Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G064100 Prunus persica HOM05D002756 ORTHO05D002896 1.2e-232 809.7 482 100.0
MD04G1061300 Malus domestica HOM05D002756 ORTHO05D002896 1.3e-144 517.3 482 71.0
RcHm_v2.0_Chr7g0204301 Rosa chinensis HOM05D002756 ORTHO05D002896 4.8e-136 488.8 484 66.5
FvH4_5g19610 Fragaria vesca HOM05D002756 ORTHO05D002896 5.8e-134 481.9 484 66.5
FAN18G1828 Fragaria x ananassa HOM05D002756 ORTHO05D002896 3.0e-130 469.5 484 65.5
FAN04G0448 Fragaria x ananassa HOM05D002756 ORTHO05D002896 1.3e-128 464.2 484 64.7
FAN08G2407 Fragaria x ananassa HOM05D002756 ORTHO05D002896 2.2e-128 463.4 484 64.7
FAN13G0091 Fragaria x ananassa HOM05D002756 ORTHO05D002896 1.8e-127 460.3 484 64.5
QL12p010923 Quercus lobata HOM05D002756 ORTHO05D002896 4.8e-104 382.5 502 55.6
QL12p011144 Quercus lobata HOM05D002756 ORTHO05D002896 4.8e-104 382.5 502 55.6
Sabra03G0049800 Salix brachista HOM05D002756 ORTHO05D002896 1.8e-82 310.8 486 49.4
Potri.001G155000 Populus trichocarpa HOM05D002756 ORTHO05D002896 1.6e-78 297.7 491 49.1
CiPaw.12G049400 Carya illinoinensis HOM05D002756 ORTHO05D002896 1.3e-77 294.7 498 48.6
Manes.02G041900 Manihot esculenta HOM05D002756 ORTHO05D002896 5.2e-74 282.7 503 43.1
Duzib205G1850 Durio zibethinus HOM05D002756 ORTHO05D002896 2.6e-73 280.4 484 48.3
CiPaw.11G082800 Carya illinoinensis HOM05D002756 ORTHO05D002896 7.5e-73 278.9 493 47.3
Cfa012698 Carpinus fangiana HOM05D002756 ORTHO05D002896 9.8e-73 278.5 499 50.7
Duzib084G0904 Durio zibethinus HOM05D002756 ORTHO05D002896 2.9e-72 276.9 485 47.8
Ciclev10019703m.g Citrus clementina HOM05D002756 ORTHO05D002896 6.4e-72 275.8 507 46.2
Eucgr.E00399 Eucalyptus grandis HOM05D002756 ORTHO05D002896 2.4e-71 273.9 491 48.5
Duzib068G0659 Durio zibethinus HOM05D002756 ORTHO05D002896 2.7e-70 270.4 485 44.7
Thecc.03G246800 Theobroma cacao HOM05D002756 ORTHO05D002896 6.6e-69 265.8 488 50.2
Atru.chr9.1260 Acer truncatum HOM05D002756 ORTHO05D002896 1.1e-68 265.0 494 45.3
CSS0004447 Camellia sinensis var. sinensis HOM05D002756 ORTHO05D002896 2.5e-68 263.8 505 43.6
Haze_07935 Corylus avellana HOM05D002756 ORTHO05D002896 2.5e-68 263.8 495 47.9
Potri.003G079900 Populus trichocarpa HOM05D002756 ORTHO05D002896 2.5e-68 263.8 498 46.2
TAR375G0301 Trochodendron aralioides HOM05D002756 ORTHO05D002896 7.3e-68 262.3 497 41.2
TAR629G2869 Trochodendron aralioides HOM05D002756 ORTHO05D002896 1.6e-67 261.2 500 41.8
TWI81G0105 Tripterygium wilfordii HOM05D002756 ORTHO05D002896 4.7e-67 259.6 476 44.5
