Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 9.2e-51 203.4 110 100.0
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 1.2e-13 80.1 95 47.4
FAN13G1599 Fragaria x ananassa HOM05D017100 ORTHO05D008036 9.9e-13 77.0 88 47.7
FAN18G2618 Fragaria x ananassa HOM05D017100 ORTHO05D008036 9.9e-13 77.0 88 47.7
RcHm_v2.0_Chr7g0195411 Rosa chinensis HOM05D017100 ORTHO05D008036 1.7e-12 76.3 86 50.0
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 3.8e-12 75.1 54 61.1
FAN04G1004 Fragaria x ananassa HOM05D017100 ORTHO05D008036 1.1e-11 73.6 89 46.1
FAN04G2843 Fragaria x ananassa HOM05D017100 ORTHO05D008036 1.1e-11 73.6 89 46.1
FAN08G3467 Fragaria x ananassa HOM05D017100 ORTHO05D008036 1.4e-11 73.2 88 44.3
FvH4_5g04090 Fragaria vesca HOM05D017100 ORTHO05D008036 4.2e-11 71.6 88 45.5
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 9.3e-11 70.5 35 82.9
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.2e-10 70.1 112 38.4
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.6e-10 69.7 124 38.7
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.1e-10 69.3 122 38.5
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 3.5e-10 68.6 109 38.5
FAN18G0435 Fragaria x ananassa HOM05D017100 ORTHO05D008036 4.6e-10 68.2 86 44.2
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 4.6e-10 68.2 103 38.8
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 4.6e-10 68.2 91 38.5
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 7.8e-10 67.4 110 40.0
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 7.8e-10 67.4 120 38.3
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.0e-09 67.0 106 40.6
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.3e-09 66.6 51 54.9
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.7e-09 66.2 114 36.8
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.9e-09 65.1 121 34.7
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 3.9e-09 65.1 86 41.9
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.1e-09 64.7 106 39.6
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 5.1e-09 64.7 113 38.1
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 5.1e-09 64.7 108 35.2
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 8.7e-09 63.9 84 41.7
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 8.7e-09 63.9 31 74.2
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 1.1e-08 63.5 78 43.6
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.5e-08 63.2 96 41.7
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.9e-08 62.8 119 33.6
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 1.9e-08 62.8 35 71.4
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 1.9e-08 62.8 118 33.1
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.5e-08 62.4 34 73.5
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 2.5e-08 62.4 113 36.3
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 2.5e-08 62.4 32 78.1
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 2.5e-08 62.4 32 78.1
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 2.5e-08 62.4 32 78.1
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 4.3e-08 61.6 33 69.7
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 4.3e-08 61.6 60 48.3
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 4.3e-08 61.6 87 37.9
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 5.6e-08 61.2 108 36.1
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 5.6e-08 61.2 33 63.6
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 7.3e-08 60.8 49 49.0
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 7.3e-08 60.8 92 38.0
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 7.3e-08 60.8 105 38.1
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 9.6e-08 60.5 46 58.7
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 9.6e-08 60.5 95 40.0
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 9.6e-08 60.5 95 40.0
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.3e-07 60.1 42 59.5
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.3e-07 60.1 42 59.5
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.3e-07 60.1 32 71.9
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.6e-07 59.7 103 38.8
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 2.1e-07 59.3 30 76.7
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 2.1e-07 59.3 30 73.3
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 2.1e-07 59.3 32 75.0
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 2.8e-07 58.9 31 67.7
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 2.8e-07 58.9 36 58.3
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 3.6e-07 58.5 43 60.5
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 6.2e-07 57.8 32 68.8
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 8.1e-07 57.4 32 68.8
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 1.1e-06 57.0 86 34.9
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.1e-06 57.0 91 33.0
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 1.1e-06 57.0 29 72.4
SGA_v2.0_scaffold11G05722 Striga asiatica HOM05D007041 ORTHO05D008036 1.1e-06 57.0 36 63.9
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 1.1e-06 57.0 91 35.2
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 1.4e-06 56.6 31 64.5
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 1.4e-06 56.6 32 68.8
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 1.8e-06 56.2 32 62.5
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 1.8e-06 56.2 32 62.5
Thhalv10001747m.g Eutrema salsugineum HOM05D010682 ORTHO05D012785 1.8e-06 56.2 48 56.2
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 1.8e-06 56.2 96 38.5
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 2.4e-06 55.8 29 69.0
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 3.1e-06 55.5 40 57.5
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 3.1e-06 55.5 84 34.5
Zm00001eb310140 Zea mays HOM05D007041 ORTHO05D008036 3.1e-06 55.5 39 56.4
Zm00001eb441140 Zea mays HOM05D007041 ORTHO05D008036 3.1e-06 55.5 39 56.4
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 4.0e-06 55.1 29 72.4
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 4.0e-06 55.1 29 72.4
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 4.0e-06 55.1 29 72.4
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 4.0e-06 55.1 29 72.4
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 4.0e-06 55.1 45 57.8
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 4.0e-06 55.1 29 72.4
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 4.0e-06 55.1 29 72.4
HPP92_005512 Vanilla planifolia HOM05D007041 ORTHO05D008036 4.0e-06 55.1 68 42.6
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 5.3e-06 54.7 101 36.6
Sabra01G0069900 Salix brachista HOM05D007041 ORTHO05D008036 5.3e-06 54.7 86 33.7
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 6.9e-06 54.3 29 72.4
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 6.9e-06 54.3 29 72.4
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 6.9e-06 54.3 91 30.8
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 9.0e-06 53.9 29 72.4
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 9.0e-06 53.9 29 72.4
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 9.0e-06 53.9 29 72.4


User provided reference genes

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