Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 2.0e-152 542.3 262 100.0
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.1e-117 426.0 262 77.1
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 1.3e-116 423.3 262 78.6
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 1.8e-116 422.9 262 76.3
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.8e-116 422.9 262 76.3
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 5.6e-115 417.9 261 74.7
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 7.4e-115 417.5 262 76.0
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.8e-113 412.9 221 89.1
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 9.0e-113 410.6 254 76.0
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.6e-112 409.1 251 76.5
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 4.5e-112 408.3 261 75.1
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 9.3e-110 400.6 260 72.7
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 4.3e-107 391.7 263 71.5
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 7.4e-107 391.0 261 71.3
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 4.8e-106 388.3 262 70.6
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 4.0e-105 385.2 262 71.4
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 1.2e-104 383.6 261 72.8
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.7e-103 379.8 262 71.0
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 8.4e-103 377.5 260 69.2
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.1e-102 377.1 223 78.5
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.4e-102 376.7 222 78.4
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 1.4e-102 376.7 260 66.9
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.4e-102 376.7 260 67.7
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 1.6e-101 373.2 261 67.8
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 2.1e-101 372.9 262 69.1
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 1.8e-100 369.8 261 67.0
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 3.0e-100 369.0 298 62.1
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 3.0e-100 369.0 264 68.2
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 6.7e-100 367.9 262 66.4
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 8.7e-100 367.5 262 66.8
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 1.5e-99 366.7 262 67.6
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 1.5e-99 366.7 262 68.3
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.9e-99 366.3 260 66.9
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 1.6e-98 363.2 262 66.4
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 2.2e-98 362.8 263 68.4
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 3.7e-98 362.1 262 65.6
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.4e-97 360.1 260 67.7
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 3.1e-97 359.0 262 67.6
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 4.1e-97 358.6 262 66.4
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 9.0e-97 357.5 262 67.2
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 3.4e-96 355.5 258 64.7
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.4e-96 355.5 262 66.4
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 4.5e-96 355.1 262 66.8
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 4.5e-96 355.1 261 65.5
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 7.7e-96 354.4 262 66.4
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.0e-95 354.0 262 67.2
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 1.7e-95 353.2 263 66.9
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 2.9e-95 352.4 279 62.0
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 5.0e-95 351.7 262 65.3
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 6.5e-95 351.3 260 63.8
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 6.5e-95 351.3 262 66.4
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 5.5e-94 348.2 292 60.6
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 2.1e-93 346.3 260 63.8
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 3.6e-93 345.5 249 64.7
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 1.4e-92 343.6 265 64.5
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 1.4e-92 343.6 260 63.1
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 1.8e-92 343.2 262 63.4
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 1.8e-92 343.2 260 62.3
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.9e-92 342.0 274 61.3
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 6.7e-92 341.3 244 68.0
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 1.5e-91 340.1 262 64.9
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 4.3e-91 338.6 220 71.4
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 7.4e-91 337.8 241 65.1
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 2.8e-90 335.9 259 61.8
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 3.7e-90 335.5 260 61.5
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 8.2e-90 334.3 261 59.8
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 1.8e-89 333.2 238 65.5
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 3.1e-89 332.4 260 62.7
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 3.1e-89 332.4 241 67.2
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 6.9e-89 331.3 264 61.4
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 2.0e-88 329.7 280 57.5
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 3.4e-88 328.9 260 59.2
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 3.4e-88 328.9 260 58.8
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 7.7e-88 327.8 278 57.6
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 3.8e-87 325.5 260 58.8
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.1e-86 323.9 260 60.0
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.1e-86 323.9 326 52.5
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 1.4e-86 323.6 260 59.6
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 5.5e-86 321.6 260 58.8
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.2e-85 320.5 240 62.9
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.1e-85 319.7 232 63.4
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.9e-84 315.5 240 61.7
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.5e-83 313.5 258 59.7
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 2.2e-82 309.7 302 52.3
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 3.7e-82 308.9 200 72.0
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 4.8e-82 308.5 256 57.8
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 5.3e-81 305.1 260 60.0
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 1.2e-80 303.9 260 55.4
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 1.2e-80 303.9 261 54.8
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 2.0e-80 303.1 221 60.6
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 7.7e-80 301.2 233 65.2
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 3.8e-79 298.9 222 63.5
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 4.2e-78 295.4 261 56.3
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 9.4e-78 294.3 260 55.8
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 6.1e-77 291.6 277 54.2
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 8.0e-77 291.2 261 55.9
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.8e-76 290.0 242 57.4
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 7.4e-75 284.6 213 63.4
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.3e-74 283.9 187 73.3
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 7.7e-72 274.6 200 65.5
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 1.0e-71 274.2 300 49.7
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 2.5e-70 269.6 221 58.4
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 3.6e-69 265.8 183 68.9
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 6.1e-69 265.0 224 57.1
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 2.6e-67 259.6 182 67.6
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 5.7e-67 258.5 267 52.1
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.6e-64 250.4 188 64.9
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.2e-59 234.2 195 57.9
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 5.7e-59 231.9 223 52.9
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 3.7e-58 229.2 191 58.6
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.2e-56 224.2 173 63.0
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 3.8e-55 219.2 152 69.7
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 5.0e-55 218.8 187 55.1
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 3.3e-54 216.1 170 64.1
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 3.3e-54 216.1 178 61.2
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 1.5e-51 207.2 212 46.7
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 2.6e-51 206.5 227 47.1
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 2.6e-51 206.5 220 48.6
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.8e-50 203.0 223 47.5
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 1.1e-49 201.1 187 52.4
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 4.1e-49 199.1 141 65.2
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 1.2e-48 197.6 115 79.1
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 5.9e-48 195.3 154 63.0
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 7.8e-48 194.9 141 61.0
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 5.0e-47 192.2 130 68.5
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 1.6e-45 187.2 252 42.5
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 2.9e-42 176.4 135 64.4
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 5.0e-39 165.6 200 44.5
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 4.7e-37 159.1 129 58.9
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 1.2e-35 154.5 217 40.1
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 4.1e-33 146.0 113 60.2
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.6e-32 144.1 85 78.8
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.0e-31 141.4 85 77.6
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.3e-31 141.0 85 77.6
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.9e-31 139.4 85 75.3
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 7.3e-30 135.2 241 37.3
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 2.8e-29 133.3 150 50.7
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 2.3e-28 130.2 92 67.4
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 6.8e-28 128.6 354 28.5
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 2.6e-27 126.7 297 30.6
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 3.4e-27 126.3 221 33.5
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.9e-26 123.2 114 53.5
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 6.4e-26 122.1 97 59.8
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 1.7e-23 114.0 83 67.5
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.5e-22 110.2 66 66.7
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.3e-22 109.8 66 69.7
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.6e-22 108.2 66 68.2
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 1.1e-20 104.8 75 61.3
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 1.1e-20 104.8 75 61.3
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.1e-20 103.2 69 69.6
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.2e-19 101.3 84 59.5
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.6e-19 100.1 71 64.8
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 1.3e-18 97.8 63 65.1
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.5e-14 84.3 59 64.4
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 7.3e-14 82.0 83 53.0
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 4.0e-12 76.3 56 60.7
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 2.2e-10 70.5 44 65.9
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 7.1e-09 65.5 45 62.2
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 2.7e-08 63.5 60 51.7
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 1.3e-07 61.2 75 45.3
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 7.3e-06 55.5 137 27.0


User provided reference genes

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