Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 1.2e-83 313.2 163 100.0
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 3.7e-64 248.4 164 80.5
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 2.4e-63 245.7 163 76.7
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 1.3e-61 240.0 164 79.3
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 6.3e-56 221.1 205 61.0
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.4e-55 219.2 159 76.1
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 3.1e-55 218.8 161 73.3
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 9.4e-52 207.2 141 75.9
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.1e-51 206.1 141 75.9
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 8.0e-51 204.1 139 77.0
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 5.2e-50 201.4 150 72.0
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 1.1e-49 200.3 154 70.1
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 4.4e-49 198.4 141 73.0
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 1.7e-48 196.4 163 66.3
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 9.1e-47 190.7 158 66.5
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 2.6e-46 189.1 154 66.9
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 5.9e-46 188.0 149 67.8
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 7.7e-46 187.6 154 66.2
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 7.7e-46 187.6 163 62.0
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.9e-45 185.7 152 67.1
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 2.9e-45 185.7 119 82.4
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 5.0e-45 184.9 156 68.6
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.5e-44 183.3 154 65.6
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 9.4e-44 180.6 151 65.6
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 2.1e-43 179.5 150 63.3
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.1e-43 179.5 183 56.8
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 2.7e-43 179.1 163 63.8
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 8.0e-43 177.6 159 64.2
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.4e-42 176.8 155 65.2
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 3.0e-42 175.6 148 66.2
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 4.0e-42 175.3 149 69.1
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 8.8e-42 174.1 141 68.1
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 5.7e-41 171.4 135 65.9
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 5.7e-41 171.4 135 65.9
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 7.5e-41 171.0 148 62.2
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 3.7e-40 168.7 123 72.4
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 4.8e-40 168.3 162 59.3
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.4e-39 166.8 121 68.6
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 1.8e-39 166.4 157 62.4
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 1.8e-39 166.4 138 65.9
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 3.1e-39 165.6 153 64.1
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 3.1e-39 165.6 139 64.7
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 5.3e-39 164.9 121 66.1
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 7.0e-39 164.5 126 69.0
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 7.0e-39 164.5 126 69.0
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 7.0e-39 164.5 126 69.0
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 5.9e-38 161.4 155 58.7
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 5.9e-38 161.4 124 67.7
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 7.7e-38 161.0 164 56.7
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 8.5e-37 157.5 142 59.2
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.1e-36 157.1 164 56.1
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 1.5e-36 156.8 155 57.4
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.5e-36 156.8 173 54.9
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.5e-36 156.0 168 56.0
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 3.2e-36 155.6 127 65.4
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 9.4e-36 154.1 128 63.3
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 1.2e-35 153.7 139 60.4
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 1.6e-35 153.3 107 72.9
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 1.6e-35 153.3 137 60.6
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 1.6e-35 153.3 120 67.5
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 1.6e-35 153.3 120 67.5
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 1.6e-35 153.3 147 59.2
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 1.6e-35 153.3 155 55.5
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 2.7e-35 152.5 134 61.9
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 2.7e-35 152.5 134 61.9
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 3.6e-35 152.1 139 59.7
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 3.6e-35 152.1 110 70.0
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 3.6e-35 152.1 143 60.8
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 6.1e-35 151.4 141 59.6
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 8.0e-35 151.0 110 68.2
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 1.0e-34 150.6 130 63.8
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 1.4e-34 150.2 113 68.1
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 1.4e-34 150.2 113 68.1
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 1.4e-34 150.2 113 68.1
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 1.4e-34 150.2 139 59.7
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 2.3e-34 149.4 119 64.7
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 3.0e-34 149.1 112 68.8
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 5.2e-34 148.3 125 62.4
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 5.2e-34 148.3 109 67.9
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 6.8e-34 147.9 112 67.9
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 6.8e-34 147.9 112 67.9
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 6.8e-34 147.9 107 69.2
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 1.5e-33 146.7 131 61.8
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 1.5e-33 146.7 116 63.8
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 7.5e-33 144.4 155 54.2
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 1.3e-32 143.7 103 68.9
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 8.3e-32 141.0 165 52.7
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 1.1e-31 140.6 125 60.8
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 4.1e-31 138.7 117 64.1
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 1.6e-30 136.7 109 60.6
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 1.6e-30 136.7 126 61.1
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 4.5e-30 135.2 137 54.7
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 1.7e-29 133.3 91 74.7
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 2.3e-29 132.9 100 65.0
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 5.0e-29 131.7 139 54.7
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 5.0e-29 131.7 139 54.7
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 8.6e-29 131.0 116 62.1
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.9e-28 129.8 101 61.4
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 1.9e-28 129.8 115 58.3
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 9.5e-28 127.5 122 56.6
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 2.1e-27 126.3 138 53.6
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 3.6e-27 125.6 105 60.0
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 4.4e-25 118.6 153 47.1
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 3.7e-24 115.5 93 62.4
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 7.0e-23 111.3 140 45.0
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 2.0e-22 109.8 145 49.0
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 4.5e-22 108.6 92 64.1
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 2.3e-21 106.3 82 61.0
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 2.9e-21 105.9 87 58.6
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 1.1e-20 104.0 97 58.8
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 3.3e-20 102.4 126 49.2
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 7.3e-20 101.3 86 58.1
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 2.1e-19 99.8 153 41.8
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 1.0e-18 97.4 68 69.1
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 1.4e-18 97.1 64 81.2
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 2.3e-18 96.3 99 47.5
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 4.0e-18 95.5 143 43.4
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 4.4e-17 92.0 108 52.8
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 4.4e-17 92.0 68 67.6
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 8.3e-16 87.8 96 54.2
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 8.3e-16 87.8 96 54.2
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 1.9e-15 86.7 76 59.2
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 3.2e-15 85.9 84 50.0
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 3.2e-15 85.9 96 53.1
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 1.2e-14 84.0 96 52.1
COL.COLO4_34468 Corchorus olitorius HOM05D005411 ORTHO05D006463 4.7e-11 72.0 69 56.5
Sabra17G0034500 Salix brachista HOM05D005411 ORTHO05D006463 4.7e-11 72.0 90 51.1
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 6.2e-11 71.6 56 64.3
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.4e-10 70.5 67 50.7
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.4e-10 70.5 67 50.7
Sabra11G0012500 Salix brachista HOM05D005411 ORTHO05D006463 6.8e-10 68.2 87 49.4
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 1.5e-09 67.0 68 55.9
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 2.0e-09 66.6 68 55.9
Eucgr.H02258 Eucalyptus grandis HOM05D005411 ORTHO05D006463 2.0e-09 66.6 79 50.6
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 5.8e-09 65.1 83 49.4
Sabra05G0164800 Salix brachista HOM05D005411 ORTHO05D006463 9.8e-09 64.3 87 47.1
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 9.8e-09 64.3 46 67.4
CSS0004409 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 3.5e-06 55.8 73 47.9
CSS0027281 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 3.5e-06 55.8 73 47.9


User provided reference genes

Program Settings