TAR629G0742 Trochodendron aralioides HOM05D002756 ORTHO05D002896 1.5e-65 254.6 498 42.6
Sabra01G0124600 Salix brachista HOM05D002756 ORTHO05D002896 8.3e-64 248.8 481 46.2
Aqoxy3G02766 Aquilegia oxysepala HOM05D002756 ORTHO05D002896 1.1e-60 238.4 503 39.6
Nn6g33844 Nelumbo nucifera HOM05D002756 ORTHO05D002896 1.2e-59 235.0 507 41.4
ClCG10G002500 Citrullus lanatus HOM05D002756 ORTHO05D002896 8.1e-59 232.3 515 42.3
Nn6g33847 Nelumbo nucifera HOM05D002756 ORTHO05D002896 3.4e-57 226.9 504 40.1
Cc08_g12030 Coffea canephora HOM05D002756 ORTHO05D002896 3.7e-56 223.4 492 37.2
Dinv39178 Davidia involucrata HOM05D002756 ORTHO05D002896 4.9e-56 223.0 478 46.0
CANSAT21G1520 Cannabis sativa HOM05D002756 ORTHO05D002896 1.1e-55 221.9 486 39.9
Lalb_Chr05g0221081 Lupinus albus HOM05D002756 ORTHO05D002896 3.5e-54 216.9 520 36.7
PGR042G1682 Punica granatum HOM05D002756 ORTHO05D002896 4.3e-52 209.9 510 40.0
CsaV3_3G002530 Cucumis sativus L. HOM05D002756 ORTHO05D002896 8.9e-50 202.2 494 39.3
Hma1.2p1_1196F.1_g266030 Hydrangea macrophylla HOM05D002756 ORTHO05D002896 1.3e-48 198.4 498 35.9
Hma1.2p1_1335F.1_g276370 Hydrangea macrophylla HOM05D002756 ORTHO05D002896 1.3e-48 198.4 498 35.9
Sed0017596 Sechium edule HOM05D002756 ORTHO05D002896 1.7e-48 198.0 511 38.4
Lj4g0006676 Lotus japonicus HOM05D002756 ORTHO05D002896 8.4e-48 195.7 512 37.3
Ah.12g054420 Amaranthus hybridus HOM05D002756 ORTHO05D002896 7.1e-47 192.6 578 34.9
GSVIVG01005822001 Vitis vinifera HOM05D002756 ORTHO05D002896 2.1e-46 191.0 480 38.3
EL10Ac5g12331 Beta vulgaris HOM05D002756 ORTHO05D002896 4.6e-46 189.9 575 32.0
Dinv21670 Davidia involucrata HOM05D002756 ORTHO05D002896 6.0e-46 189.5 490 37.3
Peaxi162Scf00346g00062 Petunia axillaris HOM05D002756 ORTHO05D002896 6.0e-46 189.5 510 40.4
vmacro00014 Vaccinium macrocarpon HOM05D002756 ORTHO05D002896 1.7e-45 188.0 496 35.1
PSO732G0525 Papaver somniferum HOM05D002756 ORTHO05D002896 5.1e-45 186.4 541 34.4
Nitab4.5_0007283g0010 Nicotiana tabacum HOM05D002756 ORTHO05D002896 2.5e-44 184.1 509 37.9
Rhsim11G0050900 Rhododendron simsii HOM05D002756 ORTHO05D002896 2.5e-44 184.1 496 36.3
AUR62007124 Chenopodium quinoa HOM05D002756 ORTHO05D002896 1.3e-43 181.8 553 33.8
Lalb_Chr09g0329931 Lupinus albus HOM05D002756 ORTHO05D002896 4.8e-43 179.9 507 33.3
PSO675G5676 Papaver somniferum HOM05D002756 ORTHO05D002896 1.1e-42 178.7 541 34.4
Lj8C270T8 Lonicera japonica HOM05D002756 ORTHO05D002896 3.1e-42 177.2 494 38.3
Nitab4.5_0002601g0020 Nicotiana tabacum HOM05D002756 ORTHO05D002896 9.0e-42 175.6 501 39.3
