Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G028300 Prunus persica HOM05D006137 ORTHO05D007697 1.8e-201 705.7 350 100.0
RcHm_v2.0_Chr7g0211741 Rosa chinensis HOM05D006137 ORTHO05D007697 8.0e-141 504.2 372 69.4
MD06G1026400 Malus domestica HOM05D006137 ORTHO05D007697 2.2e-138 496.1 395 68.4
FAN08G1929 Fragaria x ananassa HOM05D006137 ORTHO05D007697 4.2e-134 481.9 369 68.8
FAN04G0555 Fragaria x ananassa HOM05D006137 ORTHO05D007697 6.1e-133 478.0 369 68.0
FvH4_5g23010 Fragaria vesca HOM05D006137 ORTHO05D007697 6.8e-132 474.6 368 67.9
FAN13G2862 Fragaria x ananassa HOM05D006137 ORTHO05D007697 5.4e-129 464.9 386 65.3
FAN18G2637 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.0e-127 460.7 408 62.5
FvH4_2g06760 Fragaria vesca HOM05D006137 ORTHO05D007697 2.3e-127 459.5 369 66.9
FAN18G2668 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.6e-123 446.0 304 74.0
CiPaw.11G098100 Carya illinoinensis HOM05D006137 ORTHO05D007697 4.9e-122 441.8 372 65.3
Dinv25255 Davidia involucrata HOM05D006137 ORTHO05D007697 7.8e-120 434.5 376 63.0
Ciclev10001458m.g Citrus clementina HOM05D006137 ORTHO05D007697 6.6e-119 431.4 381 61.2
TWI15G1160 Tripterygium wilfordii HOM05D006137 ORTHO05D007697 1.2e-117 427.2 308 70.8
Potri.003G096600 Populus trichocarpa HOM05D006137 ORTHO05D007697 6.2e-117 424.9 386 61.9
Gohir.D12G208800 Gossypium hirsutum HOM05D006137 ORTHO05D007697 1.4e-116 423.7 306 69.6
Gohir.A12G206400 Gossypium hirsutum HOM05D006137 ORTHO05D007697 8.9e-116 421.0 306 69.3
TAR629G2895 Trochodendron aralioides HOM05D006137 ORTHO05D007697 1.2e-115 420.6 376 61.2
Gorai.008G224300 Gossypium raimondii HOM05D006137 ORTHO05D007697 2.0e-115 419.9 306 69.0
GSVIVG01013108001 Vitis vinifera HOM05D006137 ORTHO05D007697 7.5e-115 417.9 383 59.5
CANSAT21G0809 Cannabis sativa HOM05D006137 ORTHO05D007697 2.2e-114 416.4 387 58.4
CSS0021967 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 3.7e-114 415.6 393 57.8
PGR042G0393 Punica granatum HOM05D006137 ORTHO05D007697 3.7e-114 415.6 315 68.3
Duzib068G1414 Durio zibethinus HOM05D006137 ORTHO05D007697 1.9e-113 413.3 359 61.6
Atru.chr6.1520 Acer truncatum HOM05D006137 ORTHO05D007697 7.0e-113 411.4 308 67.5
Thecc.03G309800 Theobroma cacao HOM05D006137 ORTHO05D007697 9.2e-113 411.0 367 59.9
CANSAT21G0548 Cannabis sativa HOM05D006137 ORTHO05D007697 1.2e-112 410.6 389 58.6
Hma1.2p1_1027F.1_g249480 Hydrangea macrophylla HOM05D006137 ORTHO05D007697 2.1e-112 409.8 393 59.0
MELO3C013825.2 Cucumis melo HOM05D006137 ORTHO05D007697 4.6e-112 408.7 391 57.5
COL.COLO4_16947 Corchorus olitorius HOM05D006137 ORTHO05D007697 1.3e-111 407.1 340 62.9
CSS0050317 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 2.3e-111 406.4 303 67.3
