Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G040300 Prunus persica HOM05D007142 ORTHO05D008983 5.0e-139 497.7 234 100.0
MD06G1031800 Malus domestica HOM05D007142 ORTHO05D008983 6.6e-123 444.1 235 92.3
FvH4_5g21680 Fragaria vesca HOM05D007142 ORTHO05D008983 1.8e-112 409.5 239 86.6
COL.COLO4_17070 Corchorus olitorius HOM05D007142 ORTHO05D008983 3.1e-112 408.7 234 82.9
FAN08G2513 Fragaria x ananassa HOM05D007142 ORTHO05D008983 3.1e-112 408.7 237 86.1
Thecc.03G230800 Theobroma cacao HOM05D007142 ORTHO05D008983 3.1e-112 408.7 234 83.3
GSVIVG01013184001 Vitis vinifera HOM05D007142 ORTHO05D008983 3.1e-112 408.7 234 83.8
Duzib205G0350 Durio zibethinus HOM05D007142 ORTHO05D008983 6.8e-112 407.5 232 81.5
FAN18G0559 Fragaria x ananassa HOM05D007142 ORTHO05D008983 6.8e-112 407.5 239 86.2
Potri.003G089900 Populus trichocarpa HOM05D007142 ORTHO05D008983 6.8e-112 407.5 232 84.5
CiPaw.11G091400 Carya illinoinensis HOM05D007142 ORTHO05D008983 5.8e-111 404.4 234 84.2
TAR629G1364 Trochodendron aralioides HOM05D007142 ORTHO05D008983 1.7e-110 402.9 232 83.2
RcHm_v2.0_Chr7g0209181 Rosa chinensis HOM05D007142 ORTHO05D008983 2.2e-110 402.5 235 84.3
Ciclev10032530m.g Citrus clementina HOM05D007142 ORTHO05D008983 6.4e-110 401.0 239 82.8
Gorai.004G186600 Gossypium raimondii HOM05D007142 ORTHO05D008983 6.4e-110 401.0 234 81.2
Glyma.17G154151 Glycine max HOM05D007142 ORTHO05D008983 8.3e-110 400.6 234 82.1
QL12p006204 Quercus lobata HOM05D007142 ORTHO05D008983 8.3e-110 400.6 233 81.1
Haze_08264 Corylus avellana HOM05D007142 ORTHO05D008983 1.9e-109 399.4 234 82.1
Gohir.D08G178400 Gossypium hirsutum HOM05D007142 ORTHO05D008983 4.1e-109 398.3 234 80.8
TPR.G28665 Trifolium pratense HOM05D007142 ORTHO05D008983 4.1e-109 398.3 234 80.8
Actinidia25952 Actinidia chinensis HOM05D007142 ORTHO05D008983 1.6e-108 396.4 234 81.2
Eucgr.D02183 Eucalyptus grandis HOM05D007142 ORTHO05D008983 1.6e-108 396.4 234 79.1
Manes.17G016003 Manihot esculenta HOM05D007142 ORTHO05D008983 3.5e-108 395.2 234 78.6
Lalb_Chr09g0329501 Lupinus albus HOM05D007142 ORTHO05D008983 7.8e-108 394.0 235 79.6
Medtr4g098620 Medicago truncatula HOM05D007142 ORTHO05D008983 7.8e-108 394.0 234 79.5
VMungo0251G3176 Vigna mungo HOM05D007142 ORTHO05D008983 3.0e-107 392.1 234 81.2
Dinv28934 Davidia involucrata HOM05D007142 ORTHO05D008983 1.9e-106 389.4 234 80.8
Phvul.003G229700 Phaseolus vulgaris HOM05D007142 ORTHO05D008983 4.3e-106 388.3 234 79.9
CANSAT21G2079 Cannabis sativa HOM05D007142 ORTHO05D008983 7.3e-106 387.5 245 76.7
TWI15G0113 Tripterygium wilfordii HOM05D007142 ORTHO05D008983 9.5e-106 387.1 219 84.0
Lj4g0022330 Lotus japonicus HOM05D007142 ORTHO05D008983 1.2e-105 386.7 235 80.9
Sabra03G0059800 Salix brachista HOM05D007142 ORTHO05D008983 8.1e-105 384.0 254 74.4
Psat4g079200 Pisum sativum HOM05D007142 ORTHO05D008983 1.4e-104 383.3 236 78.4
PSO339G0102 Papaver somniferum HOM05D007142 ORTHO05D008983 3.1e-104 382.1 221 81.4
DCAR_032211 Daucus carota HOM05D007142 ORTHO05D008983 4.0e-104 381.7 233 76.8
PSO384G0274 Papaver somniferum HOM05D007142 ORTHO05D008983 8.9e-104 380.6 221 81.0
Atru.chr6.1752 Acer truncatum HOM05D007142 ORTHO05D008983 1.5e-103 379.8 236 78.0
