Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 7.5e-52 206.8 100 100.0
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 2.0e-44 182.2 100 89.0
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 1.3e-43 179.5 100 89.0
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 1.7e-43 179.1 98 87.8
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 4.9e-43 177.6 100 88.0
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.9e-43 177.6 100 88.0
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.9e-43 177.6 100 88.0
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 7.8e-41 170.2 100 82.0
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 2.3e-40 168.7 98 81.6
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 3.0e-40 168.3 100 85.0
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 3.9e-40 167.9 99 81.8
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 5.1e-40 167.5 100 83.0
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 6.6e-40 167.2 100 84.0
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 1.1e-39 166.4 99 81.8
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 1.1e-39 166.4 99 81.8
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 1.1e-39 166.4 99 81.8
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.5e-39 166.0 99 80.8
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 1.5e-39 166.0 99 81.8
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 1.5e-39 166.0 100 81.0
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 1.5e-39 166.0 99 78.8
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.9e-39 165.6 99 80.8
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 1.9e-39 165.6 100 80.0
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 2.5e-39 165.2 99 78.8
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 2.5e-39 165.2 93 84.9
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 3.3e-39 164.9 99 78.8
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 3.3e-39 164.9 93 84.9
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 3.3e-39 164.9 99 78.8
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 3.3e-39 164.9 99 78.8
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 4.3e-39 164.5 99 78.8
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 4.3e-39 164.5 94 84.0
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 5.6e-39 164.1 100 80.0
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 7.3e-39 163.7 100 81.0
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 9.5e-39 163.3 100 79.0
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 9.5e-39 163.3 100 79.0
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 9.5e-39 163.3 98 78.6
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 9.5e-39 163.3 99 80.8
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 9.5e-39 163.3 98 79.6
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 9.5e-39 163.3 104 79.8
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 9.5e-39 163.3 99 78.8
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 1.2e-38 162.9 94 84.0
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 1.2e-38 162.9 94 84.0
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 2.8e-38 161.8 92 83.7
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 3.6e-38 161.4 100 76.0
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 3.6e-38 161.4 100 80.0
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 4.7e-38 161.0 93 80.6
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.7e-38 161.0 98 78.6
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 6.2e-38 160.6 100 79.0
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 6.2e-38 160.6 100 76.0
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 6.2e-38 160.6 97 79.4
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 8.1e-38 160.2 98 77.6
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 8.1e-38 160.2 100 76.0
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 8.1e-38 160.2 98 76.5
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 8.1e-38 160.2 93 80.6
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 1.1e-37 159.8 100 77.0
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 1.1e-37 159.8 99 76.8
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 1.1e-37 159.8 99 76.8
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.1e-37 159.8 99 77.8
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 1.1e-37 159.8 93 79.6
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 1.1e-37 159.8 99 77.8
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 1.4e-37 159.5 93 79.6
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 1.4e-37 159.5 93 82.8
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 1.8e-37 159.1 99 76.8
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 1.8e-37 159.1 100 74.0
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 2.4e-37 158.7 100 74.0
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 2.4e-37 158.7 93 80.6
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 2.4e-37 158.7 99 80.8
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 2.4e-37 158.7 93 80.6
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 3.1e-37 158.3 95 80.0
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 4.0e-37 157.9 90 83.3
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 5.2e-37 157.5 100 74.0
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 5.2e-37 157.5 100 74.0
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 5.2e-37 157.5 96 76.0
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 6.8e-37 157.1 94 80.9
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 6.8e-37 157.1 94 80.9
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 1.2e-36 156.4 97 76.3
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 2.0e-36 155.6 94 79.8
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 3.4e-36 154.8 92 78.3
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 5.8e-36 154.1 97 79.4
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 7.6e-36 153.7 95 76.8
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 1.7e-35 152.5 100 71.0
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.7e-35 152.5 98 74.5
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 2.9e-35 151.8 98 73.5
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 3.8e-35 151.4 98 74.5
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 3.8e-35 151.4 95 75.8
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 3.8e-35 151.4 98 71.4
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 4.9e-35 151.0 119 66.4
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 6.4e-35 150.6 100 71.0
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 6.4e-35 150.6 100 71.0
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 6.4e-35 150.6 100 70.0
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 1.1e-34 149.8 100 71.0
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 1.1e-34 149.8 100 71.0
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.1e-34 149.8 100 71.0
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.9e-34 149.1 96 71.9
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 1.9e-34 149.1 100 71.0
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 4.2e-34 147.9 100 70.0
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 4.2e-34 147.9 100 70.0
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 4.2e-34 147.9 98 71.4
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 5.4e-34 147.5 89 78.7
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 5.4e-34 147.5 89 78.7
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 7.1e-34 147.1 100 70.0
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 9.2e-34 146.7 94 75.5
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 1.6e-33 146.0 100 69.0
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 2.1e-33 145.6 100 69.0
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 2.7e-33 145.2 100 69.0
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.3e-32 142.9 97 68.0
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 5.6e-31 137.5 82 82.9
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 1.6e-30 136.0 93 67.7
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 2.6e-28 128.6 74 82.4
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 2.2e-27 125.6 88 68.2
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 2.2e-27 125.6 99 61.6
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 2.9e-27 125.2 90 60.0
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 2.4e-26 122.1 173 43.9
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 6.6e-24 114.0 69 84.1
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 2.1e-22 109.0 87 59.8
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 2.0e-20 102.4 98 56.1
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 3.4e-20 101.7 99 57.6
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 8.4e-19 97.1 60 80.0
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 1.9e-18 95.9 89 49.4
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 5.4e-18 94.4 62 69.4
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 2.1e-17 92.4 70 60.0
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 8.7e-16 87.0 98 51.0
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 7.4e-15 84.0 99 47.5
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 7.6e-12 73.9 42 88.1
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 8.4e-11 70.5 98 37.8
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 2.5e-07 58.9 40 72.5
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 7.4e-07 57.4 83 31.3
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 7.4e-07 57.4 36 80.6
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.3e-06 56.6 35 74.3


User provided reference genes

Program Settings