Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 5.5e-65 250.8 122 100.0
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 1.5e-49 199.5 122 78.7
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 1.7e-34 149.4 127 63.8
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 4.3e-33 144.8 127 62.2
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 9.6e-33 143.7 127 62.2
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 1.9e-25 119.4 120 57.5
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 6.2e-24 114.4 120 54.2
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 3.1e-23 112.1 118 55.9
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.2e-22 110.2 85 67.1
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.2e-22 110.2 85 67.1
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 3.4e-22 108.6 109 55.0
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 9.9e-22 107.1 85 65.9
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 6.4e-21 104.4 118 51.7
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 2.4e-20 102.4 110 50.9
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 4.6e-19 98.2 121 49.6
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 6.0e-19 97.8 115 49.6
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 1.7e-18 96.3 123 47.2
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 6.6e-18 94.4 110 49.1
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 6.6e-18 94.4 109 49.5
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 1.5e-17 93.2 128 44.5
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 1.9e-17 92.8 123 48.0
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 5.6e-17 91.3 114 46.5
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 7.3e-17 90.9 134 43.3
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 1.6e-16 89.7 117 44.4
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.6e-16 88.6 128 43.8
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.6e-16 88.6 128 43.8
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 8.1e-16 87.4 114 44.7
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 1.1e-15 87.0 108 50.0
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 1.4e-15 86.7 118 44.1
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 1.4e-15 86.7 115 42.6
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 1.8e-15 86.3 123 44.7
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 1.8e-15 86.3 85 51.8
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 1.8e-15 86.3 131 42.7
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 4.0e-15 85.1 128 42.2
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 9.0e-15 84.0 111 47.7
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 2.0e-14 82.8 110 44.5
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 3.4e-14 82.0 119 43.7
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 4.5e-14 81.6 126 43.7
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 4.5e-14 81.6 113 44.2
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 5.8e-14 81.3 129 45.7
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 5.8e-14 81.3 119 46.2
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 7.6e-14 80.9 83 51.8
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 9.9e-14 80.5 128 44.5
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.7e-13 79.7 113 43.4
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 2.2e-13 79.3 119 41.2
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 2.2e-13 79.3 130 40.0
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 2.2e-13 79.3 119 42.9
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 4.9e-13 78.2 122 43.4
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 8.4e-13 77.4 115 45.2
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 8.4e-13 77.4 116 45.7
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 1.1e-12 77.0 119 44.5
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 1.4e-12 76.6 122 40.2
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 1.4e-12 76.6 117 39.3
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 1.9e-12 76.3 118 44.1
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.4e-12 75.9 110 43.6
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.4e-12 75.9 110 43.6
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 2.4e-12 75.9 119 41.2
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 3.2e-12 75.5 121 42.1
Gohir.A03G000800 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.2e-12 75.5 120 40.8
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 4.2e-12 75.1 117 40.2
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 4.2e-12 75.1 115 45.2
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 5.4e-12 74.7 126 42.1
Haze_08227 Corylus avellana HOM05D006292 ORTHO05D006110 5.4e-12 74.7 113 38.9
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 5.4e-12 74.7 119 41.2
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 5.4e-12 74.7 113 45.1
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 7.1e-12 74.3 117 41.0
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 7.1e-12 74.3 115 41.7
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 9.3e-12 73.9 117 40.2
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 9.3e-12 73.9 117 40.2
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 9.3e-12 73.9 111 40.5
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 1.2e-11 73.6 117 41.0
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 1.6e-11 73.2 118 44.1
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 1.6e-11 73.2 118 44.1
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.6e-11 73.2 115 44.3
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.6e-11 73.2 115 44.3
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 1.6e-11 73.2 126 41.3
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 2.1e-11 72.8 113 46.0
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 2.1e-11 72.8 116 42.2
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 2.1e-11 72.8 110 40.0
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 2.7e-11 72.4 120 40.0
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 2.7e-11 72.4 117 39.3
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 3.5e-11 72.0 109 37.6
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 3.5e-11 72.0 122 40.2
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 3.5e-11 72.0 112 41.1
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 6.0e-11 71.2 120 42.5
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 6.0e-11 71.2 116 41.4
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 6.0e-11 71.2 110 39.1
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 1.3e-10 70.1 115 37.4
Gohir.D03G171400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.3e-10 70.1 125 37.6
Gorai.003G182000 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.3e-10 70.1 125 37.6
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 3.0e-10 68.9 121 43.0
Nn6g33587 Nelumbo nucifera HOM05D006292 ORTHO05D006110 3.0e-10 68.9 70 51.4
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 5.1e-10 68.2 122 41.0
Cfa012441 Carpinus fangiana HOM05D006292 ORTHO05D006110 6.7e-10 67.8 111 40.5
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 8.7e-10 67.4 109 37.6
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 8.7e-10 67.4 115 37.4
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 1.1e-09 67.0 132 39.4
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 1.1e-09 67.0 112 45.5
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 1.9e-09 66.2 120 40.0
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 1.9e-09 66.2 121 38.8
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 1.9e-09 66.2 121 38.8
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 2.5e-09 65.9 121 38.8
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 2.5e-09 65.9 121 38.8
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 2.5e-09 65.9 121 38.8
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 3.3e-09 65.5 109 36.7
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 3.3e-09 65.5 125 40.0
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 4.3e-09 65.1 77 46.8
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 5.6e-09 64.7 115 33.9
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 5.6e-09 64.7 115 33.9
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 7.4e-09 64.3 120 39.2
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 9.6e-09 63.9 112 37.5
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 9.6e-09 63.9 115 33.9
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 9.6e-09 63.9 115 33.9
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 9.6e-09 63.9 115 33.9
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 1.3e-08 63.5 121 38.0
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 1.3e-08 63.5 109 38.5
HPP92_025449 Vanilla planifolia HOM05D006292 ORTHO05D006110 2.1e-08 62.8 127 35.4
Ah.07g200350 Amaranthus hybridus HOM05D006292 ORTHO05D006110 3.7e-08 62.0 121 38.0
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 3.7e-08 62.0 112 41.1
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 4.8e-08 61.6 115 33.0
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 8.1e-08 60.8 121 33.9
VMungo1215G0846 Vigna mungo HOM05D006292 ORTHO05D006110 8.1e-08 60.8 126 35.7
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 1.8e-07 59.7 109 35.8
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 1.8e-07 59.7 109 33.9
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 2.4e-07 59.3 129 36.4
Lalb_Chr09g0334701 Lupinus albus HOM05D006292 ORTHO05D006110 9.0e-07 57.4 109 37.6
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 9.0e-07 57.4 115 37.4
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 9.0e-07 57.4 115 37.4
MSTRG.12158 Avicennia marina HOM05D006292 ORTHO05D006110 2.6e-06 55.8 115 35.7
Gohir.A08G156500 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.6e-06 55.8 121 36.4
Rhsim11G0014800 Rhododendron simsii HOM05D006292 ORTHO05D006110 2.6e-06 55.8 117 35.9
Sabra01G0110900 Salix brachista HOM05D006292 ORTHO05D006110 4.5e-06 55.1 33 75.8
Gohir.D08G177000 Gossypium hirsutum HOM05D006292 ORTHO05D006110 5.8e-06 54.7 121 35.5
Gorai.004G184900 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.0e-05 53.9 121 35.5


User provided reference genes

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