Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G075300 Prunus persica HOM05D006860 ORTHO05D009547 4.1e-156 554.7 280 100.0
MD06G1063700 Malus domestica HOM05D006860 ORTHO05D009547 7.1e-108 394.4 290 72.4
FAN04G1232 Fragaria x ananassa HOM05D006860 ORTHO05D009547 5.9e-94 348.2 285 67.4
FAN08G1076 Fragaria x ananassa HOM05D006860 ORTHO05D009547 3.8e-93 345.5 286 66.4
FvH4_5g00261 Fragaria vesca HOM05D006860 ORTHO05D009547 8.5e-93 344.4 285 67.0
RcHm_v2.0_Chr7g0202371 Rosa chinensis HOM05D006860 ORTHO05D009547 5.5e-92 341.7 286 66.1
FAN13G2943 Fragaria x ananassa HOM05D006860 ORTHO05D009547 2.7e-91 339.3 285 65.6
Dinv39106 Davidia involucrata HOM05D006860 ORTHO05D009547 2.9e-85 319.3 276 61.6
QL12p013422 Quercus lobata HOM05D006860 ORTHO05D009547 1.4e-84 317.0 282 61.3
FAN18G3824 Fragaria x ananassa HOM05D006860 ORTHO05D009547 1.7e-80 303.5 286 61.9
CANSAT21G2349 Cannabis sativa HOM05D006860 ORTHO05D009547 1.1e-79 300.8 281 58.4
Haze_07857 Corylus avellana HOM05D006860 ORTHO05D009547 1.3e-77 293.9 269 58.4
Rhsim07G0104800 Rhododendron simsii HOM05D006860 ORTHO05D009547 3.2e-76 289.3 269 60.2
Duzib084G1019 Durio zibethinus HOM05D006860 ORTHO05D009547 7.2e-76 288.1 273 57.5
TWI15G0511 Tripterygium wilfordii HOM05D006860 ORTHO05D009547 2.0e-73 280.0 287 57.1
Thecc.03G256700 Theobroma cacao HOM05D006860 ORTHO05D009547 5.7e-73 278.5 275 54.9
Potri.001G120700 Populus trichocarpa HOM05D006860 ORTHO05D009547 2.2e-72 276.6 276 54.0
PGSC0003DMG400004793 Solanum tuberosum HOM05D006860 ORTHO05D009547 3.1e-71 272.7 278 54.3
Solyc08g079050.2 Solanum lycopersicum HOM05D006860 ORTHO05D009547 2.6e-70 269.6 278 54.3
Sabra01G0093000 Salix brachista HOM05D006860 ORTHO05D009547 4.5e-70 268.9 279 53.0
Manes.01G076800 Manihot esculenta HOM05D006860 ORTHO05D009547 5.9e-70 268.5 282 52.8
Sopen08g027510 Solanum pennellii HOM05D006860 ORTHO05D009547 1.3e-69 267.3 278 53.6
Oeu026500.1 Olea europaea HOM05D006860 ORTHO05D009547 6.5e-69 265.0 267 53.6
Migut.A00808 Erythranthe guttata HOM05D006860 ORTHO05D009547 2.5e-68 263.1 272 53.3
Nn6g34033 Nelumbo nucifera HOM05D006860 ORTHO05D009547 1.2e-67 260.8 277 52.7
SGA_v2.0_scaffold120G32852 Striga asiatica HOM05D006860 ORTHO05D009547 6.1e-67 258.5 265 54.7
CiPaw.11G150700 Carya illinoinensis HOM05D006860 ORTHO05D009547 2.3e-66 256.5 224 59.4
CAN.G1217.16 Capsicum annuum HOM05D006860 ORTHO05D009547 5.2e-66 255.4 270 51.1
Aqoxy7G00725 Aquilegia oxysepala HOM05D006860 ORTHO05D009547 6.8e-66 255.0 275 53.5
Eucgr.D02032 Eucalyptus grandis HOM05D006860 ORTHO05D009547 9.8e-65 251.1 268 51.9
