Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G039700 Prunus persica HOM05D007134 ORTHO05D009004 1.9e-186 655.6 315 100.0
MD06G1032400 Malus domestica HOM05D007134 ORTHO05D009004 6.7e-155 550.8 316 83.9
RcHm_v2.0_Chr7g0209231 Rosa chinensis HOM05D007134 ORTHO05D009004 8.5e-142 507.3 315 77.1
FAN08G2031 Fragaria x ananassa HOM05D007134 ORTHO05D009004 3.2e-141 505.4 315 77.1
FvH4_5g21740 Fragaria vesca HOM05D007134 ORTHO05D009004 1.2e-140 503.4 315 76.5
FAN13G3184 Fragaria x ananassa HOM05D007134 ORTHO05D009004 1.5e-138 496.5 315 75.6
FAN18G1678 Fragaria x ananassa HOM05D007134 ORTHO05D009004 1.1e-136 490.3 340 70.9
CiPaw.11G091800 Carya illinoinensis HOM05D007134 ORTHO05D009004 2.2e-134 482.6 321 71.7
Cfa012416 Carpinus fangiana HOM05D007134 ORTHO05D009004 3.0e-131 472.2 318 70.8
CANSAT21G0276 Cannabis sativa HOM05D007134 ORTHO05D009004 1.7e-129 466.5 312 70.5
Dinv28939 Davidia involucrata HOM05D007134 ORTHO05D009004 6.3e-129 464.5 307 71.7
Atru.chr6.1744 Acer truncatum HOM05D007134 ORTHO05D009004 5.3e-128 461.5 310 70.3
Haze_08260 Corylus avellana HOM05D007134 ORTHO05D009004 2.7e-127 459.1 334 66.8
Hma1.2p1_0991F.1_g244990 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 2.7e-127 459.1 300 72.3
Hma1.2p1_2785F.1_g328490 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 2.7e-127 459.1 299 72.6
TAR629G3531 Trochodendron aralioides HOM05D007134 ORTHO05D009004 5.9e-127 458.0 306 69.0
Potri.001G144000 Populus trichocarpa HOM05D007134 ORTHO05D009004 7.7e-127 457.6 320 67.5
TWI81G0484 Tripterygium wilfordii HOM05D007134 ORTHO05D009004 2.2e-126 456.1 302 70.2
COL.COLO4_17065 Corchorus olitorius HOM05D007134 ORTHO05D009004 2.9e-126 455.7 302 69.9
Thecc.03G230400 Theobroma cacao HOM05D007134 ORTHO05D009004 6.5e-126 454.5 302 70.5
Peaxi162Scf00006g04220 Petunia axillaris HOM05D007134 ORTHO05D009004 2.5e-125 452.6 300 69.7
GSVIVG01013189001 Vitis vinifera HOM05D007134 ORTHO05D009004 1.2e-124 450.3 290 74.1
Duzib205G1618 Durio zibethinus HOM05D007134 ORTHO05D009004 1.6e-124 449.9 301 70.4
CSS0021568 Camellia sinensis var. sinensis HOM05D007134 ORTHO05D009004 4.7e-124 448.4 317 67.2
Actinidia03384 Actinidia chinensis HOM05D007134 ORTHO05D009004 6.1e-124 448.0 322 66.8
PSO782G3567 Papaver somniferum HOM05D007134 ORTHO05D009004 1.4e-123 446.8 305 66.6
ClCG10G001760 Citrullus lanatus HOM05D007134 ORTHO05D009004 6.8e-123 444.5 312 65.4
TPR.G28658 Trifolium pratense HOM05D007134 ORTHO05D009004 6.8e-123 444.5 315 67.3
Gohir.D12G211900 Gossypium hirsutum HOM05D007134 ORTHO05D009004 1.2e-122 443.7 301 68.8
Gorai.008G227500 Gossypium raimondii HOM05D007134 ORTHO05D009004 1.2e-122 443.7 301 68.8
Manes.15G172000 Manihot esculenta HOM05D007134 ORTHO05D009004 2.6e-122 442.6 302 70.2
Sabra01G0112400 Salix brachista HOM05D007134 ORTHO05D009004 7.5e-122 441.0 352 62.2
Solyc08g077090.3 Solanum lycopersicum HOM05D007134 ORTHO05D009004 6.3e-121 438.0 296 67.6
Nitab4.5_0002931g0030 Nicotiana tabacum HOM05D007134 ORTHO05D009004 3.1e-120 435.6 298 67.1
Ca_22068_v3 Cicer arietinum L. HOM05D007134 ORTHO05D009004 5.4e-120 434.9 314 64.0
Psat4g079040 Pisum sativum HOM05D007134 ORTHO05D009004 9.1e-120 434.1 304 67.1
Lj8A293T18 Lonicera japonica HOM05D007134 ORTHO05D009004 2.7e-119 432.6 297 67.7
