Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 4.3e-234 814.3 413 100.0
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 3.2e-197 691.8 413 85.7
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 9.3e-181 637.1 413 81.4
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 6.0e-180 634.4 413 78.7
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.2e-175 620.2 413 79.7
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.2e-174 615.9 413 79.4
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 5.0e-174 614.8 413 79.2
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 4.6e-172 608.2 413 78.0
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 7.9e-172 607.4 413 75.5
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 7.9e-172 607.4 420 72.6
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 4.3e-170 601.7 414 72.9
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 1.6e-169 599.7 374 80.2
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 2.8e-169 599.0 400 74.5
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 8.2e-169 597.4 403 75.4
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 3.1e-168 595.5 400 74.8
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 4.1e-168 595.1 404 75.7
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 5.3e-168 594.7 413 72.9
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 4.5e-167 591.7 416 72.1
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 3.8e-166 588.6 415 73.3
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 6.5e-166 587.8 416 72.4
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 8.5e-166 587.4 402 73.4
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 1.1e-165 587.0 418 72.2
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 9.4e-165 583.9 414 73.7
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 1.2e-164 583.6 414 72.2
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 2.1e-164 582.8 358 81.6
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 1.0e-163 580.5 390 74.9
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 5.1e-163 578.2 421 71.7
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 2.5e-162 575.9 414 72.5
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 5.7e-162 574.7 414 72.0
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 7.4e-162 574.3 403 71.0
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 1.1e-160 570.5 402 72.6
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 2.6e-159 565.8 425 68.7
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 3.4e-159 565.5 414 70.3
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 3.4e-159 565.5 413 71.9
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 3.4e-159 565.5 402 72.9
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 2.2e-158 562.8 406 70.9
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.8e-158 562.0 404 72.3
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.8e-158 562.0 404 71.8
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 5.0e-158 561.6 428 66.8
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.1e-157 560.5 422 69.0
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 9.4e-157 557.4 355 76.6
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 2.7e-156 555.8 357 76.8
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 3.6e-156 555.4 348 78.7
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 2.3e-155 552.7 404 68.8
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.0e-155 552.4 422 67.8
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 3.0e-155 552.4 404 69.1
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 6.7e-155 551.2 375 75.7
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 8.8e-155 550.8 404 70.0
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 1.1e-154 550.4 367 76.3
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 2.6e-154 549.3 404 73.0
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 2.6e-154 549.3 348 79.3
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 4.4e-154 548.5 406 69.7
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 2.8e-153 545.8 420 67.1
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 1.4e-152 543.5 402 67.9
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.8e-152 543.1 384 72.4
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 2.4e-152 542.7 353 77.6
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 3.1e-152 542.3 289 87.9
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 7.0e-152 541.2 373 72.4
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 7.0e-152 541.2 350 77.7
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 7.0e-152 541.2 320 82.2
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 1.2e-151 540.4 285 89.8
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 7.7e-151 537.7 343 78.1
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.3e-150 537.0 403 68.0
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 1.7e-150 536.6 402 67.7
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 5.0e-150 535.0 353 76.5
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.1e-149 533.9 414 69.6
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 1.1e-149 533.9 368 74.2
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 1.1e-149 533.9 437 64.1
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 1.9e-149 533.1 355 74.9
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 2.1e-148 529.6 289 85.8
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 2.7e-148 529.3 289 85.5
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 6.1e-148 528.1 318 82.7
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 8.0e-148 527.7 344 75.9
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 8.0e-148 527.7 420 68.3
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 3.0e-147 525.8 289 85.8
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 6.7e-147 524.6 326 82.2
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 8.8e-147 524.2 289 85.5
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 1.1e-146 523.9 405 69.6
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 2.0e-146 523.1 289 85.1
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 2.0e-146 523.1 417 66.9
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 3.3e-146 522.3 288 85.4
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 7.5e-146 521.2 367 73.6
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 1.7e-145 520.0 289 84.1
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 1.7e-145 520.0 407 66.8
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 2.2e-145 519.6 289 84.4
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 3.7e-145 518.8 435 63.4
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 4.8e-145 518.5 289 84.4
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 6.3e-145 518.1 323 76.5
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 1.8e-144 516.5 496 59.1
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 2.4e-144 516.2 289 84.4
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 5.3e-144 515.0 289 84.1
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 1.2e-143 513.8 290 84.1
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 1.2e-143 513.8 290 84.1
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.5e-143 512.3 321 78.8
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 4.5e-143 511.9 413 61.5
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 6.5e-142 508.1 310 79.0
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 8.5e-142 507.7 351 74.4
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 1.5e-141 506.9 374 70.3
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 2.1e-140 503.1 380 67.9
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 1.4e-139 500.4 357 70.9
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 4.0e-139 498.8 403 67.0
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 3.7e-137 492.3 266 86.5
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 1.4e-136 490.3 347 67.7
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.2e-135 487.3 362 68.2
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 3.5e-135 485.7 265 86.8
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 1.3e-134 483.8 292 76.7
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 5.5e-133 478.4 349 75.6
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 8.0e-132 474.6 281 80.4
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 8.8e-131 471.1 324 71.9
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 1.2e-130 470.7 365 64.7
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 3.7e-129 465.7 386 61.4
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 8.3e-129 464.5 348 69.8
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 5.9e-127 458.4 265 81.5
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.9e-117 426.8 363 59.2
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 1.4e-115 420.6 414 57.7
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 5.2e-115 418.7 280 69.3
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 1.2e-114 417.5 441 55.3
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 1.3e-113 414.1 219 89.5
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 9.2e-112 407.9 272 69.5
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 3.3e-109 399.4 274 66.4
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 5.8e-106 388.7 345 58.6
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 2.6e-98 363.2 183 91.3
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 4.4e-98 362.5 408 54.4
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.4e-96 357.5 408 54.2
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 1.7e-78 297.4 147 92.5
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 2.1e-76 290.4 155 83.9
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 5.1e-70 269.2 263 63.1
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 2.1e-47 194.1 173 60.1
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 5.7e-45 186.0 173 60.1
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 3.1e-43 180.3 238 45.0
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 4.1e-43 179.9 120 74.2
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 3.3e-37 160.2 165 53.3
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 3.7e-36 156.8 94 71.3
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.0e-33 148.7 131 63.4
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 7.5e-29 132.5 84 77.4
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 1.3e-28 131.7 66 89.4
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 3.7e-28 130.2 72 91.7
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 4.8e-28 129.8 162 48.8
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.0e-26 124.4 66 81.8
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 6.8e-22 109.4 71 74.6
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 8.8e-22 109.0 66 77.3
MD06G1074700 Malus domestica HOM05D005292 ORTHO05D248125 4.4e-21 106.7 98 58.2
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 8.5e-17 92.4 66 69.7
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 1.8e-14 84.7 66 60.6
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 1.0e-06 58.9 36 72.2


User provided reference genes

Program Settings