Lalb_Chr23g0276231 Lupinus albus HOM05D006860 ORTHO05D009547 6.3e-64 248.4 301 48.8
Glyma.15G182700 Glycine max HOM05D006860 ORTHO05D009547 1.8e-63 246.9 292 50.7
Aa31LG6G4580 Aethionema arabicum HOM05D006860 ORTHO05D009547 1.2e-62 244.2 285 49.5
Gohir.A03G009800 Gossypium hirsutum HOM05D006860 ORTHO05D009547 1.7e-61 240.4 260 50.4
Cc08_g12900 Coffea canephora HOM05D006860 ORTHO05D009547 2.9e-61 239.6 283 49.5
DCAR_004924 Daucus carota HOM05D006860 ORTHO05D009547 2.9e-61 239.6 256 52.7
Gohir.D03G160900 Gossypium hirsutum HOM05D006860 ORTHO05D009547 3.8e-61 239.2 260 50.4
Atru.chr9.1377 Acer truncatum HOM05D006860 ORTHO05D009547 5.0e-61 238.8 271 50.6
BraA01t01334Z Brassica rapa HOM05D006860 ORTHO05D009547 5.0e-61 238.8 276 48.9
EL10Ac5g13012 Beta vulgaris HOM05D006860 ORTHO05D009547 8.5e-61 238.0 265 50.2
C01p16890 Brassica napus HOM05D006860 ORTHO05D009547 8.5e-61 238.0 276 48.6
Gorai.003G169400 Gossypium raimondii HOM05D006860 ORTHO05D009547 1.1e-60 237.7 260 50.4
vmacro14104 Vaccinium macrocarpon HOM05D006860 ORTHO05D009547 1.9e-60 236.9 229 58.5
A01p13880 Brassica napus HOM05D006860 ORTHO05D009547 2.5e-60 236.5 276 48.2
Sp7g20650 Schrenkiella parvula HOM05D006860 ORTHO05D009547 3.2e-60 236.1 274 49.6
BolC1t01631H Brassica oleracea HOM05D006860 ORTHO05D009547 5.5e-60 235.3 276 48.2
THA.LOC104813362 Tarenaya hassleriana HOM05D006860 ORTHO05D009547 5.5e-60 235.3 289 46.7
Thhalv10026873m.g Eutrema salsugineum HOM05D006860 ORTHO05D009547 7.2e-60 235.0 274 49.3
Psat1g138880 Pisum sativum HOM05D006860 ORTHO05D009547 1.2e-59 234.2 284 49.6
BcaC09g51131 Brassica carinata HOM05D006860 ORTHO05D009547 2.1e-59 233.4 276 47.8
TAR375G0404 Trochodendron aralioides HOM05D006860 ORTHO05D009547 2.7e-59 233.0 233 57.5
CARHR229490 Cardamine hirsuta HOM05D006860 ORTHO05D009547 3.6e-59 232.6 273 49.5
PSO017G2204 Papaver somniferum HOM05D006860 ORTHO05D009547 3.6e-59 232.6 269 48.0
Carub.0007s1871 Capsella rubella HOM05D006860 ORTHO05D009547 1.4e-58 230.7 277 48.0
Nitab4.5_0012289g0010 Nicotiana tabacum HOM05D006860 ORTHO05D009547 1.4e-58 230.7 237 54.0
ECA233G1099 Erigeron canadensis HOM05D006860 ORTHO05D009547 6.8e-58 228.4 279 48.0
AL7G30980 Arabidopsis lyrata HOM05D006860 ORTHO05D009547 1.2e-57 227.6 277 46.6
PSO170G3955 Papaver somniferum HOM05D006860 ORTHO05D009547 4.4e-57 225.7 267 47.6
Ca_02280_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 7.5e-57 224.9 279 48.7
AT4G22600 Arabidopsis thaliana HOM05D006860 ORTHO05D009547 1.3e-56 224.2 277 45.8
