Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G050900 Prunus persica HOM05D004897 ORTHO05D005928 3.2e-30 134.4 68 100.0
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 4.2e-14 80.9 49 89.8
FvH4_5g17221 Fragaria vesca HOM05D004897 ORTHO05D005928 2.7e-13 78.2 49 83.7
FAN04G2242 Fragaria x ananassa HOM05D004897 ORTHO05D005928 2.7e-13 78.2 49 83.7
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 2.7e-13 78.2 49 83.7
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 2.7e-13 78.2 49 83.7
FAN13G1819 Fragaria x ananassa HOM05D004897 ORTHO05D005928 4.7e-13 77.4 49 83.7
FAN08G3076 Fragaria x ananassa HOM05D004897 ORTHO05D005928 1.0e-12 76.3 49 81.6
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 4.0e-12 74.3 49 81.6
Ah.11g045250 Amaranthus hybridus HOM05D004897 ORTHO05D005928 8.8e-12 73.2 49 77.6
Haze_18817 Corylus avellana HOM05D004897 ORTHO05D005928 1.2e-11 72.8 49 77.6
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 2.0e-11 72.0 49 77.6
Cfa019677 Carpinus fangiana HOM05D004897 ORTHO05D005928 2.6e-11 71.6 49 75.5
Actinidia35124 Actinidia chinensis HOM05D004897 ORTHO05D005928 3.4e-11 71.2 49 75.5
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 3.4e-11 71.2 49 75.5
Dinv18253 Davidia involucrata HOM05D004897 ORTHO05D005928 4.4e-11 70.9 49 73.5
TAR622G0961 Trochodendron aralioides HOM05D004897 ORTHO05D005928 4.4e-11 70.9 43 81.4
CiPaw.15G140900 Carya illinoinensis HOM05D004897 ORTHO05D005928 5.7e-11 70.5 42 81.0
Hma1.2p1_0669F.1_g200180 Hydrangea macrophylla HOM05D004897 ORTHO05D005928 5.7e-11 70.5 49 73.5
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 7.5e-11 70.1 42 83.3
Glyma.05G244800 Glycine max HOM05D004897 ORTHO05D005928 7.5e-11 70.1 42 83.3
Lalb_Chr05g0221751 Lupinus albus HOM05D004897 ORTHO05D005928 7.5e-11 70.1 42 81.0
Ca_17200_v3 Cicer arietinum L. HOM05D004897 ORTHO05D005928 9.8e-11 69.7 42 81.0
Nn4g24194 Nelumbo nucifera HOM05D004897 ORTHO05D005928 1.3e-10 69.3 43 79.1
Aqoxy3G00106 Aquilegia oxysepala HOM05D004897 ORTHO05D005928 1.7e-10 68.9 43 79.1
QL10p028216 Quercus lobata HOM05D004897 ORTHO05D005928 1.7e-10 68.9 43 76.7
QL10p028331 Quercus lobata HOM05D004897 ORTHO05D005928 1.7e-10 68.9 43 76.7
Dinv10174 Davidia involucrata HOM05D004897 ORTHO05D005928 2.2e-10 68.6 49 73.5
GSVIVG01008418001 Vitis vinifera HOM05D004897 ORTHO05D005928 2.2e-10 68.6 43 76.7
Medtr8g107060 Medicago truncatula HOM05D004897 ORTHO05D005928 2.8e-10 68.2 42 78.6
PSO017G1741 Papaver somniferum HOM05D004897 ORTHO05D005928 2.8e-10 68.2 43 76.7
Sc10g0009320 Simmondsia chinensis HOM05D004897 ORTHO05D005928 2.8e-10 68.2 49 73.5
TPR.G1406 Trifolium pratense HOM05D004897 ORTHO05D005928 2.8e-10 68.2 42 78.6
Actinidia18901 Actinidia chinensis HOM05D004897 ORTHO05D005928 3.7e-10 67.8 49 69.4
VMungo0251G1788 Vigna mungo HOM05D004897 ORTHO05D005928 3.7e-10 67.8 42 81.0
PSO478G0546 Papaver somniferum HOM05D004897 ORTHO05D005928 4.8e-10 67.4 43 76.7
Sabra15G0057300 Salix brachista HOM05D004897 ORTHO05D005928 4.8e-10 67.4 57 63.2
