Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 3.0e-122 441.8 213 100.0
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 6.8e-111 404.1 213 89.7
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 1.5e-110 402.9 213 91.1
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 2.6e-110 402.1 213 89.7
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 1.3e-109 399.8 213 90.1
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 3.2e-108 395.2 212 87.7
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.2e-107 393.3 212 88.2
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.6e-107 392.9 206 89.8
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 1.6e-107 392.9 212 87.7
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 2.7e-107 392.1 212 87.7
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 6.0e-107 391.0 212 87.3
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 7.8e-107 390.6 212 86.8
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 1.3e-106 389.8 212 87.3
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.3e-106 389.8 212 86.8
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 5.1e-106 387.9 212 85.8
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 6.6e-106 387.5 212 86.3
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 8.7e-106 387.1 212 85.4
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 3.3e-105 385.2 212 84.9
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 1.6e-104 382.9 212 85.4
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 2.1e-104 382.5 212 84.4
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 2.8e-104 382.1 212 84.9
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 6.2e-104 380.9 212 84.4
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 1.1e-103 380.2 211 83.9
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.4e-103 379.8 211 84.4
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 1.8e-103 379.4 212 83.5
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 1.8e-103 379.4 212 83.0
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 2.4e-103 379.0 212 82.5
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 3.1e-103 378.6 212 82.5
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 6.9e-103 377.5 212 83.5
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 9.0e-103 377.1 212 85.4
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 1.5e-102 376.3 211 84.4
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 2.0e-102 375.9 211 82.5
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 3.4e-102 375.2 212 83.5
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 5.8e-102 374.4 211 82.9
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 5.8e-102 374.4 212 83.5
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 9.9e-102 373.6 211 82.5
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 1.3e-101 373.2 211 80.6
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 1.7e-101 372.9 212 83.0
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 2.2e-101 372.5 211 83.4
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 2.9e-101 372.1 211 81.5
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 2.9e-101 372.1 212 81.6
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 4.9e-101 371.3 212 82.5
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 4.9e-101 371.3 212 82.5
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 6.4e-101 370.9 211 82.0
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 8.4e-101 370.5 237 75.5
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 1.4e-100 369.8 210 82.4
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 3.2e-100 368.6 212 83.0
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 1.2e-99 366.7 212 83.5
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 1.2e-99 366.7 212 81.1
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 2.7e-99 365.5 212 81.6
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 3.5e-99 365.2 212 82.5
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 4.6e-99 364.8 212 83.0
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 4.6e-99 364.8 212 80.7
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 7.9e-99 364.0 212 82.1
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 1.3e-98 363.2 212 82.1
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 1.7e-98 362.8 211 80.6
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 1.7e-98 362.8 212 82.5
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 1.7e-98 362.8 212 82.1
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 1.7e-98 362.8 212 82.1
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 3.0e-98 362.1 212 81.1
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 3.0e-98 362.1 212 82.1
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 5.1e-98 361.3 212 79.2
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 1.5e-97 359.8 212 81.1
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 1.5e-97 359.8 212 81.1
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 1.9e-97 359.4 212 82.5
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 2.5e-97 359.0 210 81.0
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 2.5e-97 359.0 212 78.3
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 3.3e-97 358.6 212 80.7
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 3.3e-97 358.6 212 79.2
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 1.3e-96 356.7 212 80.2
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 1.3e-96 356.7 212 80.7
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 1.6e-96 356.3 212 81.1
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 1.6e-96 356.3 212 77.8
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 2.1e-96 355.9 212 79.2
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 2.1e-96 355.9 212 78.3
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 1.4e-95 353.2 212 81.6
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 2.4e-95 352.4 241 73.4
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 2.4e-95 352.4 264 67.8
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 3.1e-95 352.1 211 76.3
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 4.0e-95 351.7 211 75.8
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 6.9e-95 350.9 211 78.2
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 1.2e-94 350.1 212 76.9
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 2.0e-94 349.4 191 84.8
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 4.5e-94 348.2 212 79.7
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 7.6e-94 347.4 212 75.9
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 9.9e-94 347.1 212 76.4
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 9.9e-94 347.1 212 75.5
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 3.8e-93 345.1 202 80.2
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.1e-92 343.6 202 80.7
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 2.4e-92 342.4 211 77.7
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 3.2e-92 342.0 236 71.6
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 7.1e-92 340.9 211 74.4
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 9.3e-92 340.5 201 81.1
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 6.0e-91 337.8 216 76.9
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 1.3e-90 336.7 318 56.6
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 2.3e-90 335.9 211 73.9
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 2.5e-89 332.4 200 80.0
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 8.1e-88 327.4 211 73.9
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 2.1e-83 312.8 191 75.4
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 2.8e-80 302.4 176 80.7
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 3.1e-79 298.9 213 71.4
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 3.1e-79 298.9 213 71.4
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 9.0e-79 297.4 211 64.9
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 5.0e-77 291.6 212 66.5
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 5.5e-76 288.1 201 69.7
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 1.5e-73 280.0 171 76.6
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 4.3e-73 278.5 221 64.7
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 4.3e-65 251.9 213 63.8
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 1.1e-57 227.3 208 54.3
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 1.3e-56 223.8 233 47.6
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 2.0e-46 189.9 226 44.7
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 4.7e-43 178.7 204 51.5
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 2.8e-40 169.5 97 81.4
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 4.1e-39 165.6 128 68.0
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 1.0e-37 161.0 163 55.2
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 3.8e-37 159.1 97 77.3
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 4.9e-32 142.1 81 77.8
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 5.0e-29 132.1 66 84.8
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 7.0e-23 111.7 61 90.2
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 1.2e-22 110.9 87 64.4
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 2.1e-19 100.1 60 83.3
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 2.4e-15 86.7 56 73.2
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 1.3e-13 80.9 57 71.9
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 8.3e-08 61.6 33 75.8
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 1.1e-07 61.2 39 74.4
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.4e-07 60.8 39 76.9


User provided reference genes

Program Settings