Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 1.2e-169 599.7 307 100.0
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 3.8e-139 498.4 307 85.0
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 3.0e-131 472.2 311 80.1
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 4.0e-128 461.8 290 82.1
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.6e-127 459.1 334 74.6
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.2e-126 456.1 331 74.0
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.9e-125 453.0 296 79.7
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 2.4e-125 452.6 296 80.1
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 1.0e-123 447.2 276 81.2
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 2.9e-118 429.1 271 77.9
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 6.4e-118 427.9 307 73.3
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 1.1e-117 427.2 290 74.8
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 1.4e-117 426.8 301 71.1
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 1.4e-117 426.8 311 70.7
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 3.2e-117 425.6 285 74.4
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 4.1e-117 425.2 285 73.3
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 9.2e-117 424.1 290 73.8
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 2.1e-116 422.9 312 71.5
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 2.7e-116 422.5 272 76.8
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 4.6e-116 421.8 308 72.1
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 4.6e-116 421.8 308 72.1
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 7.8e-116 421.0 300 72.7
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 1.7e-115 419.9 301 72.8
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 5.1e-115 418.3 266 79.7
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 1.9e-114 416.4 314 69.4
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 1.9e-114 416.4 265 77.0
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 1.9e-114 416.4 277 74.4
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 2.5e-114 416.0 283 74.2
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 5.6e-114 414.8 309 70.2
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 5.6e-114 414.8 277 74.0
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 7.3e-114 414.5 270 75.9
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 7.3e-114 414.5 309 69.9
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 7.3e-114 414.5 269 77.7
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 7.3e-114 414.5 266 76.3
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 9.5e-114 414.1 298 71.5
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.2e-113 413.7 309 68.9
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 1.6e-113 413.3 273 74.7
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 2.1e-113 412.9 303 70.6
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 2.1e-113 412.9 309 69.3
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 3.6e-113 412.1 309 68.9
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 4.7e-113 411.8 279 74.9
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 1.4e-112 410.2 306 68.6
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 1.4e-112 410.2 267 75.7
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 1.8e-112 409.8 284 72.2
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 1.8e-112 409.8 284 73.6
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 2.3e-112 409.5 267 74.9
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 3.1e-112 409.1 294 72.4
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 3.1e-112 409.1 305 68.5
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 4.0e-112 408.7 274 74.8
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 6.8e-112 407.9 268 74.3
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 8.9e-112 407.5 284 73.2
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 1.2e-111 407.1 287 71.4
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 2.0e-111 406.4 315 68.3
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 1.3e-110 403.7 312 67.3
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 1.7e-110 403.3 259 76.4
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.1e-109 400.6 301 69.4
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 1.4e-109 400.2 264 74.2
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 1.9e-109 399.8 286 70.3
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 1.9e-109 399.8 275 71.6
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 5.4e-109 398.3 274 71.5
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 5.4e-109 398.3 311 66.2
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 1.6e-108 396.7 292 69.2
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.6e-108 396.7 264 74.2
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 1.6e-108 396.7 266 73.7
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 1.6e-108 396.7 318 67.0
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 2.1e-108 396.4 272 73.2
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.5e-108 395.6 291 70.1
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.5e-108 395.6 291 70.1
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 1.7e-107 393.3 296 70.3
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 5.1e-107 391.7 302 67.9
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 8.6e-107 391.0 354 59.6
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 1.9e-106 389.8 318 62.9
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 3.3e-106 389.0 274 71.2
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 3.3e-106 389.0 274 71.2
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 4.3e-106 388.7 275 70.9
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 2.8e-105 386.0 327 63.9
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 6.2e-105 384.8 291 66.3
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 6.2e-105 384.8 305 65.9
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 1.8e-104 383.3 293 66.2
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 3.1e-104 382.5 267 71.9
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 5.2e-104 381.7 307 65.5
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.0e-103 379.8 267 70.0
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 5.8e-103 378.3 231 79.7
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 5.8e-103 378.3 357 59.9
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 9.9e-103 377.5 246 72.4
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 1.7e-102 376.7 415 54.0
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 6.4e-102 374.8 230 79.6
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.1e-101 374.0 268 74.6
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 2.1e-100 369.8 292 63.7
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 7.8e-100 367.9 231 78.8
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 1.3e-99 367.1 233 77.3
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 2.3e-99 366.3 304 64.1
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 3.9e-99 365.5 262 67.2
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.3e-98 362.5 231 77.1
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 4.8e-97 358.6 277 65.3
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 4.6e-92 342.0 251 65.7
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 6.0e-92 341.7 262 66.4
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 1.6e-89 333.6 277 63.2
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-85 320.9 237 69.2
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 2.7e-84 316.2 251 61.4
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 6.0e-84 315.1 250 60.4
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 3.9e-83 312.4 194 77.3
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 9.0e-80 301.2 222 75.2
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 9.3e-77 291.2 222 66.2
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.3e-75 287.3 238 66.4
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 3.3e-74 282.7 201 67.2
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 9.6e-74 281.2 175 82.3
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 6.9e-72 275.0 231 63.2
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 1.1e-66 257.7 172 72.1
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 1.9e-66 256.9 203 68.5
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 1.4e-64 250.8 191 68.1
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 9.4e-61 238.0 159 72.3
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 5.1e-59 232.3 220 53.2
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 1.3e-54 217.6 171 67.3
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.4e-53 214.2 171 66.1
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 7.9e-52 208.4 130 77.7
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 2.0e-47 193.7 228 50.0
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 5.5e-45 185.7 122 70.5
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 6.1e-44 182.2 157 63.7
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 8.0e-44 181.8 177 62.7
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-43 181.4 157 62.4
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 5.2e-43 179.1 156 62.2
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 8.8e-43 178.3 157 61.8
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 3.3e-42 176.4 173 56.6
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 3.3e-42 176.4 157 62.4
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 9.7e-42 174.9 162 59.3
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 6.3e-41 172.2 168 57.1
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-40 170.2 158 58.9
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 9.1e-40 168.3 108 76.9
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-36 156.8 144 59.7
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 4.0e-35 152.9 162 54.9
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 5.2e-35 152.5 104 70.2
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 2.2e-33 147.1 105 67.6
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 2.8e-33 146.7 339 33.0
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 7.0e-32 142.1 160 52.5
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 7.0e-32 142.1 160 52.5
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-31 140.6 94 75.5
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-31 140.2 109 67.0
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-30 137.9 123 59.3
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-30 137.5 122 59.0
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.9e-30 136.7 88 70.5
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.5e-26 124.4 74 82.4
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.1e-24 116.7 139 51.8
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-23 114.0 109 56.9
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 3.6e-20 103.2 70 74.3
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.0e-19 100.1 133 44.4
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 7.0e-16 89.0 57 75.4
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.6e-15 87.8 56 73.2
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-14 84.7 96 51.0
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 3.0e-14 83.6 89 52.8
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 7.5e-10 68.9 121 35.5
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 6.0e-07 59.3 111 34.2
Duzib205G0541 Durio zibethinus HOM05D004703 ORTHO05D005801 5.0e-06 56.2 148 32.4


User provided reference genes

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