Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G046400 Prunus persica HOM05D005452 ORTHO05D006618 2.0e-53 212.2 111 100.0
RcHm_v2.0_Chr7g0208311 Rosa chinensis HOM05D005452 ORTHO05D006618 3.1e-38 161.8 112 79.5
MD09G1284200 Malus domestica HOM05D005452 ORTHO05D006618 9.0e-38 160.2 111 76.6
FvH4_5g21170 Fragaria vesca HOM05D005452 ORTHO05D006618 2.0e-37 159.1 113 81.4
FAN13G0782 Fragaria x ananassa HOM05D005452 ORTHO05D006618 7.6e-37 157.1 113 80.5
FAN08G2976 Fragaria x ananassa HOM05D005452 ORTHO05D006618 9.3e-35 150.2 108 79.6
FAN18G0628 Fragaria x ananassa HOM05D005452 ORTHO05D006618 3.5e-34 148.3 107 79.4
MD06G1040200 Malus domestica HOM05D005452 ORTHO05D006618 3.5e-34 148.3 109 74.3
FAN04G1087 Fragaria x ananassa HOM05D005452 ORTHO05D006618 6.0e-34 147.5 108 79.6
QL03p056962 Quercus lobata HOM05D005452 ORTHO05D006618 7.4e-32 140.6 110 70.0
Ciclev10033123m.g Citrus clementina HOM05D005452 ORTHO05D006618 9.6e-32 140.2 113 69.0
Lalb_Chr03g0040661 Lupinus albus HOM05D005452 ORTHO05D006618 1.3e-31 139.8 113 67.3
Sed0011581 Sechium edule HOM05D005452 ORTHO05D006618 1.3e-31 139.8 111 71.2
PGR102G3216 Punica granatum HOM05D005452 ORTHO05D006618 3.7e-31 138.3 113 68.1
GSVIVG01003295001 Vitis vinifera HOM05D005452 ORTHO05D006618 8.1e-31 137.1 111 72.1
ClCG10G012250 Citrullus lanatus HOM05D005452 ORTHO05D006618 1.8e-30 136.0 111 69.4
Thecc.02G263300 Theobroma cacao HOM05D005452 ORTHO05D006618 3.1e-30 135.2 112 69.6
Dinv15209 Davidia involucrata HOM05D005452 ORTHO05D006618 5.3e-30 134.4 111 69.4
Atru.chr11.2163 Acer truncatum HOM05D005452 ORTHO05D006618 6.9e-30 134.0 113 63.7
Lalb_Chr01g0021741 Lupinus albus HOM05D005452 ORTHO05D006618 9.0e-30 133.7 113 64.6
CSS0031935 Camellia sinensis var. sinensis HOM05D005452 ORTHO05D006618 1.2e-29 133.3 112 70.5
MD12G1125700 Malus domestica HOM05D005452 ORTHO05D006618 1.2e-29 133.3 108 66.7
Duzib268G1139 Durio zibethinus HOM05D005452 ORTHO05D006618 1.5e-29 132.9 112 68.8
MD04G1159200 Malus domestica HOM05D005452 ORTHO05D006618 2.0e-29 132.5 108 66.7
CiPaw.05G172100 Carya illinoinensis HOM05D005452 ORTHO05D006618 2.6e-29 132.1 115 65.2
TWI36G1628 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 3.4e-29 131.7 111 66.7
Lj4g0014743 Lotus japonicus HOM05D005452 ORTHO05D006618 4.5e-29 131.3 113 66.4
Hund25399 Selenicereus undatus HOM05D005452 ORTHO05D006618 5.8e-29 131.0 111 67.6
DCAR_003344 Daucus carota HOM05D005452 ORTHO05D006618 7.6e-29 130.6 105 69.5
Hund06040 Selenicereus undatus HOM05D005452 ORTHO05D006618 7.6e-29 130.6 107 70.1
TPR.G32914 Trifolium pratense HOM05D005452 ORTHO05D006618 7.6e-29 130.6 111 64.9
TAR629G2696 Trochodendron aralioides HOM05D005452 ORTHO05D006618 7.6e-29 130.6 111 66.7
AUR62024237 Chenopodium quinoa HOM05D005452 ORTHO05D006618 9.9e-29 130.2 108 68.5
Lj5g0027337 Lotus japonicus HOM05D005452 ORTHO05D006618 9.9e-29 130.2 113 65.5
TAR371G0357 Trochodendron aralioides HOM05D005452 ORTHO05D006618 9.9e-29 130.2 111 67.6
