Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.2e-299 1032.3 512 100.0
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 2.4e-258 895.2 512 87.5
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 8.4e-256 886.7 512 86.1
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.0e-254 880.6 512 85.5
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 3.9e-253 877.9 512 85.7
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.6e-253 877.1 512 85.4
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.8e-250 869.0 520 84.2
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.8e-243 845.1 514 82.7
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.8e-235 817.8 512 80.5
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.8e-235 817.8 512 80.5
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 5.0e-224 781.2 509 75.6
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 4.6e-222 774.6 511 75.7
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 2.3e-221 772.3 510 75.3
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 6.3e-219 764.2 515 73.6
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 1.8e-218 762.7 490 74.9
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 8.5e-216 753.8 516 72.9
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 8.5e-216 753.8 514 73.2
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.4e-215 753.1 511 75.1
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.9e-215 752.7 511 73.6
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 2.5e-215 752.3 514 73.7
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 7.2e-215 750.7 507 74.0
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 2.0e-212 742.7 510 72.5
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 6.9e-210 734.2 454 80.2
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 2.0e-209 732.6 510 72.0
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.0e-208 730.3 494 72.1
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.3e-208 729.9 523 69.4
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 1.7e-208 729.6 496 72.4
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.2e-208 729.2 496 72.4
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 2.2e-208 729.2 515 69.5
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 3.8e-208 728.4 490 73.9
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 5.0e-208 728.0 511 72.6
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.1e-207 726.9 495 71.9
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 4.2e-207 724.9 510 72.2
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 5.5e-207 724.5 498 71.5
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 7.2e-207 724.2 510 72.7
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.6e-206 723.0 513 73.1
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.4e-205 719.9 513 70.4
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.8e-205 719.5 542 69.0
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.8e-205 719.5 591 63.8
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.9e-205 718.4 500 71.6
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 6.7e-205 717.6 498 70.3
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.1e-204 716.8 575 65.0
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 2.6e-204 715.7 494 70.6
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 3.3e-204 715.3 503 69.6
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.4e-204 714.9 500 71.0
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.2e-203 712.6 498 69.1
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 3.7e-203 711.8 515 69.7
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 3.7e-203 711.8 496 70.0
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 3.1e-202 708.8 512 68.2
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 7.0e-202 707.6 506 68.4
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 2.6e-201 705.7 513 68.0
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 4.5e-201 704.9 494 68.8
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 6.5e-200 701.0 512 69.3
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 4.2e-199 698.4 515 67.0
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 2.1e-198 696.0 497 67.8
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 1.0e-197 693.7 512 67.8
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 1.8e-197 693.0 498 67.5
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 3.0e-197 692.2 512 67.2
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 1.5e-196 689.9 515 67.0
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 7.5e-196 687.6 512 67.0
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 1.7e-195 686.4 509 67.4
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 4.1e-194 681.8 522 66.5
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 9.1e-194 680.6 498 68.1
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 1.2e-193 680.2 512 66.6
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 4.5e-193 678.3 506 67.2
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 7.7e-193 677.6 511 68.1
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 2.9e-192 675.6 457 72.0
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 3.8e-192 675.2 515 66.2
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.9e-191 672.9 548 63.0
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 2.1e-190 669.5 478 67.6
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 2.1e-190 669.5 486 71.0
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 2.7e-190 669.1 510 66.1
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.0e-189 667.2 510 66.1
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 1.8e-189 666.4 512 64.3
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 5.2e-189 664.8 510 65.5
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 6.8e-189 664.5 510 65.5
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 6.8e-189 664.5 510 65.5
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 6.8e-189 664.5 510 65.5
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 1.5e-188 663.3 510 65.5
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 1.5e-188 663.3 510 65.5
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 2.6e-188 662.5 512 63.5
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 3.7e-187 658.7 439 73.6
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 4.8e-187 658.3 513 66.1
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 8.3e-187 657.5 572 61.0
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 8.3e-187 657.5 508 66.5
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.8e-186 656.4 514 65.6
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.8e-186 656.4 497 66.2
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.8e-186 656.4 512 64.6
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 4.1e-186 655.2 432 72.7
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 5.4e-186 654.8 462 69.5
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 7.0e-186 654.4 493 67.1
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 2.7e-185 652.5 481 68.0
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 7.7e-185 651.0 510 63.5
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.7e-184 649.8 497 66.2
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 9.4e-183 644.0 434 71.7
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.2e-182 643.7 490 65.3
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 2.1e-182 642.9 501 64.9
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 8.0e-174 614.4 479 63.0
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 9.8e-172 607.4 540 59.6
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 5.4e-170 601.7 484 62.4
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.2e-169 600.5 512 59.0
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 4.3e-167 592.0 355 81.4
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 6.2e-166 588.2 440 66.6
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 4.6e-161 572.0 461 62.0
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 6.2e-158 561.6 379 73.6
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.9e-154 550.1 371 73.3
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.9e-151 540.0 473 57.1
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 5.6e-151 538.5 415 66.3
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 2.4e-146 523.1 508 54.7
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 6.4e-139 498.4 448 58.5
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.0e-128 464.5 384 62.2
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.8e-126 456.4 354 63.3
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 7.9e-121 438.3 516 45.7
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 8.1e-118 428.3 391 59.8
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 9.0e-117 424.9 452 50.2
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 7.9e-113 411.8 498 46.8
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.3e-112 411.0 440 50.0
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.9e-106 390.6 286 67.5
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 5.7e-103 379.0 327 61.5
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 1.6e-84 317.8 678 34.7
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 3.1e-77 293.5 458 38.9
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 4.4e-71 273.1 447 40.5
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 2.0e-68 264.2 461 35.6
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 3.5e-68 263.5 240 57.5
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 1.9e-58 231.1 212 56.6
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 4.0e-56 223.4 476 32.4
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 5.2e-56 223.0 372 35.8
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 9.8e-55 218.8 157 71.3
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 7.1e-37 159.5 243 39.1
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 2.1e-36 157.9 209 41.1
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 3.3e-34 150.6 137 60.6
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.8e-33 147.5 102 71.6
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-32 144.8 92 77.2
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.6e-25 120.6 343 25.9
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.6e-20 105.1 111 55.0
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-16 92.0 65 69.2
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 4.6e-12 77.0 49 79.6
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 6.0e-12 76.6 44 75.0
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 1.6e-09 68.6 66 60.6
Solyc04g025650.3 Solanum lycopersicum HOM05D000686 ORTHO05D000512 4.0e-08 63.9 406 24.1
Sopen04g013330 Solanum pennellii HOM05D000686 ORTHO05D000512 1.5e-07 62.0 407 24.1
Nitab4.5_0000031g0070 Nicotiana tabacum HOM05D000686 ORTHO05D000512 3.4e-07 60.8 400 24.0
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 5.8e-07 60.1 428 21.7
Actinidia01534 Actinidia chinensis HOM05D000686 ORTHO05D000512 1.7e-06 58.5 433 23.1


User provided reference genes

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