Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G051900 Prunus persica HOM05D000071 ORTHO05D000029 5.1e-65 251.5 192 100.0
RcHm_v2.0_Chr7g0207581 Rosa chinensis HOM05D000071 ORTHO05D000029 2.3e-25 119.8 235 38.7
FvH4_6g28530 Fragaria vesca HOM05D000071 ORTHO05D000029 6.8e-25 118.2 95 69.5
FAN05G1261 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.2e-24 117.5 95 68.4
FAN14G0510 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.2e-24 117.5 95 69.5
FAN02G3130 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.5e-24 117.1 95 68.4
Prupe.2G304800 Prunus persica HOM05D000071 ORTHO05D000029 2.6e-24 116.3 96 68.8
MD01G1212500 Malus domestica HOM05D000071 ORTHO05D000029 9.8e-24 114.4 95 66.3
RcHm_v2.0_Chr3g0472711 Rosa chinensis HOM05D000071 ORTHO05D000029 1.3e-23 114.0 203 55.2
RcHm_v2.0_Chr7g0205911 Rosa chinensis HOM05D000071 ORTHO05D000029 1.3e-23 114.0 223 41.3
RcHm_v2.0_Chr2g0132821 Rosa chinensis HOM05D000071 ORTHO05D000029 1.7e-23 113.6 95 67.4
RcHm_v2.0_Chr7g0208821 Rosa chinensis HOM05D000071 ORTHO05D000029 3.7e-23 112.5 252 34.9
RcHm_v2.0_Chr7g0207621 Rosa chinensis HOM05D000071 ORTHO05D000029 4.8e-23 112.1 96 66.7
RcHm_v2.0_Chr7g0207001 Rosa chinensis HOM05D000071 ORTHO05D000029 3.1e-22 109.4 226 38.1
RcHm_v2.0_Chr7g0207311 Rosa chinensis HOM05D000071 ORTHO05D000029 4.1e-22 109.0 94 66.0
MD01G1212300 Malus domestica HOM05D000071 ORTHO05D000029 7.0e-22 108.2 95 63.2
RcHm_v2.0_Chr7g0206581 Rosa chinensis HOM05D000071 ORTHO05D000029 1.2e-21 107.5 226 39.8
RcHm_v2.0_Chr7g0206851 Rosa chinensis HOM05D000071 ORTHO05D000029 1.6e-21 107.1 186 41.9
MD01G1212600 Malus domestica HOM05D000071 ORTHO05D000029 2.7e-21 106.3 95 63.2
RcHm_v2.0_Chr7g0206621 Rosa chinensis HOM05D000071 ORTHO05D000029 2.7e-21 106.3 226 37.6
RcHm_v2.0_Chr7g0207161 Rosa chinensis HOM05D000071 ORTHO05D000029 4.5e-21 105.5 186 41.4
RcHm_v2.0_Chr7g0207661 Rosa chinensis HOM05D000071 ORTHO05D000029 4.5e-21 105.5 95 62.1
RcHm_v2.0_Chr7g0206401 Rosa chinensis HOM05D000071 ORTHO05D000029 7.7e-21 104.8 96 62.5
RcHm_v2.0_Chr7g0207631 Rosa chinensis HOM05D000071 ORTHO05D000029 7.7e-21 104.8 96 62.5
RcHm_v2.0_Chr0c22g0500441 Rosa chinensis HOM05D000071 ORTHO05D000029 1.0e-20 104.4 96 62.5
RcHm_v2.0_Chr7g0207711 Rosa chinensis HOM05D000071 ORTHO05D000029 1.0e-20 104.4 226 37.6
RcHm_v2.0_Chr7g0206921 Rosa chinensis HOM05D000071 ORTHO05D000029 1.3e-20 104.0 93 63.4
RcHm_v2.0_Chr7g0207201 Rosa chinensis HOM05D000071 ORTHO05D000029 1.3e-20 104.0 93 63.4
RcHm_v2.0_Chr7g0207481 Rosa chinensis HOM05D000071 ORTHO05D000029 1.7e-20 103.6 223 37.2
RcHm_v2.0_Chr7g0207601 Rosa chinensis HOM05D000071 ORTHO05D000029 2.9e-20 102.8 226 36.3
RcHm_v2.0_Chr7g0207801 Rosa chinensis HOM05D000071 ORTHO05D000029 2.9e-20 102.8 96 60.4
RcHm_v2.0_Chr1g0379671 Rosa chinensis HOM05D000071 ORTHO05D000029 5.0e-20 102.1 96 59.4