MD06G1054900 Malus domestica HOM05D002756 ORTHO05D002896 1.2e-41 175.3 182 59.9
MELO3C013922.2 Cucumis melo HOM05D002756 ORTHO05D002896 3.8e-40 170.2 513 33.1
Actinidia14397 Actinidia chinensis HOM05D002756 ORTHO05D002896 6.4e-40 169.5 505 31.9
Oeu017053.1 Olea europaea HOM05D002756 ORTHO05D002896 2.1e-38 164.5 503 36.6
Gohir.D12G217500 Gossypium hirsutum HOM05D002756 ORTHO05D002896 2.7e-38 164.1 485 34.8
Gorai.008G233100 Gossypium raimondii HOM05D002756 ORTHO05D002896 1.7e-37 161.4 477 37.7
AUR62019993 Chenopodium quinoa HOM05D002756 ORTHO05D002896 3.0e-37 160.6 563 33.0
PGSC0003DMG400026237 Solanum tuberosum HOM05D002756 ORTHO05D002896 3.0e-37 160.6 491 35.6
COL.COLO4_37105 Corchorus olitorius HOM05D002756 ORTHO05D002896 2.1e-35 154.5 428 38.1
Solyc08g078290.1 Solanum lycopersicum HOM05D002756 ORTHO05D002896 2.1e-35 154.5 484 33.9
Sopen08g026790 Solanum pennellii HOM05D002756 ORTHO05D002896 4.8e-35 153.3 488 33.6
CAN.G1178.4 Capsicum annuum HOM05D002756 ORTHO05D002896 1.1e-34 152.1 496 33.9
VMungo0251G0835 Vigna mungo HOM05D002756 ORTHO05D002896 1.1e-34 152.1 587 31.7
Gohir.A12G214900 Gossypium hirsutum HOM05D002756 ORTHO05D002896 2.4e-34 151.0 481 38.7
Sc07g0009180 Simmondsia chinensis HOM05D002756 ORTHO05D002896 1.5e-33 148.3 543 30.8
vmacro22653 Vaccinium macrocarpon HOM05D002756 ORTHO05D002896 3.4e-33 147.1 336 37.5
Phvul.003G223300 Phaseolus vulgaris HOM05D002756 ORTHO05D002896 9.9e-33 145.6 581 31.0
Dinv44072 Davidia involucrata HOM05D001866 ORTHO05D002896 1.1e-31 142.1 502 34.9
DCAR_008518 Daucus carota HOM05D002756 ORTHO05D002896 4.2e-31 140.2 499 33.3
CSS0042834 Camellia sinensis var. sinensis HOM05D002756 ORTHO05D002896 9.3e-31 139.0 196 46.4
Actinidia02163 Actinidia chinensis HOM05D002756 ORTHO05D002896 1.3e-29 135.2 229 40.2
Glyma.17G144800 Glycine max HOM05D002756 ORTHO05D002896 1.8e-29 134.8 581 33.0
Thecc.01G392600 Theobroma cacao HOM05D002756 ORTHO05D002896 2.5e-28 131.0 476 30.7
Lalb_Chr16g0386581 Lupinus albus HOM05D002756 ORTHO05D002896 4.0e-26 123.6 227 40.5
GSVIVG01018249001 Vitis vinifera HOM05D001866 ORTHO05D001915 4.0e-26 123.6 427 29.5
HanXRQChr17g0549241 Helianthus annuus HOM05D002756 ORTHO05D002896 5.3e-26 123.2 476 30.7
Potri.002G136600 Populus trichocarpa HOM05D002756 ORTHO05D002896 1.1e-23 115.5 512 27.7
Glyma.01G122700 Glycine max HOM05D002756 ORTHO05D002896 1.4e-23 115.2 514 30.5
Duzib138G1759 Durio zibethinus HOM05D002756 ORTHO05D002896 1.2e-22 112.1 470 34.3