Lj3g0008594 Lotus japonicus HOM05D006137 ORTHO05D007697 2.3e-111 406.4 383 57.7
CsaV3_3G001380 Cucumis sativus L. HOM05D006137 ORTHO05D007697 3.3e-110 402.5 387 57.9
Lalb_Chr09g0325501 Lupinus albus HOM05D006137 ORTHO05D007697 1.2e-109 400.6 382 57.3
Sabra03G0065200 Salix brachista HOM05D006137 ORTHO05D007697 1.2e-109 400.6 296 68.9
Glyma.01G014900 Glycine max HOM05D006137 ORTHO05D007697 4.7e-109 398.7 308 65.6
Medtr5g029550 Medicago truncatula HOM05D006137 ORTHO05D007697 4.7e-109 398.7 307 65.5
VMungo1215G0535 Vigna mungo HOM05D006137 ORTHO05D007697 8.1e-109 397.9 318 64.2
TPR.G19427 Trifolium pratense HOM05D006137 ORTHO05D007697 1.8e-108 396.7 306 64.7
arahy.Tifrunner.gnm1.ann1.3JZK2J Arachis hypogaea HOM05D006137 ORTHO05D007697 8.9e-108 394.4 312 64.1
arahy.Tifrunner.gnm1.ann1.J91B8N Arachis hypogaea HOM05D006137 ORTHO05D007697 8.9e-108 394.4 312 64.1
Phvul.002G137400 Phaseolus vulgaris HOM05D006137 ORTHO05D007697 8.9e-108 394.4 347 59.7
Rhsim11G0021000 Rhododendron simsii HOM05D006137 ORTHO05D007697 1.5e-107 393.7 396 56.1
Aqoxy2G03876 Aquilegia oxysepala HOM05D006137 ORTHO05D007697 2.6e-107 392.9 319 62.1
FAN24G0436 Fragaria x ananassa HOM05D006137 ORTHO05D007697 6.4e-106 388.3 342 62.9
Nn3g19394 Nelumbo nucifera HOM05D006137 ORTHO05D007697 1.9e-105 386.7 366 58.2
Ah.09g233490 Amaranthus hybridus HOM05D006137 ORTHO05D007697 6.0e-104 381.7 362 56.4
ClCG10G001310 Citrullus lanatus HOM05D006137 ORTHO05D007697 7.8e-104 381.3 442 50.5
Sed0022354 Sechium edule HOM05D006137 ORTHO05D007697 7.8e-104 381.3 377 57.0
BcaB06g28845 Brassica carinata HOM05D006137 ORTHO05D007697 3.9e-103 379.0 320 60.9
AT2G35500 Arabidopsis thaliana HOM05D006137 ORTHO05D007697 8.6e-103 377.9 319 61.4
A04p26930 Brassica napus HOM05D006137 ORTHO05D007697 1.5e-102 377.1 320 60.3
C04p64320 Brassica napus HOM05D006137 ORTHO05D007697 1.5e-102 377.1 320 60.3
BraA04t18192Z Brassica rapa HOM05D006137 ORTHO05D007697 1.5e-102 377.1 320 60.6
Psat2g138120 Pisum sativum HOM05D006137 ORTHO05D007697 1.9e-102 376.7 308 63.0
Thhalv10016768m.g Eutrema salsugineum HOM05D006137 ORTHO05D007697 3.3e-102 375.9 323 61.0
BolC4t27919H Brassica oleracea HOM05D006137 ORTHO05D007697 4.3e-102 375.6 361 55.4
AL4G31550 Arabidopsis lyrata HOM05D006137 ORTHO05D007697 7.3e-102 374.8 330 59.1
Carub.0004s1719 Capsella rubella HOM05D006137 ORTHO05D007697 1.2e-101 374.0 319 60.8
DCAR_008226 Daucus carota HOM05D006137 ORTHO05D007697 3.6e-101 372.5 301 63.5
PSO782G3150 Papaver somniferum HOM05D006137 ORTHO05D007697 8.1e-101 371.3 316 60.1
Cc08_g03270 Coffea canephora HOM05D006137 ORTHO05D007697 1.1e-100 370.9 339 57.5
Nitab4.5_0003416g0030 Nicotiana tabacum HOM05D006137 ORTHO05D007697 1.4e-100 370.5 331 58.3