Lsat_1_v5_gn_4_85301 Lactuca sativa HOM05D005452 ORTHO05D006618 2.2e-28 129.0 108 64.8
Glyma.18G249300 Glycine max HOM05D005452 ORTHO05D006618 2.9e-28 128.6 113 64.6
Sc04g0009650 Simmondsia chinensis HOM05D005452 ORTHO05D006618 2.9e-28 128.6 111 66.7
Actinidia08127 Actinidia chinensis HOM05D005452 ORTHO05D006618 3.8e-28 128.3 111 65.8
Glyma.09G244200 Glycine max HOM05D005452 ORTHO05D006618 3.8e-28 128.3 112 65.2
Cpa.g.c31584 Carica papaya HOM05D005452 ORTHO05D006618 6.4e-28 127.5 107 68.2
HanXRQChr12g0371911 Helianthus annuus HOM05D005452 ORTHO05D006618 6.4e-28 127.5 109 65.1
CiPaw.04G056800 Carya illinoinensis HOM05D005452 ORTHO05D006618 8.4e-28 127.1 102 68.6
CANSAT11G1680 Cannabis sativa HOM05D005452 ORTHO05D006618 1.1e-27 126.7 111 65.8
CsaV3_3G032030 Cucumis sativus L. HOM05D005452 ORTHO05D006618 1.1e-27 126.7 111 67.6
THA.LOC104805276 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 1.4e-27 126.3 111 64.9
vmacro06707 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 1.4e-27 126.3 110 67.3
EL10Ac5g10516 Beta vulgaris HOM05D005452 ORTHO05D006618 1.9e-27 125.9 109 62.4
Eucgr.B03269 Eucalyptus grandis HOM05D005452 ORTHO05D006618 2.4e-27 125.6 111 68.5
Potri.010G048600 Populus trichocarpa HOM05D005452 ORTHO05D006618 2.4e-27 125.6 115 64.3
AUR62005503 Chenopodium quinoa HOM05D005452 ORTHO05D006618 3.2e-27 125.2 99 70.7
Lsat_1_v5_gn_8_152800 Lactuca sativa HOM05D005452 ORTHO05D006618 3.2e-27 125.2 109 64.2
Oeu056705.1 Olea europaea HOM05D005452 ORTHO05D006618 3.2e-27 125.2 110 65.5
Solyc10g054060.2 Solanum lycopersicum HOM05D005452 ORTHO05D006618 3.2e-27 125.2 104 67.3
Actinidia01359 Actinidia chinensis HOM05D005452 ORTHO05D006618 4.2e-27 124.8 111 66.7
Gohir.A05G223400 Gossypium hirsutum HOM05D005452 ORTHO05D006618 5.5e-27 124.4 112 66.1
Gorai.009G233700 Gossypium raimondii HOM05D005452 ORTHO05D006618 5.5e-27 124.4 106 67.9
Hma1.2p1_0079F.1_g041110 Hydrangea macrophylla HOM05D005452 ORTHO05D006618 5.5e-27 124.4 98 72.4
Sopen10g023920 Solanum pennellii HOM05D005452 ORTHO05D006618 5.5e-27 124.4 106 67.0
Sp2g15510 Schrenkiella parvula HOM05D005452 ORTHO05D006618 7.1e-27 124.0 111 64.0
VMungo1383G1569 Vigna mungo HOM05D005452 ORTHO05D006618 9.3e-27 123.6 113 63.7
Manes.13G021600 Manihot esculenta HOM05D005452 ORTHO05D006618 1.2e-26 123.2 112 64.3
Rhsim12G0039600 Rhododendron simsii HOM05D005452 ORTHO05D006618 1.2e-26 123.2 78 84.6
TWI18G1019 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 1.2e-26 123.2 111 62.2
Ca_14963_v3 Cicer arietinum L. HOM05D005452 ORTHO05D006618 1.6e-26 122.9 113 62.8
MELO3C030920.2 Cucumis melo HOM05D005452 ORTHO05D006618 2.1e-26 122.5 108 66.7
Psat5g193600 Pisum sativum HOM05D005452 ORTHO05D006618 2.1e-26 122.5 111 64.9
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 2.7e-26 122.1 109 62.4
Phvul.008G048300 Phaseolus vulgaris HOM05D005452 ORTHO05D006618 3.5e-26 121.7 113 61.9
COL.COLO4_23485 Corchorus olitorius HOM05D005452 ORTHO05D006618 7.9e-26 120.6 78 80.8
ECA233G5110 Erigeron canadensis HOM05D005452 ORTHO05D006618 7.9e-26 120.6 111 62.2