arahy.Tifrunner.gnm1.ann1.4S09TY Arachis hypogaea HOM05D002756 ORTHO05D002896 1.6e-22 111.7 458 34.3
Haze_02809 Corylus avellana HOM05D002756 ORTHO05D002896 2.7e-22 110.9 549 27.3
SGA_v2.0_scaffold199G41225 Striga asiatica HOM05D002756 ORTHO05D002896 1.8e-21 108.2 486 33.5
Actinidia12652 Actinidia chinensis HOM05D002756 ORTHO05D002896 8.7e-21 105.9 495 26.7
Medtr4g100530 Medicago truncatula HOM05D002756 ORTHO05D002896 2.5e-20 104.4 493 29.4
Migut.A01149 Erythranthe guttata HOM05D002756 ORTHO05D002896 1.3e-19 102.1 479 28.2
FAN06G0867 Fragaria x ananassa HOM05D002756 ORTHO05D008812 4.8e-19 100.1 484 27.7
TPR.G37630 Trifolium pratense HOM05D002756 ORTHO05D002896 4.8e-19 100.1 502 31.7
FAN06G1585 Fragaria x ananassa HOM05D002756 ORTHO05D002896 6.2e-19 99.8 484 27.7
arahy.Tifrunner.gnm1.ann1.X9KLSS Arachis hypogaea HOM05D002756 ORTHO05D002896 2.4e-18 97.8 463 32.0
FvH4_7g09850 Fragaria vesca HOM05D002756 ORTHO05D002896 2.4e-18 97.8 484 27.5
FAN01G1526 Fragaria x ananassa HOM05D002756 ORTHO05D002896 2.4e-18 97.8 471 27.0
Prupe.2G127500 Prunus persica HOM05D002756 ORTHO05D002896 2.4e-18 97.8 533 26.5
MD07G1103700 Malus domestica HOM05D002756 ORTHO05D002896 5.3e-18 96.7 491 26.7
PSO063G5636 Papaver somniferum HOM05D002756 ORTHO05D002896 5.3e-18 96.7 609 26.9
CSS0007822 Camellia sinensis var. sinensis HOM05D002756 ORTHO05D002896 9.0e-18 95.9 490 29.6
CDE02G3283 Ceratophyllum demersum HOM05D002756 ORTHO05D002896 1.2e-17 95.5 181 38.7
Ciclev10024461m.g Citrus clementina HOM05D001866 ORTHO05D001915 1.2e-17 95.5 455 27.3
FAN10G1547 Fragaria x ananassa HOM05D002756 ORTHO05D008812 1.2e-17 95.5 488 27.7
Sabra14G0033200 Salix brachista HOM05D002756 ORTHO05D002896 2.6e-17 94.4 545 29.0
FAN10G3136 Fragaria x ananassa HOM05D002756 ORTHO05D008812 3.4e-17 94.0 488 27.7
Atru.chr5.159 Acer truncatum HOM05D002756 ORTHO05D002896 5.8e-17 93.2 546 25.6
Gohir.D11G080700 Gossypium hirsutum HOM05D002756 ORTHO05D002896 7.6e-17 92.8 467 30.8
Gorai.007G086500 Gossypium raimondii HOM05D002756 ORTHO05D002896 7.6e-17 92.8 468 31.0
Ca_21993_v3 Cicer arietinum L. HOM05D002756 ORTHO05D002896 3.8e-16 90.5 450 30.2
CiPaw.13G027800 Carya illinoinensis HOM05D002756 ORTHO05D002896 6.5e-16 89.7 639 25.5
arahy.Tifrunner.gnm1.ann1.73EWJC Arachis hypogaea HOM05D002756 ORTHO05D002896 8.4e-16 89.4 452 29.9
Gohir.D11G080900 Gossypium hirsutum HOM05D002756 ORTHO05D002896 1.1e-15 89.0 469 30.5
Peaxi162Scf00190g00123 Petunia axillaris HOM05D002756 ORTHO05D002896 1.4e-15 88.6 476 29.4
Psat4g073480 Pisum sativum HOM05D002756 ORTHO05D002896 2.5e-15 87.8 495 28.9