CARHR129650 Cardamine hirsuta HOM05D006137 ORTHO05D007697 2.4e-100 369.8 318 60.4
EL10Ac2g03238 Beta vulgaris HOM05D006137 ORTHO05D007697 6.8e-100 368.2 336 59.2
BcaC02g07708 Brassica carinata HOM05D006137 ORTHO05D007697 8.9e-100 367.9 304 62.2
Sp4g17720 Schrenkiella parvula HOM05D006137 ORTHO05D007697 1.2e-99 367.5 319 59.6
CDE06G2536 Ceratophyllum demersum HOM05D006137 ORTHO05D007697 3.4e-99 365.9 353 55.8
ECA233G6209 Erigeron canadensis HOM05D006137 ORTHO05D007697 5.8e-99 365.2 382 52.4
Solyc08g076410.4 Solanum lycopersicum HOM05D006137 ORTHO05D007697 1.7e-98 363.6 372 53.5
Nitab4.5_0002190g0020 Nicotiana tabacum HOM05D006137 ORTHO05D007697 2.2e-98 363.2 380 54.2
Sopen08g024990 Solanum pennellii HOM05D006137 ORTHO05D007697 2.2e-98 363.2 372 53.5
QL12p001513 Quercus lobata HOM05D006137 ORTHO05D007697 4.9e-98 362.1 359 57.7
PGSC0003DMG400014792 Solanum tuberosum HOM05D006137 ORTHO05D007697 4.9e-98 362.1 372 53.2
FAN20G1935 Fragaria x ananassa HOM05D006137 ORTHO05D007697 6.4e-98 361.7 309 62.8
THA.LOC104814417 Tarenaya hassleriana HOM05D006137 ORTHO05D007697 1.4e-97 360.5 316 60.1
HanXRQChr04g0098961 Helianthus annuus HOM05D006137 ORTHO05D007697 2.4e-97 359.8 312 58.3
Oeu017078.1 Olea europaea HOM05D006137 ORTHO05D007697 2.4e-97 359.8 301 60.1
Peaxi162Scf00170g00615 Petunia axillaris HOM05D006137 ORTHO05D007697 1.6e-96 357.1 388 51.3
PSO063G4597 Papaver somniferum HOM05D006137 ORTHO05D007697 3.5e-96 355.9 303 59.7
CAN.G726.20 Capsicum annuum HOM05D006137 ORTHO05D007697 1.7e-95 353.6 346 53.8
HPP92_014848 Vanilla planifolia HOM05D006137 ORTHO05D007697 2.5e-94 349.7 334 53.9
Sc24g0002950 Simmondsia chinensis HOM05D006137 ORTHO05D007697 1.1e-92 344.4 308 59.7
Eucgr.E00233 Eucalyptus grandis HOM05D006137 ORTHO05D007697 3.1e-92 342.8 293 62.5
Aa31LG9G15490 Aethionema arabicum HOM05D006137 ORTHO05D007697 4.0e-92 342.4 272 64.3
MSTRG.24846 Avicennia marina HOM05D006137 ORTHO05D007697 9.0e-92 341.3 388 50.3
Os10g0577700 Oryza sativa ssp. japonica HOM05D006137 ORTHO05D007697 5.8e-91 338.6 320 53.8
vmacro08163 Vaccinium macrocarpon HOM05D006137 ORTHO05D007697 1.0e-87 327.8 272 62.5
Lsat_1_v5_gn_6_3681 Lactuca sativa HOM05D006137 ORTHO05D007697 1.7e-87 327.0 314 54.8
Migut.A01172 Erythranthe guttata HOM05D006137 ORTHO05D007697 9.6e-86 321.2 308 57.5
unitig_748.g7545 Utricularia gibba HOM05D006137 ORTHO05D007697 1.1e-84 317.8 312 53.2
Zm00001eb025030 Zea mays HOM05D006137 ORTHO05D007697 1.5e-83 313.9 346 48.8
Haze_08142 Corylus avellana HOM05D006137 ORTHO05D007697 6.7e-79 298.5 516 40.7
Oeu019613.1 Olea europaea HOM05D006137 ORTHO05D007697 6.7e-79 298.5 305 52.1
Lj2A232T29 Lonicera japonica HOM05D006137 ORTHO05D007697 4.8e-77 292.4 327 50.5
