Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G093100 Prunus persica HOM05D008129 ORTHO05D010232 7.1e-124 447.2 213 100.0
MD00G1110200 Malus domestica HOM05D008129 ORTHO05D010232 5.5e-84 314.7 212 73.1
RcHm_v2.0_Chr7g0198961 Rosa chinensis HOM05D008129 ORTHO05D010232 2.4e-71 272.7 209 67.5
MD04G1064800 Malus domestica HOM05D008129 ORTHO05D010232 2.1e-67 259.6 185 68.6
FvH4_5g01760 Fragaria vesca HOM05D008129 ORTHO05D010232 6.3e-64 248.1 200 65.5
FAN18G4443 Fragaria x ananassa HOM05D008129 ORTHO05D010232 6.3e-64 248.1 200 65.5
FAN08G0538 Fragaria x ananassa HOM05D008129 ORTHO05D010232 4.5e-62 241.9 200 64.0
FAN04G1130 Fragaria x ananassa HOM05D008129 ORTHO05D010232 9.4e-60 234.2 193 65.8
FAN13G1875 Fragaria x ananassa HOM05D008129 ORTHO05D010232 2.1e-59 233.0 193 65.8
Haze_08930 Corylus avellana HOM05D008129 ORTHO05D010232 1.1e-52 210.7 191 59.7
Cfa012120 Carpinus fangiana HOM05D008129 ORTHO05D010232 9.4e-52 207.6 188 58.5
Manes.01G065300 Manihot esculenta HOM05D008129 ORTHO05D010232 8.8e-50 201.1 173 57.8
Ciclev10022388m.g Citrus clementina HOM05D008129 ORTHO05D010232 1.5e-49 200.3 145 66.9
CiPaw.11G139400 Carya illinoinensis HOM05D008129 ORTHO05D010232 7.5e-49 198.0 178 58.4
Sabra01G0081800 Salix brachista HOM05D008129 ORTHO05D010232 9.7e-49 197.6 175 57.7
Thecc.03G273100 Theobroma cacao HOM05D008129 ORTHO05D010232 2.2e-48 196.4 181 56.4
CiPaw.12G097000 Carya illinoinensis HOM05D008129 ORTHO05D010232 4.8e-48 195.3 180 57.2
TAR629G0329 Trochodendron aralioides HOM05D008129 ORTHO05D010232 2.0e-46 189.9 206 50.5
QL12p017610 Quercus lobata HOM05D008129 ORTHO05D010232 7.7e-46 188.0 195 53.8
CSS0045994 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 1.0e-45 187.6 210 49.5
Potri.001G108300 Populus trichocarpa HOM05D008129 ORTHO05D010232 2.2e-45 186.4 173 55.5
QL12p017600 Quercus lobata HOM05D008129 ORTHO05D010232 2.9e-45 186.0 194 53.6
Dinv38993 Davidia involucrata HOM05D008129 ORTHO05D010232 3.8e-45 185.7 184 55.4
Gohir.D03G153100 Gossypium hirsutum HOM05D008129 ORTHO05D010232 1.9e-44 183.3 141 62.4
COL.COLO4_05253 Corchorus olitorius HOM05D008129 ORTHO05D010232 5.5e-44 181.8 144 61.8
Gohir.A03G018500 Gossypium hirsutum HOM05D008129 ORTHO05D010232 5.5e-44 181.8 141 62.4
Gorai.003G160700 Gossypium raimondii HOM05D008129 ORTHO05D010232 9.4e-44 181.0 172 55.2
Hma1.2p1_0514F.1_g169980 Hydrangea macrophylla HOM05D008129 ORTHO05D010232 1.2e-41 174.1 183 51.9
CSS0008314 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 9.8e-41 171.0 218 45.9
Lj2P194T38 Lonicera japonica HOM05D008129 ORTHO05D010232 1.4e-39 167.2 196 49.5
Rhsim07G0093300 Rhododendron simsii HOM05D008129 ORTHO05D010232 9.1e-39 164.5 183 53.6
SGA_v2.0_scaffold144G35967 Striga asiatica HOM05D008129 ORTHO05D010232 7.2e-36 154.8 138 60.1
ECA246G2221 Erigeron canadensis HOM05D008129 ORTHO05D010232 6.1e-35 151.8 147 54.4
Oeu029783.1 Olea europaea HOM05D008129 ORTHO05D010232 2.3e-34 149.8 138 57.2
AUR62010633 Chenopodium quinoa HOM05D008129 ORTHO05D010232 6.8e-34 148.3 209 43.5
EL10Ac5g12748 Beta vulgaris HOM05D008129 ORTHO05D010232 2.6e-33 146.4 215 42.8
