Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 0.0e+00 3160.9 1685 100.0
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 0.0e+00 2725.7 1688 88.8
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 0.0e+00 1595.1 1999 53.6
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 0.0e+00 1533.9 1948 52.7
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 0.0e+00 1275.0 1807 48.5
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 1255.4 1847 45.7
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 1247.3 1837 46.2
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 1245.7 1845 46.3
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 0.0e+00 1242.3 1859 46.2
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 1225.3 1836 46.2
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 5.7e-277 958.7 1880 40.9
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 2.2e-273 946.8 1880 39.8
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 2.4e-259 900.2 1848 41.0
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 1.3e-196 691.8 1839 36.7
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 5.5e-195 686.4 1769 36.7
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 1.6e-186 658.3 1879 34.8
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 5.3e-182 643.3 1810 35.0
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 2.0e-181 641.3 1742 35.5
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 2.3e-169 601.3 2066 32.4
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 6.3e-167 593.2 1912 32.7
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 4.5e-165 587.0 1762 35.0
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.5e-163 580.1 1830 33.5
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 2.1e-162 578.2 1765 31.7
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 4.1e-158 563.9 1928 32.3
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 1.2e-157 562.4 525 71.0
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 3.5e-157 560.8 1716 32.0
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 7.7e-157 559.7 1795 33.9
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 3.6e-154 550.8 1767 32.9
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 5.2e-153 547.0 1787 31.7
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.4e-152 544.3 1941 31.1
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.7e-149 534.6 1863 32.9
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 1.5e-147 528.9 1754 33.3
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.4e-145 522.3 2085 31.3
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.4e-142 510.4 1743 33.2
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 5.4e-142 510.4 1703 33.0
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.5e-141 507.7 1853 32.5
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 1.6e-138 498.8 1935 31.4
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.2e-134 484.6 1465 33.5
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.7e-132 478.8 1319 36.2
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 9.5e-131 473.0 465 72.0
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 2.2e-127 461.8 1811 31.1
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 4.3e-123 447.6 1778 32.1
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 8.1e-122 443.4 1807 30.7
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 6.8e-121 440.3 1722 31.2
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 2.6e-120 438.3 1794 29.0
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 4.4e-120 437.6 1782 31.3
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 1.7e-119 435.6 1803 30.5
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 2.4e-118 431.8 1729 31.6
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 3.5e-117 427.9 1767 30.1
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 7.8e-109 400.2 1736 28.1
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 2.3e-108 398.7 1855 27.9
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 3.9e-108 397.9 1753 29.4
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 9.6e-107 393.3 1718 30.6
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 3.1e-105 388.3 1806 29.1
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 1.4e-102 379.4 1762 30.0
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 1.6e-101 375.9 1779 28.7
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 6.0e-101 374.0 1952 28.8
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 1.7e-100 372.5 1981 28.6
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 3.9e-100 371.3 1828 30.1
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 3.4e-96 358.2 1764 28.3
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.1e-94 353.2 2012 28.3
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 1.4e-94 352.8 1837 27.9
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 1.9e-94 352.4 1796 28.9
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 4.2e-94 351.3 1597 30.9
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 1.6e-93 349.4 921 34.1
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 2.1e-93 349.0 1774 28.6
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 8.1e-90 337.0 1775 27.8
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 9.0e-89 333.6 2022 27.2
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 2.6e-88 332.0 507 57.2
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 1.9e-86 325.9 1652 27.2
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.2e-85 323.2 463 53.8
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 2.3e-84 318.9 885 38.1
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 5.1e-84 317.8 636 45.3
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 4.3e-83 314.7 1865 26.9
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 5.6e-83 314.3 1957 28.2
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 1.6e-82 312.8 833 37.2
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 3.7e-82 311.6 1726 27.9
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.4e-81 309.7 1495 27.2
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 3.8e-79 301.6 1813 26.3
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 8.4e-79 300.4 1840 27.7
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 3.2e-78 298.5 1958 27.0
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 5.5e-78 297.7 1864 26.3
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 6.0e-77 294.3 1820 28.4
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 6.0e-77 294.3 1566 27.3
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 6.7e-76 290.8 1828 26.8
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 1.5e-75 289.7 1982 26.6
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 5.0e-71 274.6 1845 26.7
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 3.6e-69 268.5 1782 27.8
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 8.2e-66 257.3 1743 25.8
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 4.1e-65 255.0 1793 26.8
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 5.3e-65 254.6 681 40.4
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 1.4e-62 246.5 1939 25.8
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 9.4e-62 243.8 1731 26.3
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.2e-61 243.4 1814 25.1
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 2.7e-61 242.3 943 33.6
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 4.6e-61 241.5 1849 25.9
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.0e-60 240.4 880 28.5
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.8e-60 239.6 1818 25.1
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 9.7e-59 233.8 1738 25.9
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.4e-54 219.9 1771 23.8
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.4e-54 219.9 1777 23.7
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 1.9e-54 219.5 1825 23.6
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 2.7e-53 215.7 649 33.6
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 2.0e-51 209.5 1916 25.2
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 4.4e-51 208.4 681 38.2
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 5.3e-49 201.4 1935 25.0
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 1.2e-48 200.3 1924 24.8
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 4.2e-46 191.8 699 33.0
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 1.6e-45 189.9 1789 24.5
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 1.5e-43 183.3 194 56.2
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 4.4e-43 181.8 1994 25.1
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 5.3e-41 174.9 1760 24.7
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 3.5e-40 172.2 292 41.8
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 4.7e-37 161.8 177 49.2
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 7.5e-35 154.5 820 33.0
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.1e-33 150.6 315 34.9
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 2.4e-33 149.4 256 61.3
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.7e-32 146.0 705 27.2
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 2.3e-23 116.3 417 31.2
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.8e-20 106.7 394 31.5
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 5.2e-20 105.1 265 49.8
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 4.4e-19 102.1 119 45.4
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 7.0e-17 94.7 414 26.6
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 3.5e-16 92.4 384 27.1
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 8.6e-15 87.8 89 51.7
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 4.3e-14 85.5 975 22.4
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 4.3e-14 85.5 1953 22.8
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 5.6e-14 85.1 177 38.4
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 2.8e-13 82.8 337 28.2
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 1.4e-12 80.5 1995 22.7
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 7.5e-11 74.7 49 67.3
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 3.7e-10 72.4 172 30.8
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 3.7e-10 72.4 626 24.3
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.9e-09 70.1 254 31.9
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.9e-09 70.1 143 39.2
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 2.4e-09 69.7 233 32.2
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.4e-09 68.6 68 55.9
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 1.6e-08 67.0 89 37.1
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 1.7e-07 63.5 61 49.2
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 3.0e-07 62.8 59 62.7
PSO063G5346 Papaver somniferum HOM05D004836 ORTHO05D005150 3.9e-07 62.4 176 34.1
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 3.9e-07 62.4 60 55.0
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 3.3e-06 59.3 87 49.4
Psat2g132120 Pisum sativum HOM05D004836 ORTHO05D005150 7.3e-06 58.2 152 32.2


User provided reference genes

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