ATR0829G218 Amborella trichopoda HOM05D006137 ORTHO05D007697 1.1e-76 291.2 277 54.5
SEGI_14560 Sequoiadendron giganteum HOM05D006137 ORTHO05D007697 1.4e-73 280.8 295 49.2
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 7.1e-73 278.5 310 51.3
Oeu019614.1 Olea europaea HOM05D006137 ORTHO05D007697 1.3e-71 274.2 305 49.2
Oeu002327.1 Olea europaea HOM05D006137 ORTHO05D007697 4.3e-70 269.2 225 60.0
Eucgr.E00231 Eucalyptus grandis HOM05D006137 ORTHO05D007697 4.5e-67 259.2 251 57.4
Mapoly0006s0263 Marchantia polymorpha HOM05D006137 ORTHO05D007697 1.0e-66 258.1 312 44.6
SMO228G0118 Selaginella moellendorffii HOM05D006137 ORTHO05D007697 7.9e-64 248.4 304 44.4
Pp3c12_17740 Physcomitrium patens HOM05D006137 ORTHO05D007697 9.0e-60 235.0 327 38.2
Manes.15G185701 Manihot esculenta HOM05D006137 ORTHO05D007697 2.0e-59 233.8 203 63.1
AagrBONN_evm.TU.Sc2ySwM_344.1996 Anthoceros agrestis HOM05D006137 ORTHO05D007697 2.6e-59 233.4 302 42.1
Hund09822 Selenicereus undatus HOM05D006137 ORTHO05D007697 3.0e-55 219.9 147 72.1
Ca_25185_v3 Cicer arietinum L. HOM05D006137 ORTHO05D007697 7.7e-51 205.3 168 62.5
AUR62002644 Chenopodium quinoa HOM05D006137 ORTHO05D007697 5.0e-50 202.6 166 61.4
AUR62002645 Chenopodium quinoa HOM05D006137 ORTHO05D007697 3.7e-45 186.4 174 56.9
AUR62040998 Chenopodium quinoa HOM05D006137 ORTHO05D007697 9.1e-44 181.8 140 62.9
Oeu033557.2 Olea europaea HOM05D006137 ORTHO05D007697 1.0e-42 178.3 176 56.8
Hund09821 Selenicereus undatus HOM05D006137 ORTHO05D000006 1.0e-42 178.3 156 57.1
C03p78000 Brassica napus HOM05D006137 ORTHO05D007697 1.3e-42 177.9 132 65.9
Glyma.07G152633 Glycine max HOM05D006137 ORTHO05D007697 8.2e-37 158.7 112 68.8
BolC1t02019H Brassica oleracea HOM05D006137 ORTHO05D007697 2.6e-30 137.1 132 56.8
CBR_g18978 Chara braunii HOM05D006137 ORTHO05D007697 2.0e-27 127.5 179 43.6
BolC3t20061H Brassica oleracea HOM05D006137 ORTHO05D007697 1.7e-26 124.4 132 50.8
C01p20920 Brassica napus HOM05D006137 ORTHO05D007697 5.0e-26 122.9 132 51.5
Medtr1g009450 Medicago truncatula HOM05D006137 ORTHO05D007697 8.3e-21 105.5 101 58.4
AUR62040999 Chenopodium quinoa HOM05D006137 ORTHO05D007697 3.1e-20 103.6 111 54.1
MCO11G470 Micromonas commoda HOM05D006137 ORTHO05D007697 5.5e-17 92.8 205 29.8
PRCOL_00002339 Prasinoderma coloniale HOM05D006137 ORTHO05D007697 5.4e-12 76.3 130 33.1
C02p41610 Brassica napus HOM05D006137 ORTHO05D007697 2.0e-11 74.3 43 74.4
BolC2t10179H Brassica oleracea HOM05D006137 ORTHO05D007697 2.0e-11 74.3 43 74.4
BolC2t11174H Brassica oleracea HOM05D006137 ORTHO05D007697 3.3e-09 67.0 31 87.1
BcaC09g50780 Brassica carinata HOM05D006137 ORTHO05D007697 5.2e-07 59.7 34 73.5


User provided reference genes

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