Nitab4.5_0000993g0040 Nicotiana tabacum HOM05D006860 ORTHO05D009547 1.4e-55 220.7 219 55.7
arahy.Tifrunner.gnm1.ann1.26U38F Arachis hypogaea HOM05D006860 ORTHO05D009547 1.8e-55 220.3 283 47.7
arahy.Tifrunner.gnm1.ann1.NHN2FI Arachis hypogaea HOM05D006860 ORTHO05D009547 1.8e-55 220.3 283 47.7
Peaxi162Scf00002g00093 Petunia axillaris HOM05D006860 ORTHO05D009547 1.8e-55 220.3 226 50.9
PGR031G3062 Punica granatum HOM05D006860 ORTHO05D009547 4.1e-55 219.2 263 48.3
HanXRQChr13g0394991 Helianthus annuus HOM05D006860 ORTHO05D009547 9.1e-55 218.0 268 49.3
Lj6g0006421 Lotus japonicus HOM05D006860 ORTHO05D009547 9.1e-55 218.0 283 45.6
Phvul.009G223700 Phaseolus vulgaris HOM05D006860 ORTHO05D009547 1.2e-54 217.6 266 47.4
VMungo1309G2714 Vigna mungo HOM05D006860 ORTHO05D009547 2.7e-54 216.5 269 47.2
Nn4g23121 Nelumbo nucifera HOM05D006860 ORTHO05D009547 1.3e-53 214.2 220 52.7
Medtr2g044090 Medicago truncatula HOM05D006860 ORTHO05D009547 2.9e-53 213.0 284 45.4
Actinidia27452 Actinidia chinensis HOM05D006860 ORTHO05D009547 1.9e-52 210.3 194 56.7
Ciclev10024312m.g Citrus clementina HOM05D006860 ORTHO05D009547 9.5e-52 208.0 273 47.3
unitig_27.g24920 Utricularia gibba HOM05D006860 ORTHO05D009547 7.5e-49 198.4 259 45.2
Ah.12g056480 Amaranthus hybridus HOM05D006860 ORTHO05D009547 9.8e-49 198.0 241 46.1
Cpa.g.sc29.129 Carica papaya HOM05D006860 ORTHO05D009547 2.9e-48 196.4 261 48.3
TPR.G24674 Trifolium pratense HOM05D006860 ORTHO05D009547 1.3e-45 187.6 247 45.3
HPP92_025603 Vanilla planifolia HOM05D006860 ORTHO05D009547 2.5e-44 183.3 281 38.8
Sc07g0009390 Simmondsia chinensis HOM05D000685 ORTHO05D000511 1.9e-39 167.2 239 44.8
HPP92_025643 Vanilla planifolia HOM05D006860 ORTHO05D009547 1.2e-38 164.5 272 39.0
Zm00001eb249700 Zea mays HOM05D006860 ORTHO05D009547 1.2e-30 137.9 263 35.0
COL.COLO4_37211 Corchorus olitorius HOM05D006860 ORTHO05D009547 2.3e-29 133.7 117 57.3
Os02g0661300 Oryza sativa ssp. japonica HOM05D006860 ORTHO05D009547 3.1e-26 123.2 265 32.5
Sp7g20630 Schrenkiella parvula HOM05D006860 ORTHO05D015488 5.8e-25 119.0 261 32.6
BcaB03g15470 Brassica carinata HOM05D006860 ORTHO05D009547 1.6e-22 110.9 247 33.2
BcaB03g15468 Brassica carinata HOM05D000561 ORTHO05D009547 7.8e-22 108.6 244 32.4
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 3.9e-21 106.3 155 41.9
Ciclev10023898m.g Citrus clementina HOM05D006860 ORTHO05D009547 1.6e-19 100.9 132 46.2
A03p53590 Brassica napus HOM05D006860 ORTHO05D015488 2.1e-19 100.5 285 29.5
BraA03t14423Z Brassica rapa HOM05D006860 ORTHO05D028065 3.6e-19 99.8 266 30.5
