Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G030900 Prunus persica HOM05D007450 ORTHO05D009377 6.7e-57 223.8 112 100.0
FAN08G0787 Fragaria x ananassa HOM05D007450 ORTHO05D009377 9.7e-40 166.8 113 77.9
FvH4_5g22750 Fragaria vesca HOM05D007450 ORTHO05D009377 1.3e-39 166.4 113 77.9
FAN18G1197 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.3e-39 166.4 113 77.9
FAN18G1518 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.3e-39 166.4 113 77.9
MD06G1038000 Malus domestica HOM05D007450 ORTHO05D009377 4.8e-39 164.5 112 75.0
FAN04G2147 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.1e-38 163.3 113 77.0
RcHm_v2.0_Chr7g0211351 Rosa chinensis HOM05D007450 ORTHO05D009377 2.4e-38 162.2 113 77.0
FAN13G0277 Fragaria x ananassa HOM05D007450 ORTHO05D009377 3.1e-38 161.8 113 76.1
FAN13G1033 Fragaria x ananassa HOM05D007450 ORTHO05D009377 3.1e-38 161.8 113 76.1
Psat2g138000 Pisum sativum HOM05D007450 ORTHO05D009377 9.7e-32 140.2 113 67.3
Medtr5g029660 Medicago truncatula HOM05D007450 ORTHO05D009377 2.2e-31 139.0 113 66.4
CiPaw.11G096800 Carya illinoinensis HOM05D007450 ORTHO05D009377 4.8e-31 137.9 112 66.1
Gohir.A12G207000 Gossypium hirsutum HOM05D007450 ORTHO05D009377 4.1e-30 134.8 112 68.8
Cfa012487 Carpinus fangiana HOM05D007450 ORTHO05D009377 5.3e-30 134.4 112 67.0
CANSAT21G1074 Cannabis sativa HOM05D007450 ORTHO05D009377 9.1e-30 133.7 112 67.9
Manes.14G162800 Manihot esculenta HOM05D007450 ORTHO05D009377 9.1e-30 133.7 109 68.8
Lj2g0017142 Lotus japonicus HOM05D007450 ORTHO05D009377 5.9e-29 131.0 114 64.0
Potri.001G138700 Populus trichocarpa HOM05D007450 ORTHO05D009377 2.9e-28 128.6 112 66.1
Glyma.01G015700 Glycine max HOM05D007450 ORTHO05D009377 5.0e-28 127.9 112 60.7
Dinv25243 Davidia involucrata HOM05D007450 ORTHO05D009377 1.4e-27 126.3 110 63.6
PGR031G1038 Punica granatum HOM05D007450 ORTHO05D009377 1.4e-27 126.3 112 63.4
Ca_08150_v3 Cicer arietinum L. HOM05D007450 ORTHO05D009377 3.2e-27 125.2 113 61.9
Glyma.09G206700 Glycine max HOM05D007450 ORTHO05D009377 3.2e-27 125.2 112 58.9
CSS0005314 Camellia sinensis var. sinensis HOM05D007450 ORTHO05D009377 7.2e-27 124.0 110 62.7
Gohir.D12G209400 Gossypium hirsutum HOM05D007450 ORTHO05D009377 9.4e-27 123.6 112 64.3
Duzib205G1651 Durio zibethinus HOM05D007450 ORTHO05D009377 1.2e-26 123.2 112 63.4
TPR.G8094 Trifolium pratense HOM05D007450 ORTHO05D009377 1.0e-25 120.2 116 62.1
TAR629G3037 Trochodendron aralioides HOM05D007450 ORTHO05D009377 1.4e-25 119.8 115 59.1
Rhsim07G0130700 Rhododendron simsii HOM05D007450 ORTHO05D009377 2.3e-25 119.0 110 59.1
Atru.chr6.1639 Acer truncatum HOM05D007450 ORTHO05D009377 3.9e-25 118.2 112 57.1
Sed0022287 Sechium edule HOM05D007450 ORTHO05D009377 3.9e-25 118.2 105 61.9
Actinidia14787 Actinidia chinensis HOM05D007450 ORTHO05D009377 1.1e-24 116.7 110 61.8
Actinidia09178 Actinidia chinensis HOM05D007450 ORTHO05D009377 1.5e-24 116.3 107 61.7