RcHm_v2.0_Chr2g0096591 Rosa chinensis HOM05D000071 ORTHO05D000029 8.6e-20 101.3 92 63.0
FAN04G2267 Fragaria x ananassa HOM05D000071 ORTHO05D000029 3.3e-19 99.4 93 60.2
FAN08G3589 Fragaria x ananassa HOM05D000071 ORTHO05D000029 3.3e-19 99.4 93 60.2
RcHm_v2.0_Chr7g0215981 Rosa chinensis HOM05D000071 ORTHO05D000029 3.3e-19 99.4 243 47.3
RcHm_v2.0_Chr7g0216021 Rosa chinensis HOM05D000071 ORTHO05D000029 5.5e-19 98.6 250 50.0
RcHm_v2.0_Chr7g0206761 Rosa chinensis HOM05D000071 ORTHO05D000029 1.6e-18 97.1 250 34.0
RcHm_v2.0_Chr1g0379681 Rosa chinensis HOM05D000071 ORTHO05D000029 3.6e-18 95.9 96 55.2
RcHm_v2.0_Chr7g0207421 Rosa chinensis HOM05D000071 ORTHO05D000029 6.1e-18 95.1 226 35.8
RcHm_v2.0_Chr0c22g0500681 Rosa chinensis HOM05D000071 ORTHO05D000029 1.0e-17 94.4 94 58.5
RcHm_v2.0_Chr4g0400791 Rosa chinensis HOM05D000071 ORTHO05D000029 1.2e-16 90.9 96 56.2
CANSAT21G1502 Cannabis sativa HOM05D000071 ORTHO05D000029 1.5e-16 90.5 93 54.8
CANSAT21G1199 Cannabis sativa HOM05D000071 ORTHO05D000029 7.5e-16 88.2 93 53.8
RcHm_v2.0_Chr7g0207571 Rosa chinensis HOM05D000071 ORTHO05D000029 1.7e-12 77.0 80 60.0
Prupe.2G155500 Prunus persica HOM05D000071 ORTHO05D000029 8.6e-12 74.7 185 45.4
Oeu005944.1 Olea europaea HOM05D000071 ORTHO05D000029 3.3e-11 72.8 198 52.0
CANSAT56G3135 Cannabis sativa HOM05D000071 ORTHO05D000029 1.2e-10 70.9 91 42.9
Oeu027688.1 Olea europaea HOM05D000071 ORTHO05D000029 1.6e-10 70.5 198 52.5
Dinv24273 Davidia involucrata HOM05D000071 ORTHO05D000029 2.8e-10 69.7 182 50.5
Gohir.D05G357744 Gossypium hirsutum HOM05D000071 ORTHO05D000029 3.6e-10 69.3 91 45.1
Prupe.2G166100 Prunus persica HOM05D000071 ORTHO05D000029 4.7e-10 68.9 92 44.6
Gohir.D05G357328 Gossypium hirsutum HOM05D000071 ORTHO05D000029 8.0e-10 68.2 91 44.0
Gohir.D05G357650 Gossypium hirsutum HOM05D000071 ORTHO05D000029 8.0e-10 68.2 91 44.0
Gorai.009G390200 Gossypium raimondii HOM05D000071 ORTHO05D000029 8.0e-10 68.2 91 45.1
Gohir.D05G357356 Gossypium hirsutum HOM05D000071 ORTHO05D000029 1.0e-09 67.8 204 29.4
Gohir.D05G357700 Gossypium hirsutum HOM05D000071 ORTHO05D000029 1.8e-09 67.0 91 42.9
Rhsim05G0177600 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.8e-09 67.0 92 44.6
GSVIVG01028786001 Vitis vinifera HOM05D000071 ORTHO05D000029 1.8e-09 67.0 92 46.7
vmacro20009 Vaccinium macrocarpon HOM05D000071 ORTHO05D000029 3.1e-09 66.2 84 48.8
Atru.chr10.974 Acer truncatum HOM05D000071 ORTHO05D000029 4.0e-09 65.9 93 44.1
Prupe.2G155900 Prunus persica HOM05D000071 ORTHO05D000029 4.0e-09 65.9 89 44.9
Ciclev10007014m.g Citrus clementina HOM05D000071 ORTHO05D000029 5.2e-09 65.5 92 50.0
Gohir.A04G029604 Gossypium hirsutum HOM05D000071 ORTHO05D000029 5.2e-09 65.5 91 42.9
Oeu021999.2 Olea europaea HOM05D000071 ORTHO05D000029 5.2e-09 65.5 190 31.6