AUR62007478 Chenopodium quinoa HOM05D006860 ORTHO05D009547 3.6e-19 99.8 102 51.0
C07p51920 Brassica napus HOM05D006860 ORTHO05D015488 4.7e-19 99.4 284 29.2
BolC7t45692H Brassica oleracea HOM05D006860 ORTHO05D015488 4.7e-19 99.4 284 29.2
BraA03t14425Z Brassica rapa HOM05D006860 ORTHO05D015488 6.2e-19 99.0 284 28.9
BcaNung01686 Brassica carinata HOM05D006860 ORTHO05D009547 1.1e-18 98.2 266 30.1
C07p51900 Brassica napus HOM05D006860 ORTHO05D015488 1.4e-18 97.8 260 30.8
BcaNung01688 Brassica carinata HOM05D006860 ORTHO05D015488 1.8e-18 97.4 260 30.0
BcaNung02492 Brassica carinata HOM05D006860 ORTHO05D015488 1.8e-18 97.4 260 30.4
C07p51910 Brassica napus HOM05D006860 ORTHO05D028065 2.4e-18 97.1 276 29.7
BraA03t14422Z Brassica rapa HOM05D006860 ORTHO05D015488 3.1e-18 96.7 260 30.4
BcaNung02490 Brassica carinata HOM05D006860 ORTHO05D015488 5.2e-18 95.9 283 29.0
Carub.0008s2329 Capsella rubella HOM05D006860 ORTHO05D009547 6.8e-18 95.5 254 26.0
A03p53560 Brassica napus HOM05D006860 ORTHO05D015488 8.9e-18 95.1 260 30.4
BolC7t45689H Brassica oleracea HOM05D006860 ORTHO05D015488 8.9e-18 95.1 260 30.4
A03p53570 Brassica napus HOM05D006860 ORTHO05D028065 3.4e-17 93.2 266 28.9
BolC7t45690H Brassica oleracea HOM05D006860 ORTHO05D028065 4.4e-17 92.8 276 28.6
BcaNung01685 Brassica carinata HOM05D006860 ORTHO05D009547 1.7e-16 90.9 266 27.8
Ciclev10010734m.g Citrus clementina HOM05D006860 ORTHO05D009547 3.5e-14 83.2 105 47.6
EL10Ac8g19726 Beta vulgaris HOM05D006860 ORTHO05D009547 3.9e-13 79.7 72 55.6
TPR.G18947 Trifolium pratense HOM05D006860 ORTHO05D009547 5.6e-12 75.9 68 58.8
SGA_v2.0_scaffold16G07543 Striga asiatica HOM05D006860 ORTHO05D009547 1.6e-11 74.3 60 58.3
Ca_27374_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 6.9e-10 68.9 57 57.9
Ciclev10018172m.g Citrus clementina HOM05D006860 ORTHO05D009547 6.9e-10 68.9 67 53.7
SGA_v2.0_scaffold15G07181 Striga asiatica HOM05D011902 ORTHO05D009547 6.9e-10 68.9 57 56.1
Ca_19832_v3 Cicer arietinum L. HOM05D000030 ORTHO05D000009 3.4e-09 66.6 57 56.1
SGA_v2.0_scaffold191G40457 Striga asiatica HOM05D000592 ORTHO05D001485 9.9e-09 65.1 59 57.6
SMO271G0144 Selaginella moellendorffii HOM05D000828 ORTHO05D000623 1.1e-07 61.6 248 22.6
ATR0012G056 Amborella trichopoda HOM05D000828 ORTHO05D000623 3.5e-06 56.6 240 24.2
AagrBONN_evm.TU.Sc2ySwM_117.3641 Anthoceros agrestis HOM05D000382 ORTHO05D000623 3.5e-06 56.6 244 23.8
SGA_v2.0_scaffold7G03921 Striga asiatica HOM05D002020 ORTHO05D002046 6.0e-06 55.8 51 56.9


User provided reference genes

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