THA.LOC104808475 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 5.7e-24 114.4 108 56.5
Cc08_g03220 Coffea canephora HOM05D007450 ORTHO05D009377 9.7e-24 113.6 90 68.9
Dinv28985 Davidia involucrata HOM05D007450 ORTHO05D009377 1.7e-23 112.8 90 68.9
DCAR_008242 Daucus carota HOM05D007450 ORTHO05D009377 2.2e-23 112.5 90 66.7
MELO3C003430.2 Cucumis melo HOM05D007450 ORTHO05D009377 4.8e-23 111.3 101 60.4
Phvul.002G138300 Phaseolus vulgaris HOM05D007450 ORTHO05D009377 8.2e-23 110.5 112 53.6
THA.LOC104798592 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 1.1e-22 110.2 108 54.6
QL12p004405 Quercus lobata HOM05D007450 ORTHO05D009377 2.4e-22 109.0 101 66.3
Sabra01G0107700 Salix brachista HOM05D007450 ORTHO05D009377 2.4e-22 109.0 92 68.5
GSVIVG01013568001 Vitis vinifera HOM05D007450 ORTHO05D009377 2.4e-22 109.0 93 63.4
Ciclev10018330m.g Citrus clementina HOM05D007450 ORTHO05D009377 5.3e-22 107.8 101 59.4
Peaxi162Scf00170g00915 Petunia axillaris HOM05D007450 ORTHO05D009377 5.3e-22 107.8 110 55.5
Sed0003049 Sechium edule HOM05D007450 ORTHO05D009377 5.3e-22 107.8 103 57.3
Nitab4.5_0000353g0070 Nicotiana tabacum HOM05D007450 ORTHO05D009377 7.0e-22 107.5 99 60.6
Thecc.03G307400 Theobroma cacao HOM05D007450 ORTHO05D009377 9.1e-22 107.1 90 67.8
Lalb_Chr05g0215841 Lupinus albus HOM05D007450 ORTHO05D009377 1.6e-21 106.3 88 63.6
ClCG09G011730 Citrullus lanatus HOM05D007450 ORTHO05D009377 2.0e-21 105.9 92 59.8
Solyc08g076580.3 Solanum lycopersicum HOM05D007450 ORTHO05D009377 2.0e-21 105.9 101 59.4
ECA233G1068 Erigeron canadensis HOM05D007450 ORTHO05D009377 3.5e-21 105.1 98 58.2
Peaxi162Scf00170g01010 Petunia axillaris HOM05D007450 ORTHO05D009377 3.5e-21 105.1 108 55.6
Thhalv10009436m.g Eutrema salsugineum HOM05D007450 ORTHO05D009377 5.9e-21 104.4 100 55.0
Sp1g27980 Schrenkiella parvula HOM05D007450 ORTHO05D009377 5.9e-21 104.4 100 56.0
Peaxi162Scf00879g00221 Petunia axillaris HOM05D007450 ORTHO05D009377 7.7e-21 104.0 110 54.5
Sopen08g025140 Solanum pennellii HOM05D007450 ORTHO05D009377 1.0e-20 103.6 100 58.0
CAN.G298.58 Capsicum annuum HOM05D007450 ORTHO05D009377 1.3e-20 103.2 101 58.4
vmacro14189 Vaccinium macrocarpon HOM05D007450 ORTHO05D009377 2.2e-20 102.4 90 63.3
AT1G32310 Arabidopsis thaliana HOM05D007450 ORTHO05D009377 5.0e-20 101.3 101 53.5
Lsat_1_v5_gn_6_1640 Lactuca sativa HOM05D007450 ORTHO05D009377 5.0e-20 101.3 98 56.1
Nitab4.5_0000685g0040 Nicotiana tabacum HOM05D007450 ORTHO05D009377 6.5e-20 100.9 90 61.1
BcaC05g27880 Brassica carinata HOM05D007450 ORTHO05D009377 8.5e-20 100.5 100 53.0
Carub.0001s3064 Capsella rubella HOM05D007450 ORTHO05D009377 8.5e-20 100.5 97 55.7
Haze_08178 Corylus avellana HOM05D007450 ORTHO05D009377 1.5e-19 99.8 172 43.0
PGSC0003DMG400014800 Solanum tuberosum HOM05D007450 ORTHO05D009377 1.5e-19 99.8 101 55.4
A05p25040 Brassica napus HOM05D007450 ORTHO05D009377 1.9e-19 99.4 100 53.0