Nn6g34205 Nelumbo nucifera HOM05D008129 ORTHO05D010232 5.4e-31 138.7 200 44.0
PGSC0003DMG400003052 Solanum tuberosum HOM05D008129 ORTHO05D010232 1.6e-30 137.1 178 43.8
Migut.E01284 Erythranthe guttata HOM05D008129 ORTHO05D010232 5.9e-30 135.2 173 44.5
Nitab4.5_0003924g0090 Nicotiana tabacum HOM05D008129 ORTHO05D010232 1.0e-29 134.4 180 45.0
Cc08_g14170 Coffea canephora HOM05D008129 ORTHO05D010232 3.8e-29 132.5 170 48.2
Solyc08g080530.1 Solanum lycopersicum HOM05D008129 ORTHO05D010232 3.8e-29 132.5 178 42.1
Lalb_Chr09g0333221 Lupinus albus HOM05D008129 ORTHO05D010232 1.9e-28 130.2 170 45.9
TAR375G1113 Trochodendron aralioides HOM05D008129 ORTHO05D010232 3.6e-27 125.9 121 53.7
SGA_v2.0_scaffold385G50459 Striga asiatica HOM05D008129 ORTHO05D010232 8.0e-27 124.8 116 54.3
Eucgr.E00553 Eucalyptus grandis HOM05D008129 ORTHO05D010232 1.4e-26 124.0 134 49.3
Glyma.11G025800 Glycine max HOM05D008129 ORTHO05D010232 4.9e-24 115.5 170 47.6
Thecc.03G273000 Theobroma cacao HOM05D008129 ORTHO05D010232 6.4e-24 115.2 137 46.0
CsaV3_5G003170 Cucumis sativus L. HOM05D008129 ORTHO05D010232 9.2e-23 111.3 176 42.6
Medtr8g096860 Medicago truncatula HOM05D008129 ORTHO05D010232 1.6e-22 110.5 169 43.8
VMungo1215G1765 Vigna mungo HOM05D008129 ORTHO05D010232 1.6e-22 110.5 169 42.0
MELO3C005638.2 Cucumis melo HOM05D008129 ORTHO05D010232 3.5e-22 109.4 175 44.6
Gorai.003G160800 Gossypium raimondii HOM05D008129 ORTHO05D010232 1.0e-21 107.8 171 42.7
Gohir.D03G153200 Gossypium hirsutum HOM05D008129 ORTHO05D010232 1.7e-21 107.1 182 40.1
Eucgr.D01909 Eucalyptus grandis HOM05D008129 ORTHO05D010232 5.0e-21 105.5 162 40.1
Psat7g036080 Pisum sativum HOM05D008129 ORTHO05D010232 6.6e-21 105.1 170 40.6
Gohir.A03G018400 Gossypium hirsutum HOM05D008129 ORTHO05D010232 1.5e-20 104.0 172 41.9
Phvul.002G155100 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 1.5e-20 104.0 170 40.6
TPR.G12796 Trifolium pratense HOM05D000268 ORTHO05D000261 1.9e-20 103.6 169 40.2
COL.COLO4_05254 Corchorus olitorius HOM05D008129 ORTHO05D010232 7.3e-20 101.7 139 40.3
Lj2g0000650 Lotus japonicus HOM05D008129 ORTHO05D010232 1.2e-17 94.4 174 41.4
Phvul.002G286400 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 4.9e-16 89.0 173 38.7
vmacro00355 Vaccinium macrocarpon HOM05D001075 ORTHO05D001779 6.0e-14 82.0 80 55.0
Dinv37674 Davidia involucrata HOM05D008129 ORTHO05D010232 1.1e-12 77.8 61 63.9
SEGI_31534 Sequoiadendron giganteum HOM05D001109 ORTHO05D002124 7.3e-12 75.1 135 36.3
ClCG01G003050 Citrullus lanatus HOM05D008129 ORTHO05D010232 1.2e-11 74.3 144 40.3
Lsat_1_v5_gn_3_8420 Lactuca sativa HOM05D008129 ORTHO05D010232 1.2e-11 74.3 66 62.1
Peaxi162Scf00233g00082 Petunia axillaris HOM05D002113 ORTHO05D002124 6.8e-10 68.6 172 31.4
Oeu062744.1 Olea europaea HOM05D008129 ORTHO05D010232 2.0e-09 67.0 56 58.9
Aqoxy7G00401 Aquilegia oxysepala HOM05D002113 ORTHO05D002124 4.4e-09 65.9 138 35.5
Migut.B01706 Erythranthe guttata HOM05D002113 ORTHO05D002124 2.2e-08 63.5 179 34.1
CDE08G0587 Ceratophyllum demersum HOM05D001109 ORTHO05D001051 2.9e-08 63.2 195 31.3
Prupe.2G157300 Prunus persica HOM05D002113 ORTHO05D002124 2.9e-08 63.2 178 32.0