CSS0030961 Camellia sinensis var. sinensis HOM05D004897 ORTHO05D005928 6.3e-10 67.0 43 76.7
ECA233G2541 Erigeron canadensis HOM05D004897 ORTHO05D005928 6.3e-10 67.0 42 76.2
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 8.3e-10 66.6 42 78.6
Psat7g002120 Pisum sativum HOM05D004897 ORTHO05D005928 8.3e-10 66.6 41 78.0
Potri.015G039800 Populus trichocarpa HOM05D004897 ORTHO05D005928 8.3e-10 66.6 57 63.2
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 1.1e-09 66.2 43 74.4
Nitab4.5_0001456g0120 Nicotiana tabacum HOM05D004897 ORTHO05D005928 1.1e-09 66.2 43 72.1
Peaxi162Scf00683g00441 Petunia axillaris HOM05D004897 ORTHO05D005928 1.1e-09 66.2 43 74.4
Lj9C421G3 Lonicera japonica HOM05D004897 ORTHO05D005928 2.4e-09 65.1 43 72.1
Phvul.002G329100 Phaseolus vulgaris HOM05D004897 ORTHO05D005928 2.4e-09 65.1 42 76.2
DCAR_014009 Daucus carota HOM05D004897 ORTHO05D005928 4.1e-09 64.3 43 72.1
PGR083G0946 Punica granatum HOM05D004897 ORTHO05D005928 4.1e-09 64.3 41 78.0
Nitab4.5_0006894g0040 Nicotiana tabacum HOM05D004897 ORTHO05D005928 5.4e-09 63.9 43 69.8
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 7.0e-09 63.5 42 78.6
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 7.0e-09 63.5 43 72.1
Cpa.g.sc3.408 Carica papaya HOM05D004897 ORTHO05D005928 9.1e-09 63.2 43 74.4
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 1.2e-08 62.8 42 76.2
TWI81G0456 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 1.2e-08 62.8 47 68.1
vmacro16414 Vaccinium macrocarpon HOM05D004897 ORTHO05D005928 1.2e-08 62.8 43 72.1
AUR62042935 Chenopodium quinoa HOM05D004897 ORTHO05D005928 1.6e-08 62.4 49 65.3
HanXRQChr08g0227441 Helianthus annuus HOM05D004897 ORTHO05D005928 1.6e-08 62.4 42 71.4
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 2.7e-08 61.6 49 67.3
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 2.7e-08 61.6 49 67.3
Cc04_g06380 Coffea canephora HOM05D004897 ORTHO05D005928 3.5e-08 61.2 43 72.1
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 4.5e-08 60.8 43 69.8
Rhsim12G0138900 Rhododendron simsii HOM05D004897 ORTHO05D005928 4.5e-08 60.8 43 67.4
TWI60G0918 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 4.5e-08 60.8 46 67.4
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 5.9e-08 60.5 49 65.3
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 5.9e-08 60.5 43 72.1
SGA_v2.0_scaffold168G38498 Striga asiatica HOM05D004897 ORTHO05D005928 5.9e-08 60.5 43 72.1
ATR1102G065 Amborella trichopoda HOM05D004897 ORTHO05D005928 7.7e-08 60.1 51 64.7
COL.COLO4_16135 Corchorus olitorius HOM05D004897 ORTHO05D005928 7.7e-08 60.1 59 61.0
Oeu041185.1 Olea europaea HOM05D004897 ORTHO05D005928 7.7e-08 60.1 53 67.9
Gohir.A09G175700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.0e-07 59.7 49 65.3
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 1.3e-07 59.3 49 63.3
SalBow1G4576 Salvia bowleyana HOM05D004897 ORTHO05D005928 1.3e-07 59.3 43 69.8
Duzib084G0246 Durio zibethinus HOM05D004897 ORTHO05D005928 1.7e-07 58.9 49 65.3
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 1.7e-07 58.9 42 66.7