MELO3C013860.2 Cucumis melo HOM05D007134 ORTHO05D009004 7.7e-119 431.0 314 63.4
Sopen08g025670 Solanum pennellii HOM05D007134 ORTHO05D009004 3.8e-118 428.7 296 66.6
Glyma.05G112400 Glycine max HOM05D007134 ORTHO05D009004 6.5e-118 427.9 305 65.6
Lj4g0007831 Lotus japonicus HOM05D007134 ORTHO05D009004 1.5e-117 426.8 299 67.2
CAN.G1659.3 Capsicum annuum HOM05D007134 ORTHO05D009004 1.9e-117 426.4 301 65.4
Glyma.17G154600 Glycine max HOM05D007134 ORTHO05D009004 1.9e-117 426.4 298 67.1
Phvul.003G230000 Phaseolus vulgaris HOM05D007134 ORTHO05D009004 1.9e-117 426.4 313 63.3
Sed0020644 Sechium edule HOM05D007134 ORTHO05D009004 3.2e-117 425.6 304 65.5
PGSC0003DMG400017530 Solanum tuberosum HOM05D007134 ORTHO05D009004 7.2e-117 424.5 323 62.2
CsaV3_3G001860 Cucumis sativus L. HOM05D007134 ORTHO05D009004 9.5e-117 424.1 307 64.8
Lalb_Chr05g0220571 Lupinus albus HOM05D007134 ORTHO05D009004 1.2e-116 423.7 299 66.6
PGR042G2424 Punica granatum HOM05D007134 ORTHO05D009004 1.8e-115 419.9 302 65.9
Nitab4.5_0001276g0070 Nicotiana tabacum HOM05D007134 ORTHO05D009004 2.3e-115 419.5 287 67.2
Aqoxy3G02427 Aquilegia oxysepala HOM05D007134 ORTHO05D009004 6.8e-115 417.9 306 63.7
Sc01g0007540 Simmondsia chinensis HOM05D007134 ORTHO05D009004 1.2e-114 417.2 303 64.7
Ciclev10032247m.g Citrus clementina HOM05D007134 ORTHO05D009004 2.6e-114 416.0 294 65.6
THA.LOC104814437 Tarenaya hassleriana HOM05D007134 ORTHO05D009004 1.7e-113 413.3 294 64.6
arahy.Tifrunner.gnm1.ann1.40JZG2 Arachis hypogaea HOM05D007134 ORTHO05D009004 2.8e-113 412.5 309 64.4
arahy.Tifrunner.gnm1.ann1.2XNM6Q Arachis hypogaea HOM05D007134 ORTHO05D009004 1.1e-112 410.6 309 64.1
EL10Ac5g12144 Beta vulgaris HOM05D007134 ORTHO05D009004 4.1e-112 408.7 289 66.4
Eucgr.E00292 Eucalyptus grandis HOM05D007134 ORTHO05D009004 7.0e-112 407.9 314 61.1
AL4G31350 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 2.0e-111 406.4 296 64.9
AT2G35320 Arabidopsis thaliana HOM05D007134 ORTHO05D009004 1.3e-110 403.7 299 63.2
AL457U10010 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 1.7e-110 403.3 296 64.5
Cc08_g02480 Coffea canephora HOM05D007134 ORTHO05D009004 2.3e-110 402.9 290 65.5
Ah.12g054890 Amaranthus hybridus HOM05D007134 ORTHO05D009004 2.9e-110 402.5 293 64.2
FAN04G0135 Fragaria x ananassa HOM05D007134 ORTHO05D009004 2.9e-110 402.5 315 63.5
MSTRG.6669 Avicennia marina HOM05D007134 ORTHO05D009004 6.6e-110 401.4 297 63.6
CDE12G0960 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 1.1e-109 400.6 296 64.9
Oeu036071.3 Olea europaea HOM05D007134 ORTHO05D009004 2.5e-109 399.4 330 59.4
Thhalv10016981m.g Eutrema salsugineum HOM05D007134 ORTHO05D009004 3.3e-109 399.1 296 64.2
AUR62007266 Chenopodium quinoa HOM05D007134 ORTHO05D009004 5.6e-109 398.3 306 61.4
Sp4g17520 Schrenkiella parvula HOM05D007134 ORTHO05D009004 1.6e-108 396.7 296 62.8
Rhsim11G0013400 Rhododendron simsii HOM05D007134 ORTHO05D009004 2.1e-108 396.4 431 48.7
Aa31LG9G15330 Aethionema arabicum HOM05D007134 ORTHO05D009004 4.7e-108 395.2 292 63.4
CDE04G0512 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 1.4e-107 393.7 299 64.5
Carub.0004s1701 Capsella rubella HOM05D007134 ORTHO05D009004 1.8e-107 393.3 291 62.5