Nitab4.5_0006421g0020 Nicotiana tabacum HOM05D002113 ORTHO05D002124 8.3e-08 61.6 178 31.5
MD01G1049300 Malus domestica HOM05D002113 ORTHO05D002124 1.1e-07 61.2 139 33.8
MD07G1126500 Malus domestica HOM05D002113 ORTHO05D002124 1.1e-07 61.2 175 32.0
Eucgr.E00206 Eucalyptus grandis HOM05D002113 ORTHO05D002124 1.4e-07 60.8 187 29.9
PGSC0003DMG400013409 Solanum tuberosum HOM05D001109 ORTHO05D001051 1.4e-07 60.8 142 31.0
Nitab4.5_0000592g0410 Nicotiana tabacum HOM05D001109 ORTHO05D001051 3.2e-07 59.7 143 30.1
Nitab4.5_0002210g0030 Nicotiana tabacum HOM05D001109 ORTHO05D001051 3.2e-07 59.7 141 30.5
SalBow3G1880 Salvia bowleyana HOM05D002113 ORTHO05D002124 3.2e-07 59.7 173 31.8
MD01G1049600 Malus domestica HOM05D002113 ORTHO05D002124 4.1e-07 59.3 177 32.8
Peaxi162Scf00169g00223 Petunia axillaris HOM05D001109 ORTHO05D001051 4.1e-07 59.3 141 30.5
Sopen03g001730 Solanum pennellii HOM05D001109 ORTHO05D001051 4.1e-07 59.3 142 29.6
CAN.G566.14 Capsicum annuum HOM05D001109 ORTHO05D001051 5.4e-07 58.9 142 29.6
Prupe.2G157400 Prunus persica HOM05D002113 ORTHO05D002124 5.4e-07 58.9 178 31.5
CAN.G638.36 Capsicum annuum HOM05D001109 ORTHO05D001051 7.1e-07 58.5 142 31.0
Lj2C45T9 Lonicera japonica HOM05D001109 ORTHO05D001051 7.1e-07 58.5 139 30.9
Lalb_Chr17g0339921 Lupinus albus HOM05D002113 ORTHO05D002124 7.1e-07 58.5 171 28.1
Nitab4.5_0008375g0040 Nicotiana tabacum HOM05D001109 ORTHO05D001051 7.1e-07 58.5 141 29.8
Solyc03g005720.3 Solanum lycopersicum HOM05D001109 ORTHO05D001051 7.1e-07 58.5 142 29.6
THA.LOC104817276 Tarenaya hassleriana HOM05D002113 ORTHO05D002124 7.1e-07 58.5 137 30.7
Migut.G00573 Erythranthe guttata HOM05D001109 ORTHO05D001051 9.2e-07 58.2 144 30.6
Peaxi162Scf00319g00522 Petunia axillaris HOM05D001109 ORTHO05D001051 9.2e-07 58.2 142 30.3
Zm00001eb191520 Zea mays HOM05D001109 ORTHO05D001051 9.2e-07 58.2 134 31.3
Oeu058608.1 Olea europaea HOM05D002113 ORTHO05D002124 1.2e-06 57.8 174 31.0
PGSC0003DMG400029340 Solanum tuberosum HOM05D001109 ORTHO05D001051 1.6e-06 57.4 142 29.6
vmacro13326 Vaccinium macrocarpon HOM05D002113 ORTHO05D002124 1.6e-06 57.4 181 28.7
Nitab4.5_0000061g0060 Nicotiana tabacum HOM05D001109 ORTHO05D001051 2.1e-06 57.0 134 32.8
Nitab4.5_0005213g0010 Nicotiana tabacum HOM05D008129 ORTHO05D010232 2.1e-06 57.0 78 43.6
ECA240G0265 Erigeron canadensis HOM05D002113 ORTHO05D002124 2.7e-06 56.6 184 28.3
Sp5g02180 Schrenkiella parvula HOM05D002113 ORTHO05D002124 2.7e-06 56.6 170 27.6
Solyc12g096970.2 Solanum lycopersicum HOM05D001109 ORTHO05D001051 2.7e-06 56.6 142 28.2
Sopen12g032780 Solanum pennellii HOM05D001109 ORTHO05D001051 2.7e-06 56.6 142 28.2
MSTRG.4176 Avicennia marina HOM05D001109 ORTHO05D001051 3.5e-06 56.2 143 32.2
CAN.G524.12 Capsicum annuum HOM05D001109 ORTHO05D028480 3.5e-06 56.2 145 29.7
AUR62017276 Chenopodium quinoa HOM05D008129 ORTHO05D010232 3.5e-06 56.2 105 39.0
CSS0007005 Camellia sinensis var. sinensis HOM05D001109 ORTHO05D001051 4.6e-06 55.8 140 32.1
HPP92_026256 Vanilla planifolia HOM05D000865 ORTHO05D000739 4.6e-06 55.8 142 27.5


User provided reference genes

Program Settings