EL10Ac5g12171 Beta vulgaris HOM05D007142 ORTHO05D008983 2.0e-103 379.4 234 77.4
Aqoxy3G02453 Aquilegia oxysepala HOM05D007142 ORTHO05D008983 3.4e-103 378.6 222 82.9
Lsat_1_v5_gn_3_16621 Lactuca sativa HOM05D007142 ORTHO05D008983 2.2e-102 375.9 212 84.0
vmacro00342 Vaccinium macrocarpon HOM05D007142 ORTHO05D008983 3.7e-102 375.2 236 78.0
Ah.12g054590 Amaranthus hybridus HOM05D007142 ORTHO05D008983 6.4e-102 374.4 235 77.4
PGR031G3753 Punica granatum HOM05D007142 ORTHO05D008983 8.3e-102 374.0 236 77.1
HanXRQChr17g0535721 Helianthus annuus HOM05D007142 ORTHO05D008983 1.4e-101 373.2 234 78.2
ECA246G1460 Erigeron canadensis HOM05D007142 ORTHO05D008983 3.2e-101 372.1 234 77.8
Nitab4.5_0003100g0010 Nicotiana tabacum HOM05D007142 ORTHO05D008983 4.1e-101 371.7 218 81.2
ClCG10G001790 Citrullus lanatus HOM05D007142 ORTHO05D008983 1.6e-100 369.8 236 75.0
AUR62018753 Chenopodium quinoa HOM05D007142 ORTHO05D008983 2.7e-100 369.0 235 76.6
Cc08_g02450 Coffea canephora HOM05D007142 ORTHO05D000161 3.5e-100 368.6 236 74.6
Nitab4.5_0014378g0020 Nicotiana tabacum HOM05D007142 ORTHO05D008983 1.0e-99 367.1 219 80.4
ATR0049G055 Amborella trichopoda HOM05D007142 ORTHO05D008983 1.3e-99 366.7 218 81.7
arahy.Tifrunner.gnm1.ann1.J3YA34 Arachis hypogaea HOM05D007142 ORTHO05D008983 1.7e-99 366.3 237 74.3
CsaV3_3G001880 Cucumis sativus L. HOM05D007142 ORTHO05D008983 1.7e-99 366.3 238 74.8
Cpa.g.sc665.3 Carica papaya HOM05D007142 ORTHO05D008983 3.0e-99 365.5 237 75.1
FAN04G2755 Fragaria x ananassa HOM05D007142 ORTHO05D008983 2.5e-98 362.5 238 79.8
CAN.G201.17 Capsicum annuum HOM05D007142 ORTHO05D008983 7.3e-98 360.9 215 80.0
Sopen06g021290 Solanum pennellii HOM05D007142 ORTHO05D008983 7.3e-98 360.9 214 81.3
Solyc06g061090.3 Solanum lycopersicum HOM05D007142 ORTHO05D008983 9.5e-98 360.5 214 81.3
MELO3C013862.2 Cucumis melo HOM05D007142 ORTHO05D008983 1.2e-97 360.1 224 79.0
SalBow4G2536 Salvia bowleyana HOM05D007142 ORTHO05D008983 2.1e-97 359.4 222 77.0
SGA_v2.0_scaffold4519G54498 Striga asiatica HOM05D007142 ORTHO05D008983 4.7e-97 358.2 220 77.7
Sed0005643 Sechium edule HOM05D007142 ORTHO05D008983 1.4e-96 356.7 239 73.6
CDE11G1210 Ceratophyllum demersum HOM05D007142 ORTHO05D008983 6.8e-96 354.4 222 74.3
Aa31LG2G13430 Aethionema arabicum HOM05D007142 ORTHO05D008983 2.0e-95 352.8 239 73.6
Migut.F01892 Erythranthe guttata HOM05D007142 ORTHO05D008983 5.8e-95 351.3 236 73.7
THA.LOC104807961 Tarenaya hassleriana HOM05D007142 ORTHO05D008983 7.6e-95 350.9 243 71.6
Thhalv10008641m.g Eutrema salsugineum HOM05D007142 ORTHO05D008983 2.9e-94 349.0 240 74.6
Sc10g0005600 Simmondsia chinensis HOM05D007142 ORTHO05D008983 8.4e-94 347.4 219 74.9
AT1G32520 Arabidopsis thaliana HOM05D007142 ORTHO05D008983 1.1e-93 347.1 241 73.0
A09p33690 Brassica napus HOM05D007142 ORTHO05D008983 2.4e-93 345.9 238 73.9
CARHR031970 Cardamine hirsuta HOM05D007142 ORTHO05D008983 3.2e-93 345.5 241 72.2
Carub.0001s3093 Capsella rubella HOM05D007142 ORTHO05D008983 7.1e-93 344.4 242 71.9
C05p31960 Brassica napus HOM05D007142 ORTHO05D008983 9.2e-93 344.0 238 73.5
BolC5t31922H Brassica oleracea HOM05D007142 ORTHO05D008983 9.2e-93 344.0 238 73.5