Manes.01G272300 Manihot esculenta HOM05D002756 ORTHO05D002896 3.2e-15 87.4 498 26.5
PSO782G0082 Papaver somniferum HOM05D002756 ORTHO05D002896 3.2e-15 87.4 608 25.8
Potri.014G045300 Populus trichocarpa HOM05D002756 ORTHO05D002896 5.5e-15 86.7 567 27.2
arahy.Tifrunner.gnm1.ann1.X0SKZJ Arachis hypogaea HOM05D002756 ORTHO05D002896 9.3e-15 85.9 452 31.2
Cc02_g24920 Coffea canephora HOM05D002756 ORTHO05D002896 1.2e-14 85.5 487 25.5
Cpa.g.sc89.63 Carica papaya HOM05D002756 ORTHO05D002896 2.1e-14 84.7 196 37.2
FAN03G0252 Fragaria x ananassa HOM05D002756 ORTHO05D002896 2.1e-14 84.7 458 27.7
THA.LOC104807911 Tarenaya hassleriana HOM05D002756 ORTHO05D002896 3.5e-14 84.0 520 30.2
CDE04G1179 Ceratophyllum demersum HOM05D000033 ORTHO05D002896 4.6e-14 83.6 479 25.7
Lj1g0002162 Lotus japonicus HOM05D002756 ORTHO05D002896 6.1e-14 83.2 173 36.4
Nitab4.5_0000618g0140 Nicotiana tabacum HOM05D002756 ORTHO05D002896 7.9e-14 82.8 486 29.8
PGR042G0175 Punica granatum HOM05D002756 ORTHO05D002896 7.9e-14 82.8 546 25.6
Glyma.19G105000 Glycine max HOM05D002756 ORTHO05D002896 1.0e-13 82.4 496 30.0
HanXRQChr06g0164481 Helianthus annuus HOM05D002756 ORTHO05D002896 3.0e-13 80.9 468 28.8
QL04p030920 Quercus lobata HOM05D002756 ORTHO05D002896 3.9e-13 80.5 536 30.2
Gorai.N024700 Gossypium raimondii HOM05D002756 ORTHO05D002896 1.1e-12 79.0 158 37.3
MSTRG.17138 Avicennia marina HOM05D002756 ORTHO05D002896 1.5e-12 78.6 456 27.2
Cpa.g.sc101.27 Carica papaya HOM05D002756 ORTHO05D002896 7.4e-12 76.3 295 28.1
Phvul.008G045300 Phaseolus vulgaris HOM05D002756 ORTHO05D002896 1.3e-11 75.5 132 37.9
VMungo1383G3385 Vigna mungo HOM05D002756 ORTHO05D002896 1.6e-11 75.1 131 38.2
Gohir.D03G166200 Gossypium hirsutum HOM05D002756 ORTHO05D002896 2.8e-11 74.3 98 50.0
Gohir.A03G006140 Gossypium hirsutum HOM05D002756 ORTHO05D002896 6.3e-11 73.2 104 48.1
Lalb_Chr01g0021551 Lupinus albus HOM05D002756 ORTHO05D002896 6.3e-11 73.2 156 35.9
TWI59G1099 Tripterygium wilfordii HOM05D002756 ORTHO05D002896 1.1e-10 72.4 181 35.9
Glyma.05G062801 Glycine max HOM05D002756 ORTHO05D002896 1.4e-10 72.0 328 32.0
Glyma.18G253700 Glycine max HOM05D002756 ORTHO05D002896 1.4e-10 72.0 180 35.6
CAN.G62.18 Capsicum annuum HOM05D002756 ORTHO05D002896 4.1e-10 70.5 181 38.1
Gorai.003G175700 Gossypium raimondii HOM05D002756 ORTHO05D002896 5.3e-10 70.1 102 47.1
ATR0057G080 Amborella trichopoda HOM05D002756 ORTHO05D002896 1.5e-09 68.6 390 34.1
Gorai.003G175800 Gossypium raimondii HOM05D002756 ORTHO05D002896 1.5e-09 68.6 100 45.0
