Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 3.7e-283 977.6 523 100.0
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 2.4e-242 842.0 526 86.7
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 5.0e-232 807.7 526 83.5
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 9.5e-231 803.5 527 82.4
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.5e-228 796.2 527 81.8
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 5.8e-228 794.3 527 81.6
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 5.8e-228 794.3 527 81.8
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.2e-227 792.3 528 81.6
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 5.8e-220 767.7 517 80.5
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 1.4e-218 763.1 515 80.8
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 7.8e-217 757.3 504 81.2
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 1.8e-213 746.1 571 73.4
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 3.1e-213 745.3 539 74.8
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 2.0e-212 742.7 497 79.5
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 3.0e-208 728.8 457 83.2
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 3.0e-208 728.8 450 85.3
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 7.3e-207 724.2 485 79.4
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 2.8e-206 722.2 460 82.6
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 4.8e-206 721.5 545 72.5
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 6.2e-206 721.1 526 75.1
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 6.2e-206 721.1 529 73.5
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 8.1e-206 720.7 458 83.0
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 1.1e-205 720.3 462 82.7
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 1.1e-205 720.3 518 75.9
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 1.2e-204 716.8 527 75.9
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 1.5e-204 716.5 458 81.4
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 2.6e-204 715.7 525 74.7
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 3.4e-204 715.3 530 74.7
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 4.5e-204 714.9 456 82.5
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 4.5e-204 714.9 458 81.2
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 9.9e-204 713.8 458 81.0
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 6.4e-203 711.1 516 74.6
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 6.4e-203 711.1 460 82.2
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 1.4e-202 709.9 496 77.6
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 5.4e-202 708.0 463 81.4
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 5.4e-202 708.0 458 81.2
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 9.3e-202 707.2 459 81.0
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 1.2e-201 706.8 459 81.7
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 2.1e-201 706.1 457 81.8
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 2.1e-201 706.1 459 81.5
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 2.1e-201 706.1 459 81.5
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 2.7e-201 705.7 458 81.7
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 4.6e-201 704.9 504 76.0
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 6.0e-201 704.5 457 82.3
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 6.0e-201 704.5 536 73.3
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 6.0e-201 704.5 500 77.0
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 7.9e-201 704.1 496 77.0
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 1.0e-200 703.7 451 82.3
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 2.3e-200 702.6 461 80.7
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 3.0e-200 702.2 500 77.2
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 6.7e-200 701.0 494 77.1
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.5e-199 699.9 508 74.6
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 2.5e-199 699.1 507 76.1
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 4.3e-199 698.4 517 74.1
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 1.6e-198 696.4 529 72.8
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 4.8e-198 694.9 512 72.7
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 8.1e-198 694.1 452 79.4
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 2.4e-197 692.6 481 75.9
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 5.3e-197 691.4 486 77.4
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 5.3e-197 691.4 528 73.7
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 5.3e-197 691.4 524 72.3
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 6.9e-197 691.0 515 73.4
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 2.0e-196 689.5 476 76.5
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 4.5e-196 688.3 446 80.9
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.7e-195 686.4 499 74.5
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 1.4e-194 683.3 482 77.0
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 1.4e-194 683.3 482 77.0
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 1.9e-194 682.9 455 80.4
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 3.2e-194 682.2 444 80.6
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 3.2e-194 682.2 431 83.1
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 7.1e-194 681.0 472 76.3
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 1.2e-193 680.2 497 75.5
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 2.1e-193 679.5 459 78.6
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 2.7e-193 679.1 435 81.1
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 6.0e-193 677.9 482 76.6
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 6.0e-193 677.9 459 77.6
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 6.0e-193 677.9 453 78.1
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 2.3e-192 676.0 452 79.2
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 3.0e-192 675.6 456 77.4
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 8.7e-192 674.1 521 70.6
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 8.7e-192 674.1 456 78.5
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 1.9e-191 672.9 406 86.0
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 5.6e-191 671.4 530 69.8
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 1.6e-190 669.8 455 76.5
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 1.6e-190 669.8 453 78.6
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 2.8e-190 669.1 530 69.4
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.1e-189 667.2 499 72.3
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 5.3e-189 664.8 530 69.4
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 1.5e-188 663.3 476 73.9
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 1.4e-186 656.8 430 80.7
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.5e-186 656.0 525 67.8
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 3.2e-186 655.6 457 76.8
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.8e-184 649.8 488 71.1
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 2.3e-184 649.4 427 79.6
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 6.7e-184 647.9 426 79.8
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.1e-183 647.1 485 72.0
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 1.9e-183 646.4 459 74.5
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 3.3e-183 645.6 405 83.2
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 5.7e-183 644.8 485 72.0
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 5.7e-183 644.8 455 75.8
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 4.8e-182 641.7 457 74.6
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 5.0e-179 631.7 459 73.9
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 1.1e-178 630.6 446 74.0
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 4.6e-177 625.2 434 73.7
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 1.3e-176 623.6 498 70.7
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 3.3e-175 619.0 485 69.7
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 9.1e-173 610.9 471 70.1
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 2.6e-172 609.4 423 74.5
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 5.9e-172 608.2 517 64.2
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 1.3e-171 607.1 501 67.7
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 6.1e-169 598.2 444 72.1
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 3.8e-163 578.9 525 61.9
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 5.0e-163 578.6 421 75.1
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 4.2e-154 548.9 458 64.4
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 4.2e-154 548.9 458 64.4
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.5e-143 513.8 431 61.3
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 2.5e-138 496.5 499 55.5
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.4e-136 490.7 431 58.9
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 7.5e-135 485.0 376 71.8
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 7.5e-135 485.0 377 70.3
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 4.5e-132 475.7 363 70.5
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.9e-122 443.7 367 62.9
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 4.1e-109 399.4 230 91.7
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.7e-108 396.7 375 61.3
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 7.1e-101 372.1 434 48.4
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 1.2e-97 361.3 269 70.3
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 9.3e-93 345.1 421 49.9
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 4.3e-74 283.1 415 40.2
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 6.2e-73 279.3 169 88.8
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 6.2e-73 279.3 386 40.2
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 2.2e-70 270.8 156 93.6
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.4e-64 251.5 395 35.2
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 1.5e-63 248.1 223 59.2
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 5.7e-58 229.6 376 37.0
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 7.7e-55 219.2 234 54.7
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.3e-54 218.4 452 35.8
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 5.5e-53 213.0 162 67.9
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 6.3e-41 172.9 126 67.5
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 1.4e-40 171.8 143 68.5
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 2.7e-28 131.0 127 58.3
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 2.3e-27 127.9 84 76.2
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 1.3e-25 122.1 122 57.4
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 1.1e-24 119.0 98 69.4
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 4.0e-19 100.5 150 44.7
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 1.5e-18 98.6 388 24.7
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.3e-09 68.9 67 59.7


User provided reference genes

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