Gohir.D05G357580 Gossypium hirsutum HOM05D000071 ORTHO05D000029 6.8e-09 65.1 91 45.1
FvH4_5g20780 Fragaria vesca HOM05D000071 ORTHO05D000029 8.9e-09 64.7 188 29.8
FAN18G4569 Fragaria x ananassa HOM05D000071 ORTHO05D000029 8.9e-09 64.7 188 29.8
Gohir.D05G357468 Gossypium hirsutum HOM05D000071 ORTHO05D000029 8.9e-09 64.7 97 41.2
Lj3g0020164 Lotus japonicus HOM05D000071 ORTHO05D000029 1.2e-08 64.3 93 43.0
MD01G1057400 Malus domestica HOM05D000071 ORTHO05D000029 1.2e-08 64.3 92 42.4
Thecc.07G083500 Theobroma cacao HOM05D000071 ORTHO05D000029 1.2e-08 64.3 91 44.0
GSVIVG01028766001 Vitis vinifera HOM05D000071 ORTHO05D000029 1.5e-08 63.9 93 44.1
AUR62021098 Chenopodium quinoa HOM05D000071 ORTHO05D000029 2.0e-08 63.5 94 44.7
FAN06G0057 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.0e-08 63.5 92 43.5
Medtr6g038700 Medicago truncatula HOM05D000071 ORTHO05D000029 2.0e-08 63.5 96 40.6
QL05p086746 Quercus lobata HOM05D000071 ORTHO05D000029 2.0e-08 63.5 97 41.2
RcHm_v2.0_Chr7g0208841 Rosa chinensis HOM05D000071 ORTHO05D000029 2.0e-08 63.5 41 70.7
AUR62021099 Chenopodium quinoa HOM05D000071 ORTHO05D000029 2.6e-08 63.2 94 44.7
Duzib133G0379 Durio zibethinus HOM05D000071 ORTHO05D000029 3.4e-08 62.8 93 44.1
FAN03G3013 Fragaria x ananassa HOM05D000071 ORTHO05D000029 3.4e-08 62.8 221 27.6
Gohir.D05G357733 Gossypium hirsutum HOM05D000071 ORTHO05D000029 3.4e-08 62.8 91 41.8
Dinv24274 Davidia involucrata HOM05D000071 ORTHO05D000029 4.4e-08 62.4 87 44.8
FvH4_7g14450 Fragaria vesca HOM05D000071 ORTHO05D000029 4.4e-08 62.4 92 42.4
FAN06G1677 Fragaria x ananassa HOM05D000071 ORTHO05D000029 4.4e-08 62.4 92 42.4
QL09p011863 Quercus lobata HOM05D000071 ORTHO05D000029 4.4e-08 62.4 84 47.6
QL09p011872 Quercus lobata HOM05D000071 ORTHO05D000029 4.4e-08 62.4 84 47.6
FAN01G1144 Fragaria x ananassa HOM05D000071 ORTHO05D000029 5.8e-08 62.0 95 43.2
Thecc.03G189000 Theobroma cacao HOM05D000071 ORTHO05D000029 5.8e-08 62.0 91 41.8
Thecc.07G083300 Theobroma cacao HOM05D000071 ORTHO05D000029 5.8e-08 62.0 211 36.5
Ciclev10006412m.g Citrus clementina HOM05D000071 ORTHO05D000029 7.5e-08 61.6 90 46.7
Gohir.D05G357711 Gossypium hirsutum HOM05D000071 ORTHO05D000029 9.8e-08 61.2 91 41.8
Medtr6g037750 Medicago truncatula HOM05D000071 ORTHO05D000029 9.8e-08 61.2 83 41.0
Phvul.004G100200 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 9.8e-08 61.2 69 46.4
FAN10G1909 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.3e-07 60.8 93 43.0
RcHm_v2.0_Chr1g0354971 Rosa chinensis HOM05D000071 ORTHO05D000029 1.3e-07 60.8 92 43.5
Ciclev10006453m.g Citrus clementina HOM05D000071 ORTHO05D000029 1.7e-07 60.5 92 38.0
Dinv24270 Davidia involucrata HOM05D000071 ORTHO05D000029 1.7e-07 60.5 87 43.7
Thecc.07G083100 Theobroma cacao HOM05D000071 ORTHO05D000029 1.7e-07 60.5 91 40.7
