0010144g0010 Nicotiana tabacum HOM05D006525 ORTHO05D007845 3.2e-70 269.2 236 61.4
Nitab4.5_0000223g0360 Nicotiana tabacum HOM05D006525 ORTHO05D007845 7.1e-70 268.1 175 74.9
SMO290G0001 Selaginella moellendorffii HOM05D006525 ORTHO05D007845 4.3e-67 258.8 202 60.4
Lsat_1_v5_gn_3_10281 Lactuca sativa HOM05D006525 ORTHO05D007845 3.7e-66 255.8 247 54.3
Nn3g19049 Nelumbo nucifera HOM05D006525 ORTHO05D007845 9.0e-65 251.1 164 76.2
HanXRQChr06g0166551 Helianthus annuus HOM05D006525 ORTHO05D007845 5.8e-64 248.4 237 54.0
Lsat_1_v5_gn_6_84361 Lactuca sativa HOM05D006525 ORTHO05D007845 5.8e-64 248.4 180 66.7
Lj2A170G33 Lonicera japonica HOM05D006525 ORTHO05D007845 2.9e-63 246.1 160 73.1
TPR.G3436 Trifolium pratense HOM05D006525 ORTHO05D007845 1.9e-59 233.4 168 70.2
FvH4_5g04410 Fragaria vesca HOM05D006525 ORTHO05D007845 1.8e-57 226.9 144 80.6
CBR_g29721 Chara braunii HOM05D006525 ORTHO05D007845 9.0e-57 224.6 201 52.7
MBI07_g27263_MAGBIO Magnolia biondii HOM05D006525 ORTHO05D007845 1.3e-50 204.1 184 59.8
CSS0025848 Camellia sinensis var. sinensis HOM05D006525 ORTHO05D007845 1.0e-47 194.5 162 64.2
Sc22g0005060 Simmondsia chinensis HOM05D006525 ORTHO05D007845 1.1e-46 191.0 136 69.9
Pp3c22_1320 Physcomitrium patens HOM05D006525 ORTHO05D007845 1.9e-46 190.3 167 55.1
Hma1.2p1_0359F.1_g135320 Hydrangea macrophylla HOM05D006525 ORTHO05D007845 4.1e-41 172.6 112 73.2
Glyma.05G216200 Glycine max HOM05D006525 ORTHO05D007845 7.0e-41 171.8 111 75.7
Solyc08g082150.2 Solanum lycopersicum HOM05D006525 ORTHO05D007845 4.2e-38 162.5 129 65.9
Hma1.2p1_0359F.1_g135300 Hydrangea macrophylla HOM05D006525 ORTHO05D007845 2.1e-37 160.2 87 83.9
MD06G1104500 Malus domestica HOM05D006525 ORTHO05D007845 8.2e-34 148.3 115 69.6
Peaxi162Scf00074g01026 Petunia axillaris HOM05D006525 ORTHO05D007845 2.1e-29 133.7 123 58.5
CSS0015265 Camellia sinensis var. sinensis HOM05D006525 ORTHO05D007845 3.6e-29 132.9 91 70.3
SEGI_26681 Sequoiadendron giganteum HOM05D006525 ORTHO05D007845 3.0e-28 129.8 87 73.6
BcaNung06853 Brassica carinata HOM05D006525 ORTHO05D007845 8.8e-28 128.3 84 72.6
ATR0589G090 Amborella trichopoda HOM05D006525 ORTHO05D007845 7.5e-27 125.2 87 69.0
TPR.G20444 Trifolium pratense HOM05D006525 ORTHO05D007845 1.4e-25 120.9 84 73.8
MD06G1104600 Malus domestica HOM05D006525 ORTHO05D007845 3.1e-25 119.8 70 81.4
Pp3c22_17300 Physcomitrium patens HOM05D006525 ORTHO05D007845 6.5e-23 112.1 141 46.1
HanXRQChr03g0061741 Helianthus annuus HOM05D006525 ORTHO05D007845 1.3e-18 97.8 65 67.7
AagrBONN_evm.TU.Sc2ySwM_368.643 Anthoceros agrestis HOM05D006525 ORTHO05D007845 2.8e-18 96.7 79 57.0
Sc22g0005070 Simmondsia chinensis HOM05D006525 ORTHO05D007845 4.5e-16 89.4 67 59.7
PGSC0003DMG400026824 Solanum tuberosum HOM05D006525 ORTHO05D007845 5.9e-16 89.0 72 59.7
Lalb_Chr09g0332581 Lupinus albus HOM05D006525 ORTHO05D007845 3.4e-11 73.2 52 71.2
Gohir.A06G127902 Gossypium hirsutum HOM05D049481 ORTHO05D047822 5.6e-06 55.8 54 59.3


User provided reference genes

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