Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G049300 Prunus persica HOM05D000665 ORTHO05D000140 2.4e-47 191.8 95 100.0
Prupe.1G245200 Prunus persica HOM05D000665 ORTHO05D000140 1.9e-36 155.6 92 78.3
Prupe.6G167700 Prunus persica HOM05D000665 ORTHO05D000140 1.0e-34 149.8 92 75.0
Prupe.4G256700 Prunus persica HOM05D000665 ORTHO05D000140 2.6e-33 145.2 92 73.9
Prupe.5G014400 Prunus persica HOM05D000665 ORTHO05D000140 7.5e-25 117.1 58 94.8
Prupe.7G027800 Prunus persica HOM05D000665 ORTHO05D000140 7.5e-25 117.1 58 94.8
FAN26G1049 Fragaria x ananassa HOM05D000665 ORTHO05D000140 1.3e-21 106.3 66 68.2
FvH4_2g13781 Fragaria vesca HOM05D000665 ORTHO05D000140 1.5e-20 102.8 79 60.8
FvH4_4g15662 Fragaria vesca HOM05D000665 ORTHO05D000140 5.5e-20 100.9 90 53.3
Lj5g0014380 Lotus japonicus HOM05D000665 ORTHO05D000140 5.5e-20 100.9 81 49.4
RcHm_v2.0_Chr1g0330381 Rosa chinensis HOM05D000665 ORTHO05D000140 9.4e-20 100.1 58 77.6
Lj1g0005320 Lotus japonicus HOM05D000665 ORTHO05D000140 2.1e-19 99.0 76 50.0
Lj6g0001109 Lotus japonicus HOM05D000665 ORTHO05D000140 2.7e-19 98.6 81 48.1
Lj1g0011582 Lotus japonicus HOM05D000665 ORTHO05D000140 4.7e-19 97.8 76 50.0
Glyma.08G025200 Glycine max HOM05D000665 ORTHO05D000140 6.1e-19 97.4 67 58.2
Glyma.09G072900 Glycine max HOM05D000665 ORTHO05D000140 6.1e-19 97.4 67 58.2
FAN08G1891 Fragaria x ananassa HOM05D013617 ORTHO05D016313 8.0e-19 97.1 79 53.2
Glyma.11G208100 Glycine max HOM05D000665 ORTHO05D000140 8.0e-19 97.1 67 58.2
Lj2g0022922 Lotus japonicus HOM05D000665 ORTHO05D000140 8.0e-19 97.1 76 50.0
TPR.G40119 Trifolium pratense HOM05D000665 ORTHO05D000140 1.5e-17 92.8 86 44.2
Glyma.02G156600 Glycine max HOM05D000665 ORTHO05D000140 2.0e-17 92.4 90 44.4
Glyma.20G028300 Glycine max HOM05D000665 ORTHO05D000140 7.5e-17 90.5 62 58.1
COL.COLO4_11921 Corchorus olitorius HOM05D000665 ORTHO05D000140 1.3e-16 89.7 83 45.8
COL.COLO4_35899 Corchorus olitorius HOM05D000665 ORTHO05D000140 1.3e-16 89.7 83 45.8
Glyma.05G097200 Glycine max HOM05D000665 ORTHO05D000140 1.3e-16 89.7 90 43.3
Glyma.16G081300 Glycine max HOM05D000665 ORTHO05D000140 1.7e-16 89.4 90 43.3
COL.COLO4_16082 Corchorus olitorius HOM05D000665 ORTHO05D000140 2.2e-16 89.0 83 47.0
FAN27G2455 Fragaria x ananassa HOM05D001671 ORTHO05D000140 4.8e-16 87.8 58 65.5
COL.COLO4_13013 Corchorus olitorius HOM05D000665 ORTHO05D000140 5.4e-15 84.3 83 43.4
Glyma.03G069900 Glycine max HOM05D000665 ORTHO05D000140 5.4e-15 84.3 90 40.0
Glyma.18G141600 Glycine max HOM05D000665 ORTHO05D000140 7.0e-15 84.0 88 43.2
Prupe.5G014200 Prunus persica HOM05D000665 ORTHO05D000140 3.5e-14 81.6 44 81.8
Medtr7g102860 Medicago truncatula HOM05D000665 ORTHO05D000140 4.5e-14 81.3 87 41.4
COL.COLO4_07541 Corchorus olitorius HOM05D000665 ORTHO05D000140 7.7e-14 80.5 58 53.4
Glyma.09G131700 Glycine max HOM05D000665 ORTHO05D000140 7.7e-14 80.5 56 58.9
Glyma.11G158600 Glycine max HOM05D000665 ORTHO05D000140 7.7e-14 80.5 56 58.9
Glyma.05G132400 Glycine max HOM05D000665 ORTHO05D000140 1.0e-13 80.1 56 55.4
Glyma.08G287150 Glycine max HOM05D000665 ORTHO05D000140 1.0e-13 80.1 56 55.4
Glyma.08G267100 Glycine max HOM05D000665 ORTHO05D000140 1.7e-13 79.3 56 55.4