MSTRG.6560 Avicennia marina HOM05D000071 ORTHO05D000029 2.2e-07 60.1 86 48.8
Gohir.D05G357722 Gossypium hirsutum HOM05D000071 ORTHO05D000029 2.2e-07 60.1 204 36.8
Lj1g0017370 Lotus japonicus HOM05D000071 ORTHO05D000029 2.9e-07 59.7 93 40.9
Phvul.004G104900 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 2.9e-07 59.7 91 41.8
QL05p086426 Quercus lobata HOM05D000071 ORTHO05D000029 2.9e-07 59.7 94 41.5
Peaxi162Scf00023g00085 Petunia axillaris HOM05D000071 ORTHO05D000029 3.7e-07 59.3 90 38.9
QL05p087191 Quercus lobata HOM05D000071 ORTHO05D000029 3.7e-07 59.3 97 40.2
RcHm_v2.0_Chr5g0069511 Rosa chinensis HOM05D000071 ORTHO05D000029 3.7e-07 59.3 224 29.0
Cfa002579 Carpinus fangiana HOM05D000071 ORTHO05D000029 4.9e-07 58.9 101 42.6
Oeu033733.1 Olea europaea HOM05D000071 ORTHO05D000029 4.9e-07 58.9 95 38.9
Phvul.004G105400 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 4.9e-07 58.9 79 44.3
RcHm_v2.0_Chr1g0354881 Rosa chinensis HOM05D000071 ORTHO05D000029 4.9e-07 58.9 94 42.6
TPR.G16197 Trifolium pratense HOM05D000071 ORTHO05D000029 4.9e-07 58.9 91 39.6
Oeu060485.1 Olea europaea HOM05D000071 ORTHO05D000029 6.4e-07 58.5 89 42.7
Phvul.004G104700 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 6.4e-07 58.5 91 40.7
Phvul.004G103000 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 8.3e-07 58.2 85 43.5
QL08p008451 Quercus lobata HOM05D000071 ORTHO05D000029 8.3e-07 58.2 91 47.3
RcHm_v2.0_Chr1g0355001 Rosa chinensis HOM05D000071 ORTHO05D000029 8.3e-07 58.2 93 43.0
Thecc.07G083000 Theobroma cacao HOM05D000071 ORTHO05D000029 8.3e-07 58.2 91 40.7
Gohir.D05G357384 Gossypium hirsutum HOM05D000071 ORTHO05D000029 1.1e-06 57.8 204 27.5
Lj2g0025647 Lotus japonicus HOM05D000071 ORTHO05D000029 1.1e-06 57.8 95 40.0
CiPaw.05G208900 Carya illinoinensis HOM05D000071 ORTHO05D000029 1.4e-06 57.4 95 42.1
CiPaw.05G209300 Carya illinoinensis HOM05D000071 ORTHO05D000029 1.4e-06 57.4 95 42.1
Haze_24812 Corylus avellana HOM05D000071 ORTHO05D000029 1.4e-06 57.4 100 39.0
Potri.015G024600 Populus trichocarpa HOM05D000071 ORTHO05D000029 1.4e-06 57.4 91 40.7
Potri.015G025200 Populus trichocarpa HOM05D000071 ORTHO05D000029 1.4e-06 57.4 91 40.7
Rhsim05G0176700 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.4e-06 57.4 95 42.1
SalBow7G0903 Salvia bowleyana HOM05D000071 ORTHO05D000029 1.4e-06 57.4 86 46.5
Rhsim05G0176800 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.9e-06 57.0 95 42.1
SalBow7G3001 Salvia bowleyana HOM05D000071 ORTHO05D000029 1.9e-06 57.0 86 43.0
Haze_00084 Corylus avellana HOM05D000071 ORTHO05D000029 2.4e-06 56.6 100 41.0
FAN10G3717 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.4e-06 56.6 93 41.9
Glyma.16G170700 Glycine max HOM05D000071 ORTHO05D000029 2.4e-06 56.6 76 44.7
Hma1.2p1_0142F.1_g064240 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 2.4e-06 56.6 93 39.8
