Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 1.3e-107 393.3 229 100.0
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 2.5e-87 325.9 229 84.7
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 2.2e-78 296.2 193 80.8
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 2.4e-77 292.7 231 74.0
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 2.9e-75 285.8 193 74.1
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 3.8e-75 285.4 173 80.3
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 1.4e-74 283.5 179 79.9
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.4e-74 283.5 179 79.9
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 2.1e-73 279.6 193 76.7
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 4.7e-73 278.5 173 79.8
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 4.7e-73 278.5 173 79.8
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 2.3e-72 276.2 166 81.9
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 2.3e-72 276.2 180 77.2
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 5.2e-72 275.0 171 78.9
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 5.2e-72 275.0 198 75.3
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 1.5e-71 273.5 180 74.4
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 5.7e-71 271.6 193 69.9
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 7.4e-71 271.2 165 79.4
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 9.7e-71 270.8 168 78.0
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 1.7e-70 270.0 177 76.8
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 2.2e-70 269.6 195 75.4
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 3.7e-70 268.9 177 78.0
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 3.7e-70 268.9 192 75.0
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 3.7e-70 268.9 180 75.6
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 8.2e-70 267.7 180 75.6
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.1e-69 267.3 184 76.1
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 1.1e-69 267.3 195 73.8
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 1.4e-69 266.9 183 74.9
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 1.4e-69 266.9 226 75.2
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 3.1e-69 265.8 167 78.4
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 4.1e-69 265.4 195 73.3
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 5.3e-69 265.0 195 73.8
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 5.3e-69 265.0 182 73.6
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 9.1e-69 264.2 180 73.9
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 1.2e-68 263.8 168 77.4
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 2.6e-68 262.7 180 72.2
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 5.9e-68 261.5 191 69.1
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 1.0e-67 260.8 194 71.6
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 1.0e-67 260.8 173 74.0
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 1.3e-67 260.4 180 71.1
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 1.3e-67 260.4 180 71.1
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 2.2e-67 259.6 177 71.2
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 3.8e-67 258.8 193 69.4
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 3.8e-67 258.8 194 69.6
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 5.0e-67 258.5 227 68.7
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 8.5e-67 257.7 229 67.7
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 1.5e-66 256.9 172 72.7
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 1.5e-66 256.9 235 66.4
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.9e-66 256.5 227 72.7
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 3.2e-66 255.8 173 73.4
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 7.2e-66 254.6 150 81.3
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 9.4e-66 254.2 195 71.8
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 1.2e-65 253.8 134 91.8
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 1.6e-65 253.4 196 70.4
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 6.1e-65 251.5 179 74.9
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 6.1e-65 251.5 209 63.2
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 8.0e-65 251.1 180 71.7
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 1.0e-64 250.8 237 66.7
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 2.3e-64 249.6 176 74.4
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 2.3e-64 249.6 173 70.5
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 2.0e-63 246.5 172 71.5
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 2.0e-63 246.5 161 73.9
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 4.4e-63 245.4 181 69.1
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 9.7e-63 244.2 193 68.4
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 1.3e-62 243.8 162 75.3
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 1.7e-62 243.4 172 71.5
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 1.7e-62 243.4 165 73.9
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 1.4e-61 240.4 163 74.2
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 2.4e-61 239.6 172 70.9
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 3.1e-61 239.2 182 63.7
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 3.1e-61 239.2 182 63.7
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 4.1e-61 238.8 186 65.1
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 1.2e-60 237.3 155 75.5
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 3.5e-60 235.7 258 56.2
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 7.7e-60 234.6 136 84.6
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 1.0e-59 234.2 168 71.4
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 1.3e-59 233.8 182 62.6
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 2.9e-59 232.6 194 65.5
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 2.9e-59 232.6 187 63.1
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 1.1e-58 230.7 165 71.5
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 1.5e-58 230.3 194 59.8
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 1.5e-58 230.3 194 59.8
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 2.5e-58 229.6 195 59.0
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 2.5e-58 229.6 195 59.0
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 2.5e-58 229.6 193 60.1
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 4.2e-58 228.8 226 62.4
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 5.2e-56 221.9 275 55.6
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 3.7e-54 215.7 158 67.7
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 3.1e-53 212.6 190 59.5
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 6.8e-48 194.9 165 62.4
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 6.3e-46 188.3 132 71.2
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 5.4e-45 185.3 162 58.0
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 3.5e-44 182.6 178 54.5
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 5.9e-44 181.8 192 51.0
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 1.0e-43 181.0 185 67.0
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 2.8e-41 172.9 91 86.8
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 1.0e-40 171.0 152 65.1
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 2.0e-39 166.8 136 63.2
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 2.7e-36 156.4 180 52.2
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 2.3e-32 143.3 201 43.3
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 1.5e-31 140.6 133 62.4
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 1.5e-31 140.6 133 62.4
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 7.1e-29 131.7 131 55.0
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.9e-26 123.6 102 69.6
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 1.2e-25 120.9 147 46.9
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 4.9e-22 109.0 113 54.9
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 4.1e-21 105.9 65 86.2
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 5.6e-18 95.5 97 55.7
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 6.2e-17 92.0 108 43.5
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 4.2e-13 79.3 55 70.9
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 7.3e-10 68.6 37 91.9
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 9.6e-10 68.2 31 87.1
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 4.8e-09 65.9 88 50.0
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 8.1e-09 65.1 31 83.9
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 2.6e-07 60.1 59 54.2
EL10Ac8g19171 Beta vulgaris HOM05D006601 ORTHO05D008281 2.2e-06 57.0 25 88.0


User provided reference genes

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