Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 1.1e-232 809.7 428 100.0
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 7.4e-197 690.6 463 77.5
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 1.8e-195 686.0 463 78.6
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 5.6e-189 664.5 468 78.4
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 7.6e-186 654.1 466 77.3
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 7.6e-186 654.1 466 76.4
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.7e-185 652.9 466 74.5
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.0e-182 643.7 482 73.0
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 6.9e-179 630.9 468 74.6
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 6.5e-169 597.8 388 80.2
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 1.0e-166 590.5 464 67.9
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 3.8e-161 572.0 422 68.5
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 8.5e-161 570.9 478 63.6
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 2.1e-159 566.2 429 65.5
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 3.6e-159 565.5 467 63.0
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 5.2e-158 561.6 421 66.7
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 5.2e-158 561.6 416 65.1
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 1.8e-155 553.1 430 63.3
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 3.5e-154 548.9 393 70.0
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 5.9e-154 548.1 470 61.7
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 1.1e-152 543.9 468 60.5
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 2.7e-151 539.3 367 72.5
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 2.7e-151 539.3 391 67.3
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 1.0e-150 537.3 391 67.0
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 1.2e-149 533.9 407 63.9
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 2.0e-149 533.1 446 61.9
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 3.3e-149 532.3 390 66.7
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 9.7e-149 530.8 407 63.6
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 3.7e-148 528.9 398 66.3
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 3.7e-148 528.9 445 60.0
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 4.8e-148 528.5 416 63.2
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 6.3e-148 528.1 413 63.9
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.1e-147 527.3 398 64.6
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.3e-147 525.0 391 67.5
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 2.0e-146 523.1 426 60.8
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 4.5e-146 521.9 391 66.8
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 4.5e-146 521.9 464 59.7
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 5.9e-146 521.5 406 62.3
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 5.9e-146 521.5 460 58.3
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 7.7e-146 521.2 420 61.4
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 7.7e-146 521.2 366 69.4
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 1.7e-145 520.0 421 62.0
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 2.9e-145 519.2 423 60.8
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 3.8e-145 518.8 422 60.9
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 3.8e-145 518.8 408 62.7
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 8.5e-145 517.7 426 60.6
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 8.5e-145 517.7 369 67.8
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 1.5e-144 516.9 405 62.7
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 1.9e-144 516.5 406 62.1
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 3.2e-144 515.8 423 60.3
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 5.5e-144 515.0 409 63.6
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 5.5e-144 515.0 405 64.4
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 7.2e-144 514.6 404 61.6
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 1.2e-143 513.8 400 61.5
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.2e-143 513.8 427 61.4
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 2.7e-143 512.7 422 60.0
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 2.7e-143 512.7 395 62.8
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 2.7e-143 512.7 395 62.8
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 2.7e-143 512.7 422 60.0
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 2.7e-143 512.7 454 57.9
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 3.6e-143 512.3 423 60.0
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 3.6e-143 512.3 400 61.8
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 1.0e-142 510.8 423 61.5
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 1.8e-142 510.0 395 62.5
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 2.3e-142 509.6 366 67.2
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 2.3e-142 509.6 366 67.5
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 5.2e-142 508.4 465 57.4
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 1.2e-141 507.3 466 56.9
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 1.5e-141 506.9 412 60.9
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.6e-141 506.1 422 61.4
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 4.4e-141 505.4 483 55.5
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 5.7e-141 505.0 400 61.8
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 7.5e-141 504.6 465 56.8
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 9.8e-141 504.2 366 66.1
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 1.3e-140 503.8 371 65.0
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 1.3e-140 503.8 544 50.6
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 1.7e-140 503.4 371 67.1
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 2.2e-140 503.1 366 66.1
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 2.2e-140 503.1 400 61.8
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 4.8e-140 501.9 422 60.7
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 1.4e-139 500.4 399 60.9
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 1.8e-139 500.0 399 60.9
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 9.1e-139 497.7 419 58.9
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 4.5e-138 495.4 372 63.4
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 4.5e-138 495.4 399 60.2
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 4.5e-138 495.4 399 60.2
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 4.5e-138 495.4 366 64.8
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 4.5e-138 495.4 437 57.7
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 5.9e-138 495.0 356 66.3
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 8.6e-137 491.1 400 60.0
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 9.5e-136 487.6 418 59.3
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 6.8e-134 481.5 333 68.5
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 4.4e-133 478.8 412 57.5
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 7.5e-133 478.0 398 59.5
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 6.3e-132 474.9 440 56.1
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 6.3e-132 474.9 357 63.9
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 1.1e-131 474.2 413 57.1
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 3.1e-131 472.6 413 59.3
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 9.2e-131 471.1 362 63.0
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 1.6e-130 470.3 421 59.1
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 4.5e-130 468.8 547 48.4
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 5.9e-130 468.4 386 59.8
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 1.5e-128 463.8 418 57.4
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.2e-127 460.7 430 55.3
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 4.7e-127 458.8 379 59.6
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 2.3e-126 456.4 329 67.2
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 6.8e-126 454.9 398 58.3
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 1.5e-125 453.8 411 54.7
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 7.5e-125 451.4 502 52.8
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.1e-123 447.6 333 65.2
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 1.2e-122 444.1 344 62.5
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 1.2e-122 444.1 344 62.5
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 1.6e-122 443.7 373 60.1
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 1.6e-119 433.7 474 54.2
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 4.1e-115 419.1 412 53.4
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 9.2e-115 417.9 408 50.2
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.5e-114 416.0 345 60.6
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 6.0e-114 415.2 401 53.6
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 3.0e-113 412.9 379 54.6
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 3.0e-113 412.9 319 59.9
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.9e-113 412.5 345 60.3
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 1.2e-109 401.0 320 61.2
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 8.3e-108 394.8 291 63.6
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 1.6e-103 380.6 365 47.9
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 1.6e-103 380.6 353 52.4
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 1.7e-100 370.5 293 62.1
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 2.9e-100 369.8 343 58.3
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 2.9e-100 369.8 369 50.4
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 1.4e-94 350.9 241 70.1
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 9.3e-91 338.2 207 75.4
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 2.7e-90 336.7 395 45.3
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.0e-89 334.7 229 69.0
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 3.0e-81 306.6 217 66.4
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 2.3e-73 280.4 208 66.3
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 4.5e-61 239.6 368 35.1
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 4.8e-55 219.5 294 46.3
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 1.8e-49 201.1 176 58.0
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 9.7e-48 195.3 308 35.1
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 4.1e-46 189.9 294 38.8
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 8.0e-42 175.6 148 59.5
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 8.0e-26 122.5 77 71.4
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.8e-22 111.3 60 81.7
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 1.5e-19 101.7 95 54.7
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.6e-18 98.2 70 65.7
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 2.3e-17 94.4 47 87.2
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 1.5e-16 91.7 93 45.2
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 3.5e-13 80.5 72 59.7
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 6.8e-09 66.2 32 87.5


User provided reference genes

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