Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 5.3e-139 497.7 249 100.0
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.2e-109 400.2 251 82.9
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 5.6e-104 381.3 249 78.7
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 6.1e-103 377.9 249 73.9
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.0e-102 377.1 250 76.0
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 1.0e-102 377.1 251 76.1
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 2.1e-95 352.8 253 71.9
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 6.2e-95 351.3 280 67.5
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.3e-92 343.6 242 70.7
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.2e-90 337.0 247 69.2
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 3.5e-90 335.5 243 67.9
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 3.9e-89 332.0 233 70.8
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 7.3e-88 327.8 242 67.8
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 3.6e-87 325.5 244 67.6
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 4.9e-84 315.1 239 65.7
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 8.3e-84 314.3 206 74.3
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.4e-83 312.8 226 70.4
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 9.2e-83 310.8 200 76.5
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.7e-81 306.6 249 64.3
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 3.0e-81 305.8 242 64.9
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 3.0e-81 305.8 239 64.9
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 6.6e-81 304.7 242 64.5
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 3.6e-79 298.9 243 63.8
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 3.6e-79 298.9 249 65.1
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 3.1e-78 295.8 249 63.1
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 3.1e-78 295.8 249 63.1
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 5.2e-78 295.0 249 63.1
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.2e-77 293.9 221 65.2
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 1.5e-77 293.5 238 64.7
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 2.0e-77 293.1 237 63.7
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.6e-77 292.7 247 62.3
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 7.6e-77 291.2 228 64.5
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 9.9e-77 290.8 247 63.2
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.7e-76 290.0 247 61.1
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 2.2e-76 289.7 239 61.9
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 2.2e-76 289.7 239 61.9
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 6.4e-76 288.1 240 63.3
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.4e-75 287.0 242 61.2
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 3.2e-75 285.8 239 64.0
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 3.2e-75 285.8 240 62.9
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 4.1e-75 285.4 240 62.5
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 5.4e-75 285.0 240 59.2
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 7.1e-75 284.6 228 62.7
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 9.2e-75 284.3 245 60.8
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 9.2e-75 284.3 205 69.8
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.6e-74 283.5 242 58.7
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 3.5e-74 282.3 242 60.7
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 4.6e-74 282.0 239 61.5
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 6.0e-74 281.6 244 59.8
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.0e-73 280.8 237 60.8
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 3.0e-73 279.3 246 62.2
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 3.0e-73 279.3 243 60.1
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 5.1e-73 278.5 178 77.0
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 8.7e-73 277.7 247 59.5
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.5e-72 276.9 238 60.9
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 2.5e-72 276.2 238 58.0
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 3.3e-72 275.8 238 61.8
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 5.6e-72 275.0 241 59.8
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 9.6e-72 274.2 245 59.2
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 9.6e-72 274.2 239 59.4
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.6e-71 273.5 186 69.9
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 2.1e-71 273.1 248 57.7
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 2.1e-71 273.1 209 65.1
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 2.8e-71 272.7 238 60.1
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.6e-71 272.3 208 63.9
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 3.6e-71 272.3 247 58.7
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 3.6e-71 272.3 208 63.9
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 4.7e-71 271.9 178 73.6
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 1.8e-70 270.0 242 59.5
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 1.8e-70 270.0 205 67.8
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 2.4e-70 269.6 246 58.9
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 2.4e-70 269.6 208 63.0
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 4.0e-70 268.9 245 58.8
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 5.2e-70 268.5 188 70.7
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 5.2e-70 268.5 188 70.7
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 5.2e-70 268.5 239 59.0
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 5.2e-70 268.5 247 57.9
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 9.0e-70 267.7 245 57.6
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 1.5e-69 266.9 190 68.9
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 3.4e-69 265.8 220 63.2
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 4.4e-69 265.4 238 59.2
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 4.4e-69 265.4 238 59.2
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 5.8e-69 265.0 208 64.9
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 7.6e-69 264.6 210 64.3
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.7e-68 263.5 229 59.8
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 2.2e-68 263.1 239 56.9
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 1.4e-67 260.4 186 68.8
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 1.9e-67 260.0 188 68.6
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 4.2e-67 258.8 200 66.0
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 5.4e-67 258.5 241 54.8
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 5.4e-67 258.5 214 62.1
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 5.4e-67 258.5 181 70.2
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 2.1e-66 256.5 239 58.2
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 2.7e-66 256.1 240 60.0
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 6.0e-66 255.0 184 69.0
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 7.8e-66 254.6 178 68.5
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.3e-65 253.8 241 56.4
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.3e-63 247.3 211 61.1
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.6e-63 246.9 236 56.4
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 3.1e-62 242.7 224 57.1
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 9.0e-62 241.1 144 82.6
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 4.5e-61 238.8 241 54.8
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 9.9e-61 237.7 177 67.2
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.2e-60 236.5 205 58.0
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.2e-60 236.5 237 54.0
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 2.9e-60 236.1 236 53.0
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 2.9e-60 236.1 149 75.2
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 8.4e-60 234.6 143 77.6
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 4.2e-59 232.3 143 76.2
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 4.2e-59 232.3 237 53.2
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 9.3e-59 231.1 140 80.0
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.6e-58 230.3 157 70.7
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 2.1e-58 229.9 190 58.9
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 7.9e-58 228.0 241 54.4
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.0e-57 227.6 183 63.4
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.0e-57 227.6 149 72.5
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.3e-57 227.3 143 75.5
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.3e-57 226.5 158 72.2
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 2.3e-57 226.5 204 56.9
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.3e-55 220.7 156 71.2
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 2.1e-55 219.9 124 83.9
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 2.8e-55 219.5 199 59.3
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 1.4e-54 217.2 199 60.3
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.2e-53 214.2 160 65.0
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 3.2e-51 206.1 148 65.5
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 3.9e-49 199.1 252 46.8
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 8.7e-49 198.0 249 48.2
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 9.6e-48 194.5 189 55.0
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.1e-47 193.4 142 69.7
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 8.2e-47 191.4 198 53.5
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 1.4e-46 190.7 197 57.4
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.8e-46 190.3 239 49.0
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.2e-45 187.6 190 49.5
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 1.5e-45 187.2 140 64.3
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.7e-44 183.7 147 58.5
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.4e-43 180.6 142 58.5
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 7.1e-43 178.3 142 59.2
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.0e-42 175.3 215 44.7
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 1.3e-41 174.1 169 56.2
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 9.0e-38 161.4 185 47.6
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 6.5e-36 155.2 174 53.4
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.4e-35 154.1 147 57.8
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 7.2e-35 151.8 164 56.1
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 2.9e-28 129.8 128 52.3
FAN08G1603 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.8e-23 113.2 92 63.0
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 3.7e-23 112.8 79 65.8
FAN04G3248 Fragaria x ananassa HOM05D004693 ORTHO05D005545 1.4e-19 100.9 86 60.5
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.5e-16 90.9 141 36.2
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 4.4e-16 89.4 132 34.8
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 7.4e-16 88.6 148 34.5
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.4e-16 88.6 87 50.6
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.9e-12 76.6 140 33.6
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 1.5e-11 74.3 83 51.8
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 3.2e-11 73.2 154 29.2
QL02p051406 Quercus lobata HOM05D004693 ORTHO05D005545 3.6e-10 69.7 91 42.9
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-09 67.8 84 48.8
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 2.0e-08 63.9 126 27.0
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 7.5e-08 62.0 156 30.1
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.1e-06 58.2 120 27.5
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 2.4e-06 57.0 59 52.5


User provided reference genes

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