Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 7.4e-261 903.3 439 100.0
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 4.2e-248 860.9 439 94.3
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 4.7e-247 857.4 438 93.2
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 1.5e-237 825.9 436 89.9
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 1.5e-237 825.9 436 89.9
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 2.0e-237 825.5 441 89.8
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 9.7e-237 823.2 439 88.2
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 2.8e-236 821.6 434 88.7
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 3.7e-236 821.2 451 87.1
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 1.4e-235 819.3 439 87.5
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 7.0e-235 817.0 434 89.4
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 7.0e-235 817.0 434 89.2
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 2.0e-234 815.5 439 87.2
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.7e-233 812.4 434 88.9
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.0e-233 810.8 434 88.7
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 3.6e-231 804.7 439 86.3
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 4.7e-231 804.3 432 86.8
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 4.7e-231 804.3 432 86.8
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 8.0e-231 803.5 439 87.2
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 1.4e-230 802.7 439 85.0
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 2.3e-230 802.0 437 87.2
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 2.3e-230 802.0 437 86.5
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 3.0e-230 801.6 437 87.2
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 5.2e-230 800.8 434 86.6
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 6.8e-230 800.4 437 87.2
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 8.8e-230 800.0 439 86.6
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.2e-229 799.7 433 87.3
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 2.6e-229 798.5 434 85.9
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 4.4e-229 797.7 439 86.1
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 4.4e-229 797.7 434 86.2
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 5.7e-229 797.3 439 86.3
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 2.8e-228 795.0 437 84.9
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 6.3e-228 793.9 437 86.5
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 6.3e-228 793.9 439 84.5
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 4.1e-227 791.2 437 85.4
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 5.4e-227 790.8 439 85.6
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 7.0e-227 790.4 439 84.5
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.6e-226 789.3 432 87.3
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.6e-226 789.3 439 84.5
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 7.7e-226 786.9 434 85.0
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.3e-225 786.2 439 84.3
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 8.6e-225 783.5 439 84.1
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 1.1e-224 783.1 437 83.5
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.9e-224 782.3 433 85.2
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 2.8e-223 778.5 435 85.5
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 4.7e-223 777.7 439 85.4
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 8.0e-223 776.9 439 82.2
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.8e-222 775.8 439 83.1
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 6.8e-222 773.9 437 82.4
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 1.5e-221 772.7 437 83.8
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 7.5e-221 770.4 495 75.4
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 4.1e-219 764.6 439 81.5
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 4.1e-219 764.6 429 83.9
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 1.2e-218 763.1 437 81.2
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 2.7e-218 761.9 436 83.0
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 3.5e-218 761.5 433 82.4
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 3.5e-218 761.5 437 81.7
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 5.9e-218 760.8 437 83.1
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 5.9e-218 760.8 437 83.1
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 7.8e-218 760.4 437 83.1
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.0e-217 760.0 437 82.4
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 1.3e-217 759.6 436 83.3
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 2.3e-217 758.8 439 82.5
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 2.3e-217 758.8 437 82.8
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 2.3e-217 758.8 472 76.9
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 2.9e-217 758.4 436 81.4
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 6.6e-217 757.3 439 80.9
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 1.1e-216 756.5 435 81.4
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.5e-216 756.1 437 82.2
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 1.5e-216 756.1 433 80.8
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 1.9e-216 755.7 428 83.9
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 3.3e-216 755.0 427 83.8
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 3.3e-216 755.0 432 80.6
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 4.3e-216 754.6 427 83.1
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 7.3e-216 753.8 436 82.1
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.6e-215 752.7 439 80.4
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 1.0e-214 750.0 437 81.7
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.8e-214 749.2 445 80.0
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 2.3e-214 748.8 433 81.8
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 2.6e-213 745.3 417 85.1
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 3.4e-213 745.0 442 81.0
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 2.2e-212 742.3 440 79.1
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.9e-211 739.2 508 72.2
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 1.3e-209 733.0 425 82.1
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 1.4e-206 723.0 433 77.6
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 1.4e-206 723.0 523 69.8
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 2.3e-206 722.2 420 81.7
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 1.9e-203 712.6 401 82.8
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 6.0e-202 707.6 436 76.1
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 1.0e-201 706.8 433 76.4
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 1.3e-201 706.4 407 81.1
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 1.5e-200 703.0 391 84.1
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 6.2e-199 697.6 434 76.0
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.0e-197 692.6 427 77.5
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 5.4e-195 684.5 439 73.6
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.6e-194 682.9 433 74.6
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 5.1e-193 677.9 437 74.4
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 8.6e-193 677.2 441 71.9
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 6.2e-191 671.0 433 72.7
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 8.9e-190 667.2 426 73.7
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 9.9e-189 663.7 439 71.3
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 2.7e-186 655.6 427 72.4
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.7e-185 652.9 439 74.0
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 5.6e-184 647.9 340 90.3
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 5.3e-182 641.3 439 67.2
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 4.9e-180 634.8 339 89.7
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 4.2e-179 631.7 427 70.3
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 7.3e-176 620.9 329 87.8
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 9.6e-176 620.5 432 66.9
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.0e-174 615.1 438 66.4
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 4.0e-174 615.1 341 84.5
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.2e-172 609.4 390 75.1
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 2.8e-167 592.4 436 64.0
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 6.9e-166 587.8 354 79.9
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 4.2e-163 578.6 440 67.3
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.2e-162 577.0 443 62.5
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 3.9e-161 572.0 426 62.2
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 5.6e-160 568.2 443 61.2
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.5e-157 560.1 439 62.4
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.5e-157 560.1 294 89.5
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.7e-146 522.7 337 73.0
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.8e-145 520.0 352 70.5
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.0e-141 506.5 432 57.6
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.4e-139 500.4 382 66.5
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 2.0e-128 463.4 432 52.8
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 1.9e-123 446.8 352 65.9
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 2.2e-111 406.8 243 79.8
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 7.0e-110 401.7 223 86.5
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 2.6e-96 356.7 228 74.6
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 4.1e-78 296.2 192 72.9
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 7.8e-77 292.0 157 87.3
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.8e-73 280.8 151 84.1
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 3.0e-68 263.5 197 67.0
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 2.5e-67 260.4 145 84.8
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.6e-64 250.4 134 89.6
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 3.1e-57 226.9 235 54.0
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.3e-51 206.5 112 84.8
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.6e-48 197.2 107 80.4
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 2.1e-42 177.6 137 66.4
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.5e-37 160.2 88 83.0
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 1.8e-36 157.9 204 44.6
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.3e-35 153.7 93 77.4
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 1.1e-33 148.7 165 49.7
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.2e-31 141.0 82 82.9
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.8e-26 124.0 87 69.0
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 2.6e-24 117.5 80 66.2
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 5.0e-23 113.2 257 33.9
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 4.2e-22 110.2 57 80.7
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 5.1e-20 103.2 62 79.0
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 5.1e-20 103.2 72 61.1
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 4.5e-16 90.1 121 45.5
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 4.2e-14 83.6 94 50.0
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 2.1e-13 81.3 38 86.8
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 3.3e-11 73.9 183 30.1
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 2.7e-08 64.3 35 82.9
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 1.0e-07 62.4 69 52.2
Zm00001eb035260 Zea mays HOM05D002051 ORTHO05D002041 5.0e-07 60.1 261 23.4
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 6.5e-07 59.7 35 71.4


User provided reference genes

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