C03p22750 Brassica napus HOM05D007134 ORTHO05D009004 1.5e-106 390.2 296 61.8
A03p19520 Brassica napus HOM05D007134 ORTHO05D009004 5.7e-106 388.3 296 61.5
BraA03t11205Z Brassica rapa HOM05D007134 ORTHO05D009004 5.7e-106 388.3 296 61.5
Lsat_1_v5_gn_6_64760 Lactuca sativa HOM05D007134 ORTHO05D009004 5.7e-106 388.3 296 61.5
Gohir.A12G209200 Gossypium hirsutum HOM05D007134 ORTHO05D009004 7.5e-106 387.9 263 70.3
CARHR129460 Cardamine hirsuta HOM05D007134 ORTHO05D009004 1.7e-105 386.7 296 60.5
BolC3t14673H Brassica oleracea HOM05D007134 ORTHO05D009004 3.2e-104 382.5 296 61.1
SGA_v2.0_scaffold34G13941 Striga asiatica HOM05D007134 ORTHO05D009004 9.2e-104 380.9 295 61.0
ECA233G0754 Erigeron canadensis HOM05D007134 ORTHO05D009004 1.6e-103 380.2 295 61.7
vmacro00339 Vaccinium macrocarpon HOM05D007134 ORTHO05D009004 1.9e-101 373.2 445 46.7
Hund11255 Selenicereus undatus HOM05D007134 ORTHO05D009004 2.5e-101 372.9 341 56.9
SalBow7G3039 Salvia bowleyana HOM05D007134 ORTHO05D009004 1.6e-100 370.2 300 59.3
ATR0049G037 Amborella trichopoda HOM05D007134 ORTHO05D009004 6.2e-100 368.2 314 56.1
SalBow7G1996 Salvia bowleyana HOM05D007134 ORTHO05D009004 3.1e-99 365.9 310 57.4
Migut.M00165 Erythranthe guttata HOM05D007134 ORTHO05D009004 4.0e-99 365.5 288 60.4
DCAR_032214 Daucus carota HOM05D007134 ORTHO05D009004 2.0e-98 363.2 298 57.4
Nn6g33621 Nelumbo nucifera HOM05D007134 ORTHO05D009004 6.4e-97 358.2 300 57.7
HanXRQChr06g0178411 Helianthus annuus HOM05D007134 ORTHO05D009004 2.4e-96 356.3 301 57.1
Zm00001eb417090 Zea mays HOM05D007134 ORTHO05D009004 7.0e-96 354.8 294 57.8
unitig_749.g14086 Utricularia gibba HOM05D007134 ORTHO05D009004 1.5e-93 347.1 294 57.5
Os06g0110100 Oryza sativa ssp. japonica HOM05D007134 ORTHO05D009004 1.9e-93 346.7 288 59.0
PSO063G6706 Papaver somniferum HOM05D007134 ORTHO05D009004 1.6e-92 343.6 304 53.6
BcaC01g05731 Brassica carinata HOM05D007134 ORTHO05D009004 7.8e-87 324.7 299 53.2
AUR62018733 Chenopodium quinoa HOM05D007134 ORTHO05D009004 2.1e-84 316.6 306 51.6
Medtr4g098510 Medicago truncatula HOM05D007134 ORTHO05D009004 2.9e-81 306.2 240 62.5
AagrBONN_evm.TU.Sc2ySwM_117.2263 Anthoceros agrestis HOM05D007134 ORTHO05D009004 3.6e-76 289.3 308 44.5
Pp3c2_15970 Physcomitrium patens HOM05D007134 ORTHO05D009004 3.2e-72 276.2 293 46.8
Pp3c1_31250 Physcomitrium patens HOM05D007134 ORTHO05D009004 2.4e-64 250.0 299 40.8
VMungo0251G0669 Vigna mungo HOM05D007134 ORTHO05D009004 7.1e-64 248.4 199 59.8
QL12p006104 Quercus lobata HOM05D007134 ORTHO05D009004 2.6e-58 229.9 150 70.7
Pp3c2_10940 Physcomitrium patens HOM05D007134 ORTHO05D009004 4.6e-55 219.2 293 40.3
Pp3c17_17110 Physcomitrium patens HOM05D007134 ORTHO05D009004 5.8e-50 202.2 267 40.1
VMungo0251G0585 Vigna mungo HOM05D007134 ORTHO05D009004 7.4e-45 185.3 124 67.7
SEGI_12545 Sequoiadendron giganteum HOM05D007134 ORTHO05D009004 2.2e-36 157.1 133 55.6
Cpa.g.sc71.65 Carica papaya HOM05D007134 ORTHO05D009004 1.7e-33 147.5 87 69.0
Nn6g33134 Nelumbo nucifera HOM05D007134 ORTHO05D009004 3.5e-10 70.1 70 50.0
Cre09.g398150 Chlamydomonas reinhardtii HOM05D007134 ORTHO05D009004 3.0e-06 57.0 171 26.3


User provided reference genes

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