BcaB07g32947 Brassica carinata HOM05D007142 ORTHO05D008983 1.2e-92 343.6 224 76.8
BraA09t38918Z Brassica rapa HOM05D007142 ORTHO05D008983 1.6e-92 343.2 238 73.5
BcaC05g27290 Brassica carinata HOM05D007142 ORTHO05D008983 2.7e-92 342.4 238 73.1
AL1G46770 Arabidopsis lyrata HOM05D007142 ORTHO05D008983 1.0e-91 340.5 242 74.0
MSTRG.9125 Avicennia marina HOM05D007142 ORTHO05D008983 1.0e-91 340.5 234 71.4
Peaxi162Scf00603g00413 Petunia axillaris HOM05D007142 ORTHO05D008983 1.5e-90 336.7 218 74.8
Lj2C242T12 Lonicera japonica HOM05D007142 ORTHO05D008983 2.5e-90 335.9 173 91.3
HPP92_004467 Vanilla planifolia HOM05D007142 ORTHO05D008983 3.3e-90 335.5 215 72.1
AUR62007246 Chenopodium quinoa HOM05D007142 ORTHO05D008983 9.6e-90 334.0 204 77.5
FAN13G1057 Fragaria x ananassa HOM05D007142 ORTHO05D008983 1.2e-89 333.6 199 83.9
Nn6g33627 Nelumbo nucifera HOM05D007142 ORTHO05D008983 1.6e-89 333.2 173 90.2
HPP92_004488 Vanilla planifolia HOM05D007142 ORTHO05D008983 1.1e-88 330.5 215 71.2
Rhsim11G0012900 Rhododendron simsii HOM05D007142 ORTHO05D008983 4.4e-87 325.1 179 86.6
PGSC0003DMG400002104 Solanum tuberosum HOM05D007142 ORTHO05D008983 1.4e-85 320.1 197 77.7
Mapoly0005s0008 Marchantia polymorpha HOM05D007142 ORTHO05D008983 2.1e-84 316.2 218 67.9
Sp1g28380 Schrenkiella parvula HOM05D007142 ORTHO05D008983 2.1e-84 316.2 205 77.6
unitig_32.g11901 Utricularia gibba HOM05D007142 ORTHO05D008983 8.7e-83 310.8 223 68.6
Zm00001eb090700 Zea mays HOM05D007142 ORTHO05D008983 2.5e-82 309.3 220 66.4
MBI04_g22954_MAGBIO Magnolia biondii HOM05D007142 ORTHO05D008983 7.3e-82 307.8 162 89.5
AagrBONN_evm.TU.Sc2ySwM_362.655 Anthoceros agrestis HOM05D007142 ORTHO05D008983 4.9e-78 295.0 208 69.7
arahy.Tifrunner.gnm1.ann1.KYR2NU Arachis hypogaea HOM05D007142 ORTHO05D008983 9.3e-77 290.8 233 63.9
Gohir.A08G158100 Gossypium hirsutum HOM05D007142 ORTHO05D008983 7.4e-74 281.2 178 74.2
SEGI_34411 Sequoiadendron giganteum HOM05D007142 ORTHO05D008983 1.3e-73 280.4 198 67.7
SMO367G0110 Selaginella moellendorffii HOM05D007142 ORTHO05D008983 1.4e-45 187.2 126 69.8
Os11g0220300 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 9.4e-45 184.5 146 61.0
PRCOL_00005169 Prasinoderma coloniale HOM05D007142 ORTHO05D008983 1.4e-43 180.6 191 51.3
MCO11G179 Micromonas commoda HOM05D007142 ORTHO05D008983 3.6e-28 129.4 189 41.3
Os07g0120051 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 2.8e-25 119.8 119 53.8
Glyma.05G112900 Glycine max HOM05D007142 ORTHO05D008983 1.1e-24 117.9 188 41.5
Hma1.2p1_0585F.1_g183620 Hydrangea macrophylla HOM05D007142 ORTHO05D008983 3.1e-24 116.3 62 90.3
Oeu029960.1 Olea europaea HOM05D007142 ORTHO05D008983 3.8e-22 109.4 62 87.1
Cre10.g446500 Chlamydomonas reinhardtii HOM05D007142 ORTHO05D008983 2.6e-18 96.7 207 34.8
Dinv25200 Davidia involucrata HOM05D007142 ORTHO05D008983 2.4e-16 90.1 150 40.0
MCO05G635 Micromonas commoda HOM05D007142 ORTHO05D008983 2.8e-12 76.6 190 28.4
Os11g0275900 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 1.3e-09 67.8 42 76.2
Os06g0318400 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 2.7e-07 60.1 78 43.6


User provided reference genes

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