Gorai.008G225000 Gossypium raimondii HOM05D007450 ORTHO05D009377 5.5e-19 97.8 90 65.6
HanXRQChr13g0395471 Helianthus annuus HOM05D007450 ORTHO05D009377 5.5e-19 97.8 98 54.1
CARHR031660 Cardamine hirsuta HOM05D007450 ORTHO05D009377 9.4e-19 97.1 100 52.0
C05p38880 Brassica napus HOM05D007450 ORTHO05D009377 2.1e-18 95.9 101 52.5
BolC5t32629H Brassica oleracea HOM05D007450 ORTHO05D009377 2.1e-18 95.9 101 52.5
Eucgr.E00251 Eucalyptus grandis HOM05D007450 ORTHO05D009377 2.7e-18 95.5 105 51.4
VMungo1215G2816 Vigna mungo HOM05D007450 ORTHO05D009377 2.7e-18 95.5 91 58.2
BcaB03g13745 Brassica carinata HOM05D007450 ORTHO05D009377 3.6e-18 95.1 100 51.0
Aa31LG2G13720 Aethionema arabicum HOM05D007450 ORTHO05D009377 4.7e-18 94.7 100 51.0
arahy.Tifrunner.gnm1.ann1.UE78BX Arachis hypogaea HOM05D007450 ORTHO05D009377 6.1e-18 94.4 93 55.9
arahy.Tifrunner.gnm1.ann1.XXZI65 Arachis hypogaea HOM05D007450 ORTHO05D009377 6.1e-18 94.4 93 55.9
Sc01g0007300 Simmondsia chinensis HOM05D007450 ORTHO05D009377 8.0e-18 94.0 134 43.3
BraA05t21386Z Brassica rapa HOM05D007450 ORTHO05D009377 2.3e-17 92.4 97 51.5
Potri.003G095100 Populus trichocarpa HOM05D007450 ORTHO05D009377 3.0e-17 92.0 92 57.6
MSTRG.1994 Avicennia marina HOM05D007450 ORTHO05D009377 8.8e-17 90.5 112 43.8
PSO063G4138 Papaver somniferum HOM05D007450 ORTHO05D009377 3.3e-16 88.6 115 46.1
PSO782G2764 Papaver somniferum HOM05D007450 ORTHO05D009377 7.5e-16 87.4 115 45.2
Hund11210 Selenicereus undatus HOM05D007450 ORTHO05D009377 1.4e-14 83.2 99 51.5
Lalb_Chr16g0381181 Lupinus albus HOM05D007450 ORTHO05D009377 1.8e-14 82.8 93 54.8
Aqoxy3G02217 Aquilegia oxysepala HOM05D007450 ORTHO05D009377 2.4e-14 82.4 121 43.0
HPP92_001521 Vanilla planifolia HOM05D007450 ORTHO05D009377 2.4e-14 82.4 98 52.0
EL10Ac5g12043 Beta vulgaris HOM05D007450 ORTHO05D009377 2.0e-13 79.3 70 60.0
ATR0829G039 Amborella trichopoda HOM05D007450 ORTHO05D009377 3.5e-13 78.6 90 52.2
COL.COLO4_16968 Corchorus olitorius HOM05D007450 ORTHO05D009377 5.9e-13 77.8 52 71.2
AUR62018673 Chenopodium quinoa HOM05D007450 ORTHO05D009377 1.7e-12 76.3 89 50.6
SHI36446 Sapria himalayana HOM05D007450 ORTHO05D009377 1.9e-11 72.8 55 63.6
CDE11G0326 Ceratophyllum demersum HOM05D007450 ORTHO05D009377 3.2e-11 72.0 87 50.6
SalBow1G6923 Salvia bowleyana HOM05D007450 ORTHO05D009377 7.2e-11 70.9 53 60.4
Os10g0575950 Oryza sativa ssp. japonica HOM05D007450 ORTHO05D009377 1.2e-10 70.1 97 41.2
Migut.E00781 Erythranthe guttata HOM05D007450 ORTHO05D009377 2.1e-10 69.3 60 55.0
Zm00001eb024740 Zea mays HOM05D007450 ORTHO05D009377 1.0e-09 67.0 72 48.6
CsaV3_3G048930 Cucumis sativus L. HOM05D007450 ORTHO05D009377 1.3e-07 60.1 40 65.0
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 1.4e-06 56.6 72 47.2
CARHR033090 Cardamine hirsuta HOM05D007450 ORTHO05D009377 3.1e-06 55.5 45 57.8


User provided reference genes

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