Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 2.2e-89 332.8 238 100.0
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 1.8e-51 206.8 163 71.8
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.0e-30 137.9 154 55.8
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 1.3e-30 137.5 191 47.6
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 8.7e-30 134.8 154 55.8
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 5.6e-29 132.1 190 47.4
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.6e-28 130.6 202 45.0
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.1e-28 130.2 154 54.5
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.1e-28 130.2 154 54.5
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 8.1e-28 128.3 189 42.3
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 1.8e-27 127.1 202 43.6
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 6.9e-27 125.2 154 53.2
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 7.6e-26 121.7 187 43.3
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 7.6e-26 121.7 192 41.1
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 1.3e-25 120.9 221 38.5
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 1.3e-25 120.9 199 40.7
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.7e-25 120.6 186 42.5
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 4.9e-25 119.0 185 41.6
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 2.4e-24 116.7 171 44.4
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 2.4e-24 116.7 171 44.4
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 2.4e-24 116.7 185 41.6
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 5.4e-24 115.5 216 38.4
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 5.4e-24 115.5 202 38.6
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 7.1e-24 115.2 193 40.4
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.2e-23 114.4 177 44.1
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 1.0e-22 111.3 207 38.6
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 1.0e-22 111.3 174 43.1
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 2.3e-22 110.2 200 36.5
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 2.3e-22 110.2 201 36.3
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 2.3e-22 110.2 189 40.7
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 6.6e-22 108.6 189 39.2
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.5e-21 107.5 182 40.1
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 1.5e-21 107.5 162 46.9
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 2.5e-21 106.7 190 40.5
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 2.5e-21 106.7 223 35.9
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 3.3e-21 106.3 172 42.4
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 5.6e-21 105.5 171 38.6
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 7.3e-21 105.1 165 45.5
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 9.6e-21 104.8 187 41.2
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 1.3e-20 104.4 202 37.1
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.4e-19 100.9 227 36.6
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 5.3e-19 99.0 189 38.1
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 6.9e-19 98.6 116 50.9
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 1.2e-18 97.8 206 37.4
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 1.5e-18 97.4 228 34.2
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 1.5e-18 97.4 206 36.4
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 2.6e-18 96.7 209 36.4
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 2.6e-18 96.7 163 41.1
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 3.4e-18 96.3 209 37.8
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 5.8e-18 95.5 205 38.0
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 5.8e-18 95.5 197 37.1
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 7.6e-18 95.1 186 41.4
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 9.9e-18 94.7 172 39.5
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 9.9e-18 94.7 212 38.7
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 2.2e-17 93.6 208 39.9
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 2.9e-17 93.2 192 36.5
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 3.8e-17 92.8 192 37.0
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 1.1e-16 91.3 182 38.5
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 1.1e-16 91.3 184 39.7
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 1.9e-16 90.5 182 40.7
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 4.2e-16 89.4 200 35.5
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 4.2e-16 89.4 203 36.5
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 5.4e-16 89.0 211 37.0
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 7.1e-16 88.6 210 36.7
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.6e-15 87.4 203 36.9
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 1.6e-15 87.4 184 37.5
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 2.1e-15 87.0 180 38.3
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 2.1e-15 87.0 202 36.1
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 4.6e-15 85.9 204 33.3
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 7.9e-15 85.1 202 33.7
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 1.3e-14 84.3 216 31.9
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 2.3e-14 83.6 198 36.4
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 3.9e-14 82.8 216 31.5
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 6.7e-14 82.0 188 34.0
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 1.1e-13 81.3 192 37.0
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 1.5e-13 80.9 161 34.2
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 1.5e-13 80.9 165 37.0
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 1.5e-13 80.9 186 33.3
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 5.6e-13 79.0 189 34.9
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 5.6e-13 79.0 157 35.7
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 9.6e-13 78.2 159 35.2
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 1.6e-12 77.4 183 32.2
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.1e-12 77.0 164 35.4
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 2.1e-12 77.0 188 33.0
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 2.8e-12 76.6 191 34.0
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 2.8e-12 76.6 183 32.2
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 2.8e-12 76.6 75 50.7
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 2.8e-12 76.6 55 63.6
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 8.1e-12 75.1 163 34.4
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 8.1e-12 75.1 67 58.2
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 8.1e-12 75.1 96 47.9
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 1.1e-11 74.7 193 33.2
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 1.1e-11 74.7 183 31.1
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 1.8e-11 73.9 165 33.9
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 1.8e-11 73.9 165 33.9
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.8e-11 73.9 205 29.8
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.8e-11 73.9 206 31.1
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 2.4e-11 73.6 184 32.6
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 3.1e-11 73.2 188 34.6
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 3.1e-11 73.2 208 29.3
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 9.0e-11 71.6 162 32.1
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 9.0e-11 71.6 176 35.2
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 2.0e-10 70.5 196 32.1
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 2.0e-10 70.5 53 66.0
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 7.6e-10 68.6 139 34.5
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 1.0e-09 68.2 57 56.1
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 1.3e-09 67.8 173 32.9
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 1.7e-09 67.4 177 30.5
AUR62018697 Chenopodium quinoa HOM05D006310 ORTHO05D007768 1.7e-09 67.4 39 82.1
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 2.2e-09 67.0 76 47.4
Zm00001eb024820 Zea mays HOM05D006310 ORTHO05D007768 3.8e-09 66.2 40 65.0
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 4.9e-09 65.9 40 70.0
SEGI_05294 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 6.4e-09 65.5 67 49.3
Nn2g12150 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.4e-08 64.3 38 78.9
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 2.5e-08 63.5 64 51.6
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 5.5e-08 62.4 65 46.2
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 7.1e-08 62.0 168 33.3
SEGI_10096 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 3.5e-07 59.7 57 52.6
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 4.6e-07 59.3 56 53.6
SEGI_00832 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 4.6e-07 59.3 37 64.9
SEGI_20120 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 6.0e-07 58.9 40 62.5
SEGI_41011 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 6.0e-07 58.9 39 69.2
Os10g0576600 Oryza sativa ssp. japonica HOM05D006310 ORTHO05D007768 7.9e-07 58.5 39 56.4
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 7.9e-07 58.5 70 44.3
SEGI_10481 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 1.0e-06 58.2 39 64.1
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 3.0e-06 56.6 68 42.6
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 3.0e-06 56.6 52 48.1
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.0e-06 56.6 68 41.2
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 3.0e-06 56.6 52 51.9
SEGI_04018 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 3.9e-06 56.2 34 67.6
SEGI_34370 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 3.9e-06 56.2 34 67.6
Medtr4g010250 Medicago truncatula HOM05D001903 ORTHO05D001847 8.7e-06 55.1 46 60.9
Nn4g23899 Nelumbo nucifera HOM05D006310 ORTHO05D007768 8.7e-06 55.1 39 71.8
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 8.7e-06 55.1 66 47.0
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 8.7e-06 55.1 189 33.3
SEGI_05061 Sequoiadendron giganteum HOM05D006310 ORTHO05D007768 8.7e-06 55.1 155 30.3


User provided reference genes

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