Thecc.03G053700 Theobroma cacao HOM05D004897 ORTHO05D005928 2.3e-07 58.5 49 65.3
MSTRG.4571 Avicennia marina HOM05D004897 ORTHO05D005928 2.9e-07 58.2 43 67.4
THA.LOC104812165 Tarenaya hassleriana HOM05D004897 ORTHO05D005928 2.9e-07 58.2 43 67.4
Zm00001eb072950 Zea mays HOM05D004897 ORTHO05D005928 2.9e-07 58.2 43 62.8
HPP92_013368 Vanilla planifolia HOM05D004897 ORTHO05D005928 3.8e-07 57.8 43 67.4
Os04g0652500 Oryza sativa ssp. japonica HOM05D004897 ORTHO05D005928 5.0e-07 57.4 43 62.8
Zm00001eb168530 Zea mays HOM05D004897 ORTHO05D005928 5.0e-07 57.4 43 62.8
Zm00001eb243110 Zea mays HOM05D004897 ORTHO05D005928 5.0e-07 57.4 43 62.8
Zm00001eb381910 Zea mays HOM05D004897 ORTHO05D005928 5.0e-07 57.4 43 62.8
Zm00001eb382530 Zea mays HOM05D004897 ORTHO05D005928 5.0e-07 57.4 43 62.8
ClCG06G014390 Citrullus lanatus HOM05D004897 ORTHO05D005928 6.6e-07 57.0 43 65.1
Sed0018128 Sechium edule HOM05D004897 ORTHO05D005928 6.6e-07 57.0 43 65.1
BcaB07g31825 Brassica carinata HOM05D004897 ORTHO05D005928 8.6e-07 56.6 43 67.4
BcaC05g25714 Brassica carinata HOM05D004897 ORTHO05D005928 8.6e-07 56.6 43 67.4
A06p14220 Brassica napus HOM05D004897 ORTHO05D005928 8.6e-07 56.6 43 67.4
C05p16500 Brassica napus HOM05D004897 ORTHO05D005928 8.6e-07 56.6 43 67.4
BolC5t30347H Brassica oleracea HOM05D004897 ORTHO05D005928 8.6e-07 56.6 43 67.4
BraA06t24553Z Brassica rapa HOM05D004897 ORTHO05D005928 8.6e-07 56.6 43 67.4
Sp1g16170 Schrenkiella parvula HOM05D004897 ORTHO05D005928 8.6e-07 56.6 43 67.4
Sed0002019 Sechium edule HOM05D004897 ORTHO05D005928 8.6e-07 56.6 43 65.1
Zm00001eb280830 Zea mays HOM05D004897 ORTHO05D005928 8.6e-07 56.6 49 59.2
Zm00001eb068130 Zea mays HOM05D004897 ORTHO05D005928 1.1e-06 56.2 43 60.5
Migut.D01558 Erythranthe guttata HOM05D004897 ORTHO05D005928 1.5e-06 55.8 43 65.1
Zm00001eb382330 Zea mays HOM05D004897 ORTHO05D005928 1.5e-06 55.8 43 60.5
AL1G30560 Arabidopsis lyrata HOM05D004897 ORTHO05D005928 2.5e-06 55.1 43 65.1
Oeu041181.1 Olea europaea HOM05D004897 ORTHO05D005928 2.5e-06 55.1 47 68.1
CARHR018770 Cardamine hirsuta HOM05D004897 ORTHO05D005928 3.3e-06 54.7 42 69.0
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 3.3e-06 54.7 43 65.1
Atru.chr9.1748 Acer truncatum HOM05D004897 ORTHO05D005928 4.2e-06 54.3 41 68.3
Carub.0001s1783 Capsella rubella HOM05D004897 ORTHO05D005928 4.2e-06 54.3 42 66.7
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 4.2e-06 54.3 43 65.1
Aa31LG7G2880 Aethionema arabicum HOM05D004897 ORTHO05D005928 5.5e-06 53.9 43 62.8
arahy.Tifrunner.gnm1.ann1.Y8NJDB Arachis hypogaea HOM05D004897 ORTHO05D005928 5.5e-06 53.9 48 68.8
arahy.Tifrunner.gnm1.ann1.QTT902 Arachis hypogaea HOM05D004897 ORTHO05D005928 7.2e-06 53.5 48 66.7
MELO3C017351.2 Cucumis melo HOM05D004897 ORTHO05D005928 7.2e-06 53.5 43 62.8
CsaV3_1G004270 Cucumis sativus L. HOM05D004897 ORTHO05D005928 7.2e-06 53.5 43 62.8
AT1G18190 Arabidopsis thaliana HOM05D004897 ORTHO05D005928 9.5e-06 53.1 43 62.8


User provided reference genes

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