Carub.0005s0428 Capsella rubella HOM05D005452 ORTHO05D006618 1.0e-25 120.2 111 63.1
Cfa009234 Carpinus fangiana HOM05D005452 ORTHO05D006618 1.0e-25 120.2 107 63.6
Lj3C54T6 Lonicera japonica HOM05D005452 ORTHO05D006618 1.0e-25 120.2 77 80.5
MD02G1109400 Malus domestica HOM05D005452 ORTHO05D006618 1.0e-25 120.2 81 76.5
Medtr3g464760 Medicago truncatula HOM05D005452 ORTHO05D006618 1.0e-25 120.2 113 62.8
VMungo1080G1735 Vigna mungo HOM05D005452 ORTHO05D006618 1.0e-25 120.2 110 62.7
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.3e-25 119.8 112 62.5
THA.LOC104824009 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 1.3e-25 119.8 111 62.2
Thhalv10005186m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 3.0e-25 118.6 111 62.2
Thhalv10005184m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 1.1e-24 116.7 111 61.3
unitig_22.g6942 Utricularia gibba HOM05D005452 ORTHO05D006618 1.1e-24 116.7 80 77.5
CDE10G1265 Ceratophyllum demersum HOM05D005452 ORTHO05D006618 1.5e-24 116.3 111 55.9
BcaB07g30231 Brassica carinata HOM05D005452 ORTHO05D006618 1.9e-24 115.9 111 61.3
BcaC03g17336 Brassica carinata HOM05D005452 ORTHO05D006618 1.9e-24 115.9 111 61.3
Nitab4.5_0000524g0050 Nicotiana tabacum HOM05D005452 ORTHO05D006618 1.9e-24 115.9 108 62.0
SGA_v2.0_scaffold293G47424 Striga asiatica HOM05D005452 ORTHO05D006618 1.9e-24 115.9 97 67.0
Nitab4.5_0004217g0010 Nicotiana tabacum HOM05D001410 ORTHO05D006618 5.6e-24 114.4 107 62.6
Nitab4.5_0002322g0150 Nicotiana tabacum HOM05D001410 ORTHO05D006618 7.4e-24 114.0 110 60.9
CARHR147370 Cardamine hirsuta HOM05D005452 ORTHO05D006618 9.6e-24 113.6 111 61.3
A06p42060 Brassica napus HOM05D005452 ORTHO05D006618 1.3e-23 113.2 108 61.1
BraA06t27123Z Brassica rapa HOM05D005452 ORTHO05D006618 1.3e-23 113.2 108 61.1
Lj4g0021307 Lotus japonicus HOM05D005452 ORTHO05D006618 1.3e-23 113.2 111 61.3
Gohir.D05G226100 Gossypium hirsutum HOM05D005452 ORTHO05D006618 1.6e-23 112.8 78 80.8
Nn1g08774 Nelumbo nucifera HOM05D005452 ORTHO05D006618 1.6e-23 112.8 85 67.1
C07p35420 Brassica napus HOM05D005452 ORTHO05D006618 2.1e-23 112.5 108 61.1
SalBow6G0301 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.1e-23 112.5 78 76.9
SalBow6G0335 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.1e-23 112.5 78 76.9
SalBow6G1267 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.1e-23 112.5 78 76.9
SalBow6G2856 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.1e-23 112.5 78 76.9
SalBow6G4107 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.1e-23 112.5 78 76.9
SalBow6G4340 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.1e-23 112.5 78 76.9
SalBow6G4977 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.1e-23 112.5 78 76.9
BolC7t44066H Brassica oleracea HOM05D005452 ORTHO05D006618 2.8e-23 112.1 108 60.2
Cc01_g03580 Coffea canephora HOM05D005452 ORTHO05D006618 2.8e-23 112.1 111 59.5
AL5G15130 Arabidopsis lyrata HOM05D005452 ORTHO05D006618 3.7e-23 111.7 85 71.8