SEGI_18028 Sequoiadendron giganteum HOM05D002756 ORTHO05D002896 3.4e-09 67.4 150 34.7
Cfa011088 Carpinus fangiana HOM05D002756 ORTHO05D002896 4.5e-09 67.0 585 25.5
Sp7g17320 Schrenkiella parvula HOM05D002756 ORTHO05D002896 7.7e-09 66.2 489 27.8
Gohir.A03G006260 Gossypium hirsutum HOM05D002756 ORTHO05D002896 1.7e-08 65.1 156 36.5
Nitab4.5_0002206g0010 Nicotiana tabacum HOM05D002756 ORTHO05D002896 1.7e-08 65.1 478 27.4
TPR.G12184 Trifolium pratense HOM05D002756 ORTHO05D002896 2.2e-08 64.7 214 36.4
Rhsim01G0138600 Rhododendron simsii HOM05D002756 ORTHO05D002896 2.9e-08 64.3 496 28.0
Manes.05G053100 Manihot esculenta HOM05D002756 ORTHO05D002896 3.8e-08 63.9 247 28.3
Lalb_Chr16g0386561 Lupinus albus HOM05D002756 ORTHO05D002896 5.0e-08 63.5 80 48.8
HPP92_025690 Vanilla planifolia HOM05D002756 ORTHO05D002896 6.5e-08 63.2 153 34.0
ClCG06G002590 Citrullus lanatus HOM05D002756 ORTHO05D002896 8.5e-08 62.8 448 28.6
AT4G16790 Arabidopsis thaliana HOM05D002756 ORTHO05D002896 1.9e-07 61.6 97 46.4
BcaC07g38020 Brassica carinata HOM05D002756 ORTHO05D002896 2.5e-07 61.2 84 47.6
BolC8t48410H Brassica oleracea HOM05D002756 ORTHO05D002896 2.5e-07 61.2 84 47.6
A08p12710 Brassica napus HOM05D002756 ORTHO05D002896 4.2e-07 60.5 84 47.6
BraA08t33260Z Brassica rapa HOM05D002756 ORTHO05D002896 4.2e-07 60.5 84 47.6
CARHR223410 Cardamine hirsuta HOM05D002756 ORTHO05D002896 4.2e-07 60.5 44 72.7
DCAR_029769 Daucus carota HOM05D002756 ORTHO05D002896 4.2e-07 60.5 157 35.0
Actinidia33498 Actinidia chinensis HOM05D002756 ORTHO05D002896 5.5e-07 60.1 70 42.9
COL.COLO4_12427 Corchorus olitorius HOM05D002756 ORTHO05D002896 7.2e-07 59.7 473 25.2
AL7G37860 Arabidopsis lyrata HOM05D002756 ORTHO05D002896 9.4e-07 59.3 488 27.0
BcaB04g18397 Brassica carinata HOM05D002756 ORTHO05D002896 1.6e-06 58.5 83 50.6
Aa31LG2G12970 Aethionema arabicum HOM05D002756 ORTHO05D002896 3.6e-06 57.4 490 27.3
Nitab4.5_0000506g0050 Nicotiana tabacum HOM05D002756 ORTHO05D002896 3.6e-06 57.4 172 34.3
Sabra02G0105900 Salix brachista HOM05D002756 ORTHO05D002896 6.1e-06 56.6 322 23.6
Solyc06g060820.2 Solanum lycopersicum HOM05D002756 ORTHO05D002896 6.1e-06 56.6 100 42.0
BcaC09g50418 Brassica carinata HOM05D002756 ORTHO05D002896 7.9e-06 56.2 493 26.0
C01p25660 Brassica napus HOM05D002756 ORTHO05D002896 7.9e-06 56.2 493 26.0
Glyma.09G241900 Glycine max HOM05D002756 ORTHO05D002896 7.9e-06 56.2 233 28.3


User provided reference genes

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