FAN08G1155 Fragaria x ananassa HOM05D013617 ORTHO05D016313 2.3e-13 79.0 86 50.0
FAN08G1969 Fragaria x ananassa HOM05D000665 ORTHO05D000140 2.3e-13 79.0 49 71.4
Glyma.19G070100 Glycine max HOM05D000665 ORTHO05D000140 2.9e-13 78.6 56 53.6
Nn6g33669 Nelumbo nucifera HOM05D000665 ORTHO05D000140 1.5e-12 76.3 87 42.5
Glyma.04G130400 Glycine max HOM05D000665 ORTHO05D000140 3.2e-12 75.1 56 55.4
Glyma.08G295300 Glycine max HOM05D000665 ORTHO05D000140 7.2e-12 73.9 56 53.6
Glyma.17G193900 Glycine max HOM05D000665 ORTHO05D000140 6.1e-11 70.9 56 51.8
Medtr7g061400 Medicago truncatula HOM05D000665 ORTHO05D000140 1.0e-10 70.1 56 50.0
FAN24G3347 Fragaria x ananassa HOM05D000665 ORTHO05D016313 6.8e-10 67.4 79 46.8
QL01p016350 Quercus lobata HOM05D000665 ORTHO05D000140 6.8e-10 67.4 72 40.3
QL01p016365 Quercus lobata HOM05D000665 ORTHO05D000140 2.0e-09 65.9 72 38.9
RcHm_v2.0_Chr7g0231381 Rosa chinensis HOM05D000665 ORTHO05D000140 2.6e-09 65.5 69 39.1
Haze_23288 Corylus avellana HOM05D000665 ORTHO05D000140 5.7e-09 64.3 73 37.0
Haze_23291 Corylus avellana HOM05D000665 ORTHO05D000140 5.7e-09 64.3 73 37.0
Glyma.06G254400 Glycine max HOM05D000665 ORTHO05D000140 7.5e-09 63.9 56 44.6
FAN26G0684 Fragaria x ananassa HOM05D013617 ORTHO05D016313 1.3e-08 63.2 69 49.3
Thecc.09G253400 Theobroma cacao HOM05D000665 ORTHO05D000140 2.2e-08 62.4 65 38.5
PSO541G0575 Papaver somniferum HOM05D000665 ORTHO05D000140 2.8e-08 62.0 64 37.5
Dinv29316 Davidia involucrata HOM05D000001 ORTHO05D000003 3.7e-08 61.6 72 43.1
EL10Ac2g04238 Beta vulgaris HOM05D009145 ORTHO05D000140 4.9e-08 61.2 66 39.4
EL10Ac5g11631 Beta vulgaris HOM05D009145 ORTHO05D000140 4.9e-08 61.2 66 39.4
Lj2g0005129 Lotus japonicus HOM05D000034 ORTHO05D000037 8.3e-08 60.5 49 49.0
Duzib168G0826 Durio zibethinus HOM05D000665 ORTHO05D000140 1.1e-07 60.1 73 34.2
SGA_v2.0_scaffold152G36847 Striga asiatica HOM05D000665 ORTHO05D000140 1.4e-07 59.7 67 38.8
Glyma.07G234900 Glycine max HOM05D000665 ORTHO05D000140 2.4e-07 58.9 71 36.6
EL10Ac9g20779 Beta vulgaris HOM05D009145 ORTHO05D000140 7.0e-07 57.4 66 37.9
AUR62027532 Chenopodium quinoa HOM05D000034 ORTHO05D000037 9.2e-07 57.0 66 34.8
Lj4C833G3 Lonicera japonica HOM05D000665 ORTHO05D000140 9.2e-07 57.0 64 39.1
Lj6g0024114 Lotus japonicus HOM05D000665 ORTHO05D000140 9.2e-07 57.0 71 38.0
ClCG03G012420 Citrullus lanatus HOM05D000665 ORTHO05D000140 1.6e-06 56.2 68 32.4
TAR629G1231 Trochodendron aralioides HOM05D000665 ORTHO05D000140 2.0e-06 55.8 55 40.0
EL10Ac4g08060 Beta vulgaris HOM05D009145 ORTHO05D000140 2.7e-06 55.5 66 36.4
COL.COLO4_06628 Corchorus olitorius HOM05D000665 ORTHO05D000140 2.7e-06 55.5 75 30.7
FAN23G1453 Fragaria x ananassa HOM05D013617 ORTHO05D016313 3.5e-06 55.1 90 35.6
Nn7g37086 Nelumbo nucifera HOM05D000665 ORTHO05D000140 4.5e-06 54.7 62 40.3
Rhsim13G0204800 Rhododendron simsii HOM05D000665 ORTHO05D000140 4.5e-06 54.7 76 35.5
arahy.Tifrunner.gnm1.ann1.0AP11M Arachis hypogaea HOM05D000034 ORTHO05D000037 7.8e-06 53.9 78 28.2
PSO801G0061 Papaver somniferum HOM05D000034 ORTHO05D000037 7.8e-06 53.9 75 26.7
TAR526G0001 Trochodendron aralioides HOM05D000665 ORTHO05D000140 7.8e-06 53.9 76 32.9


User provided reference genes

Program Settings