Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 6.9e-218 760.4 390 100.0
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 5.7e-204 714.1 391 93.4
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 7.2e-199 697.2 390 91.3
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 5.3e-194 681.0 393 89.6
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.3e-194 681.0 393 89.6
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.4e-193 678.3 393 89.3
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.5e-192 673.7 398 88.4
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.9e-191 672.5 393 88.5
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 2.2e-184 649.0 399 84.0
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 6.5e-184 647.5 392 85.2
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.6e-182 642.9 396 83.6
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 1.6e-182 642.9 396 84.8
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 2.1e-182 642.5 397 84.1
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 4.7e-182 641.3 401 83.0
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.8e-181 639.4 400 83.0
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 2.3e-181 639.0 399 83.5
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.0e-181 638.6 396 82.6
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.9e-181 638.3 396 83.1
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 2.6e-180 635.6 397 83.1
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 3.3e-180 635.2 396 82.1
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.2e-179 632.5 396 81.8
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 6.3e-179 630.9 400 82.5
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 1.8e-178 629.4 399 83.2
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 1.6e-177 626.3 398 80.4
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 5.9e-177 624.4 397 81.1
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 5.9e-177 624.4 402 79.9
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 7.7e-177 624.0 395 80.0
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 1.3e-176 623.2 402 81.3
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 1.3e-176 623.2 397 82.1
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 5.0e-176 621.3 408 80.1
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.1e-175 620.2 397 82.1
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.9e-175 619.4 398 80.7
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.9e-175 619.4 398 80.7
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 2.5e-175 619.0 397 80.4
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 4.2e-175 618.2 397 82.1
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 2.1e-174 615.9 406 79.1
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 2.1e-174 615.9 399 79.2
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 6.8e-173 610.9 406 78.3
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 8.8e-173 610.5 402 79.9
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 1.7e-171 606.3 386 81.3
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 2.2e-171 605.9 397 78.8
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 2.8e-171 605.5 390 78.5
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 2.4e-170 602.4 399 78.2
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 4.1e-170 601.7 399 78.2
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 9.1e-170 600.5 390 79.7
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 2.7e-169 599.0 391 79.0
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 2.7e-169 599.0 358 84.6
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 5.9e-169 597.8 395 78.5
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 7.7e-169 597.4 399 77.7
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 8.5e-168 594.0 394 76.6
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 1.1e-167 593.6 399 78.4
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 1.9e-167 592.8 396 76.5
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 3.2e-167 592.0 397 76.3
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 5.5e-167 591.3 391 77.7
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 9.4e-167 590.5 398 76.1
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 1.6e-166 589.7 398 76.1
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 1.6e-166 589.7 398 76.1
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 2.1e-166 589.3 395 76.2
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 3.6e-166 588.6 397 75.6
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.2e-164 583.6 396 76.8
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 4.4e-164 581.6 393 77.6
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 5.7e-164 581.3 504 64.5
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 3.7e-163 578.6 369 80.8
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 4.9e-163 578.2 405 74.8
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 6.3e-163 577.8 359 81.9
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 8.3e-163 577.4 398 74.1
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 8.3e-163 577.4 419 72.3
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 2.4e-162 575.9 401 76.6
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 7.0e-162 574.3 383 77.0
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 9.1e-162 573.9 393 76.3
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 3.5e-161 572.0 400 73.8
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 7.7e-161 570.9 398 74.1
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 2.9e-160 568.9 405 72.8
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 2.9e-160 568.9 406 73.6
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 3.8e-160 568.5 406 73.2
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 5.5e-159 564.7 407 74.0
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 1.2e-158 563.5 406 73.2
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 2.8e-158 562.4 408 72.8
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 3.6e-158 562.0 409 73.1
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 4.7e-158 561.6 408 72.1
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 8.0e-158 560.8 363 77.7
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 1.4e-157 560.1 408 71.8
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 1.4e-157 560.1 411 72.3
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 1.4e-157 560.1 399 73.2
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 1.8e-157 559.7 360 78.3
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 6.8e-157 557.8 380 74.2
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 3.4e-156 555.4 400 74.5
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 3.7e-155 552.0 428 68.7
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 4.6e-153 545.0 408 71.6
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 6.6e-152 541.2 362 74.3
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.5e-151 539.3 390 71.3
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 4.3e-151 538.5 370 76.8
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 2.1e-150 536.2 379 74.1
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 2.3e-149 532.7 401 71.6
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 8.9e-149 530.8 398 71.1
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 5.4e-146 521.5 306 85.6
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 1.2e-145 520.4 401 71.3
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 5.6e-143 511.5 398 66.8
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 3.1e-141 505.8 284 88.7
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 3.0e-136 489.2 337 72.7
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 8.9e-133 477.6 348 69.8
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 7.8e-129 464.5 375 65.6
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 2.1e-121 439.9 449 56.6
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 1.4e-109 400.6 350 57.4
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 5.9e-84 315.5 258 66.7
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 1.7e-83 313.9 245 71.0
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 1.6e-81 307.4 258 64.7
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 7.2e-74 282.0 160 85.0
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 2.4e-69 266.9 220 63.2
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 3.5e-68 263.1 171 77.8
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.8e-64 250.8 203 61.1
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 2.3e-64 250.4 227 60.8
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 1.0e-59 235.0 260 54.2
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 2.2e-59 233.8 165 77.0
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 4.1e-53 213.0 230 52.2
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 4.2e-50 203.0 205 55.1
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 9.8e-47 191.8 110 85.5
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 8.3e-46 188.7 110 84.5
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.0e-43 181.8 144 69.4
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.5e-42 177.9 393 34.9
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 8.0e-41 172.2 100 83.0
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.3e-40 170.6 128 69.5
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.2e-39 168.3 110 74.5
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.4e-39 166.8 166 58.4
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 4.4e-39 166.4 166 58.4
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 9.2e-37 158.7 349 31.2
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 5.0e-35 152.9 287 33.1
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 1.6e-33 147.9 266 34.6
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 7.8e-28 129.0 78 84.6
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.0e-23 114.4 58 96.6
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 2.0e-23 114.4 66 87.9
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 2.9e-22 110.5 255 32.5
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 9.2e-21 105.5 211 31.3
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-20 105.1 53 96.2
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 1.6e-20 104.8 55 92.7
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 4.6e-20 103.2 52 96.2
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 3.0e-19 100.5 87 62.1
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 6.6e-19 99.4 52 94.2
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.9e-18 97.8 48 97.9
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.9e-18 97.8 48 97.9
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 1.2e-17 95.1 130 41.5
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.6e-17 94.7 49 87.8
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 3.1e-16 90.5 51 78.4
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 8.9e-16 89.0 51 84.3
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.2e-15 88.6 50 86.0
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 4.4e-15 86.7 80 63.8
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 4.4e-15 86.7 80 63.8
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 9.9e-15 85.5 62 67.7
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 2.2e-14 84.3 69 60.9
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 6.4e-14 82.8 85 54.1
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 8.4e-14 82.4 194 29.9
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.1e-13 82.0 51 68.6
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 2.5e-10 70.9 40 87.5
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.2e-09 68.6 40 82.5


User provided reference genes

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