A02p34530 Brassica napus HOM05D005452 ORTHO05D006618 3.7e-23 111.7 108 60.2
C02p52850 Brassica napus HOM05D005452 ORTHO05D006618 3.7e-23 111.7 108 60.2
BraA02t08463Z Brassica rapa HOM05D005452 ORTHO05D006618 3.7e-23 111.7 108 60.2
ATR0691G211 Amborella trichopoda HOM05D005452 ORTHO05D006618 4.8e-23 111.3 77 75.3
Migut.K00615 Erythranthe guttata HOM05D005452 ORTHO05D006618 4.8e-23 111.3 81 75.3
SGA_v2.0_scaffold12G06036 Striga asiatica HOM05D005452 ORTHO05D006618 6.2e-23 110.9 81 74.1
CAN.G128.103 Capsicum annuum HOM05D005452 ORTHO05D000001 1.1e-22 110.2 107 59.8
Oeu049174.1 Olea europaea HOM05D005452 ORTHO05D006618 1.4e-22 109.8 108 61.1
SalBow6G3385 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.4e-22 109.8 77 75.3
SalBow6G6484 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.4e-22 109.8 78 75.6
AT3G26360 Arabidopsis thaliana HOM05D005452 ORTHO05D006618 1.8e-22 109.4 111 59.5
MBI15_g04991_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 2.4e-22 109.0 83 71.1
Aa31LG2G6150 Aethionema arabicum HOM05D005452 ORTHO05D006618 3.1e-22 108.6 89 66.3
SHI03748 Sapria himalayana HOM05D005452 ORTHO05D006618 3.1e-22 108.6 109 55.0
PSO017G6805 Papaver somniferum HOM05D005452 ORTHO05D006618 5.3e-22 107.8 110 57.3
BolC2t11364H Brassica oleracea HOM05D005452 ORTHO05D006618 6.9e-22 107.5 108 58.3
PSO210G2974 Papaver somniferum HOM05D005452 ORTHO05D006618 1.2e-21 106.7 110 57.3
Peaxi162Scf00128g00434 Petunia axillaris HOM05D005452 ORTHO05D006618 3.4e-21 105.1 77 74.0
Peaxi162Scf00067g00116 Petunia axillaris HOM05D005452 ORTHO05D006618 4.5e-21 104.8 106 57.5
HPP92_017381 Vanilla planifolia HOM05D005452 ORTHO05D006618 7.6e-21 104.0 108 52.8
Aqoxy3G01257 Aquilegia oxysepala HOM05D005452 ORTHO05D006618 1.7e-20 102.8 113 53.1
Zm00001eb217020 Zea mays HOM05D005452 ORTHO05D006618 1.0e-17 93.6 85 57.6
SalBow6G5661 Salvia bowleyana HOM05D005452 ORTHO05D006618 5.1e-17 91.3 64 75.0
vmacro01118 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 6.7e-17 90.9 89 60.7
Zm00001eb053730 Zea mays HOM05D005452 ORTHO05D006618 1.5e-16 89.7 85 56.5
MBI15_g11303_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 3.3e-16 88.6 88 61.4
SEGI_39778 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 4.3e-16 88.2 78 61.5
SEGI_27388 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 7.4e-16 87.4 78 61.5
Os03g0694700 Oryza sativa ssp. japonica HOM05D005452 ORTHO05D006618 8.2e-15 84.0 83 59.0
unitig_8.g2920 Utricularia gibba HOM05D005452 ORTHO05D006618 6.1e-10 67.8 53 73.6
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 1.4e-09 66.6 84 48.8
Medtr3g450960 Medicago truncatula HOM05D005452 ORTHO05D006618 1.8e-09 66.2 57 68.4
Nn1g09342 Nelumbo nucifera HOM05D005452 ORTHO05D006618 1.9e-08 62.8 60 56.7
SalBow6G2133 Salvia bowleyana HOM05D009895 ORTHO05D006618 1.3e-07 60.1 43 67.4
SalBow6G0426 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.8e-07 58.2 38 78.9


User provided reference genes

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