Potri.015G025100 Populus trichocarpa HOM05D000071 ORTHO05D000029 2.4e-06 56.6 92 38.0
Potri.015G025800 Populus trichocarpa HOM05D000071 ORTHO05D000029 2.4e-06 56.6 91 40.7
QL10p032951 Quercus lobata HOM05D000071 ORTHO05D000029 2.4e-06 56.6 97 41.2
TPR.G27692 Trifolium pratense HOM05D000071 ORTHO05D000029 2.4e-06 56.6 83 42.2
Ciclev10027645m.g Citrus clementina HOM05D000071 ORTHO05D000029 3.2e-06 56.2 91 45.1
Phvul.004G105600 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 3.2e-06 56.2 85 40.0
QL09p011963 Quercus lobata HOM05D000071 ORTHO05D000029 3.2e-06 56.2 91 38.5
TPR.G22019 Trifolium pratense HOM05D000071 ORTHO05D000029 3.2e-06 56.2 82 42.7
Manes.06G154900 Manihot esculenta HOM05D000071 ORTHO05D000029 4.1e-06 55.8 84 39.3
Medtr6g038910 Medicago truncatula HOM05D000071 ORTHO05D000029 4.1e-06 55.8 83 39.8
QL09p011978 Quercus lobata HOM05D000071 ORTHO05D000029 4.1e-06 55.8 201 27.4
Glyma.07G219802 Glycine max HOM05D000071 ORTHO05D000029 5.4e-06 55.5 93 38.7
Glyma.16G171100 Glycine max HOM05D000071 ORTHO05D000029 5.4e-06 55.5 69 44.9
Phvul.004G105100 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 5.4e-06 55.5 87 43.7
Rhsim02G0045900 Rhododendron simsii HOM05D000071 ORTHO05D000029 5.4e-06 55.5 92 38.0
RcHm_v2.0_Chr1g0354761 Rosa chinensis HOM05D000071 ORTHO05D000029 5.4e-06 55.5 88 43.2
SalBow7G0233 Salvia bowleyana HOM05D000071 ORTHO05D000029 5.4e-06 55.5 84 42.9
Dinv24278 Davidia involucrata HOM05D000071 ORTHO05D000029 7.0e-06 55.1 203 30.5
Glyma.16G125200 Glycine max HOM05D000071 ORTHO05D000029 7.0e-06 55.1 71 45.1
Glyma.16G171500 Glycine max HOM05D000071 ORTHO05D000029 7.0e-06 55.1 76 43.4
Medtr0017s0230 Medicago truncatula HOM05D000071 ORTHO05D000029 7.0e-06 55.1 84 44.0
Medtr0061s0050 Medicago truncatula HOM05D000071 ORTHO05D000029 7.0e-06 55.1 84 44.0
Phvul.004G103700 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 7.0e-06 55.1 91 40.7
Sabra15G0019000 Salix brachista HOM05D000071 ORTHO05D000029 7.0e-06 55.1 91 40.7
Sabra15G0021500 Salix brachista HOM05D000071 ORTHO05D000029 7.0e-06 55.1 91 40.7
SalBow7G4068 Salvia bowleyana HOM05D000071 ORTHO05D000029 7.0e-06 55.1 84 42.9
Sc01g0001770 Simmondsia chinensis HOM05D000071 ORTHO05D000029 7.0e-06 55.1 90 41.1
Haze_06467 Corylus avellana HOM05D000071 ORTHO05D000029 9.2e-06 54.7 96 39.6
FAN10G0425 Fragaria x ananassa HOM05D000071 ORTHO05D000029 9.2e-06 54.7 91 42.9
Medtr6g038670 Medicago truncatula HOM05D000071 ORTHO05D000029 9.2e-06 54.7 86 38.4
Oeu059690.1 Olea europaea HOM05D000071 ORTHO05D000029 9.2e-06 54.7 89 43.8
Prupe.2G156100 Prunus persica HOM05D000071 ORTHO05D000029 9.2e-06 54.7 224 25.9
QL05p010037 Quercus lobata HOM05D000071 ORTHO05D000029 9.2e-06 54.7 90 45.6


User provided reference genes

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