Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 2.1e-78 295.8 168 100.0
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 3.8e-72 275.0 167 91.6
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.8e-72 275.0 167 91.6
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.8e-72 275.0 167 91.6
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.5e-71 271.2 167 91.0
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.5e-71 271.2 167 92.8
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 5.5e-63 244.6 170 85.9
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 2.5e-60 235.7 166 84.3
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 7.4e-60 234.2 169 71.0
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 6.3e-59 231.1 168 81.0
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 1.1e-58 230.3 166 82.5
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 2.6e-57 225.7 168 70.2
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 1.0e-56 223.8 167 80.8
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 5.5e-55 218.0 165 80.0
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 5.5e-55 218.0 168 78.0
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 1.6e-54 216.5 168 65.5
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 6.1e-54 214.5 173 65.9
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 1.4e-53 213.4 173 65.3
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 3.9e-53 211.8 164 65.9
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.3e-52 208.4 167 65.3
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 1.3e-51 206.8 231 51.1
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 1.1e-50 203.8 167 65.3
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.8e-50 203.0 167 74.9
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 1.8e-50 203.0 166 66.9
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 2.4e-50 202.6 168 75.0
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 2.4e-50 202.6 164 75.0
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 3.1e-50 202.2 167 74.9
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 3.1e-50 202.2 167 74.9
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.5e-49 199.9 163 76.7
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 2.6e-49 199.1 165 60.6
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 2.6e-49 199.1 160 76.9
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 3.4e-49 198.7 168 76.2
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 5.0e-48 194.9 168 75.0
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 3.2e-47 192.2 168 57.7
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 5.5e-47 191.4 167 72.5
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 9.4e-47 190.7 163 72.4
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 3.6e-46 188.7 166 60.2
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 3.6e-46 188.7 166 69.3
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.8e-45 186.4 168 60.1
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 3.0e-45 185.7 166 71.1
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 3.0e-45 185.7 169 58.6
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 3.9e-45 185.3 166 72.3
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 5.1e-45 184.9 167 71.3
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 6.7e-45 184.5 159 73.0
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.1e-44 183.7 167 73.1
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.1e-44 183.7 167 73.1
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 2.0e-44 183.0 166 71.7
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 2.0e-44 183.0 167 71.9
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 2.0e-44 183.0 166 61.4
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.3e-43 180.3 168 56.0
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 1.7e-43 179.9 165 57.0
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 2.8e-43 179.1 167 67.7
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 3.7e-43 178.7 166 56.0
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 3.7e-43 178.7 145 74.5
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 6.3e-43 177.9 168 54.2
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 6.3e-43 177.9 168 56.0
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 6.3e-43 177.9 165 68.5
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 6.3e-43 177.9 165 55.8
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 8.2e-43 177.6 165 68.5
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 8.2e-43 177.6 165 72.7
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 1.1e-42 177.2 165 65.5
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.4e-42 176.8 166 69.3
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 2.4e-42 176.0 166 54.8
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 4.1e-42 175.3 164 70.7
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 4.1e-42 175.3 164 59.1
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 5.3e-42 174.9 132 84.1
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 9.1e-42 174.1 160 56.9
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 9.1e-42 174.1 167 67.7
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 1.2e-41 173.7 166 68.1
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 1.6e-41 173.3 166 69.3
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 2.0e-41 172.9 166 68.1
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 4.5e-41 171.8 168 66.1
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 4.5e-41 171.8 159 68.6
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 7.7e-41 171.0 126 86.5
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 2.2e-40 169.5 164 67.1
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 2.2e-40 169.5 164 67.1
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 2.9e-40 169.1 165 57.0
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 3.8e-40 168.7 168 58.3
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 6.5e-40 167.9 168 64.9
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 8.5e-40 167.5 168 61.9
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.1e-39 167.2 168 53.6
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.1e-39 167.2 162 53.1
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 1.5e-39 166.8 164 67.7
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 1.9e-39 166.4 163 68.7
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 2.5e-39 166.0 169 65.7
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 4.2e-39 165.2 163 65.6
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 4.2e-39 165.2 168 64.3
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 4.2e-39 165.2 165 64.8
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 7.2e-39 164.5 165 54.5
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 9.4e-39 164.1 159 68.6
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 3.6e-38 162.2 165 55.2
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 3.6e-38 162.2 167 53.9
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 3.6e-38 162.2 167 66.5
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 3.6e-38 162.2 164 65.9
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 6.1e-38 161.4 164 57.3
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 1.4e-37 160.2 164 64.0
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 6.7e-37 157.9 155 52.9
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 6.7e-37 157.9 168 51.8
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.0e-36 156.4 164 51.8
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.3e-36 155.6 168 52.4
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 3.3e-36 155.6 146 58.9
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 7.5e-36 154.5 320 40.6
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 1.7e-35 153.3 168 58.9
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 6.3e-35 151.4 164 50.6
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 6.3e-35 151.4 168 49.4
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 8.2e-35 151.0 111 84.7
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 2.4e-34 149.4 166 61.4
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 2.4e-34 149.4 166 61.4
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 3.1e-34 149.1 172 47.1
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 3.1e-34 149.1 121 80.2
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 5.3e-34 148.3 168 51.2
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 5.3e-34 148.3 168 51.2
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 7.0e-34 147.9 164 49.4
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 7.0e-34 147.9 168 50.6
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 9.1e-34 147.5 167 61.7
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 9.1e-34 147.5 168 51.2
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 3.5e-33 145.6 167 62.9
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 5.9e-33 144.8 168 53.0
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 7.7e-33 144.4 168 60.7
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 7.7e-33 144.4 163 63.2
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 1.7e-32 143.3 167 47.3
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 1.7e-32 143.3 167 47.3
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.7e-32 143.3 168 60.7
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 2.9e-32 142.5 124 57.3
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 3.8e-32 142.1 152 65.8
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 8.5e-32 141.0 161 46.6
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 8.5e-32 141.0 161 46.6
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 8.5e-32 141.0 161 46.6
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 8.5e-32 141.0 167 61.7
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 1.5e-31 140.2 169 60.4
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 2.5e-31 139.4 169 60.4
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 2.5e-31 139.4 169 60.4
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 3.2e-31 139.0 169 59.8
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 7.2e-31 137.9 167 47.3
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 9.4e-31 137.5 163 60.7
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 2.7e-30 136.0 153 47.1
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 3.6e-30 135.6 153 47.1
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 6.1e-30 134.8 167 55.1
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 8.0e-30 134.4 170 58.8
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 8.0e-30 134.4 155 61.3
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 6.3e-27 124.8 146 59.6
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 5.4e-26 121.7 148 44.6
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 1.6e-25 120.2 96 61.5
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 2.7e-25 119.4 164 39.0
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.9e-24 115.9 92 65.2
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 9.4e-23 110.9 95 60.0
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 1.8e-21 106.7 95 56.8
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.8e-19 99.4 91 56.0
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 1.8e-13 80.1 95 46.3
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.7e-11 73.6 44 77.3
Lj4g0014945 Lotus japonicus HOM05D000088 ORTHO05D004426 3.3e-07 59.3 88 46.6
Aqoxy5G03468 Aquilegia oxysepala HOM05D002893 ORTHO05D003387 9.5e-07 57.8 68 42.6
Migut.D00383 Erythranthe guttata HOM05D001789 ORTHO05D001755 1.2e-06 57.4 89 31.5
AagrBONN_evm.TU.Sc2ySwM_344.5184 Anthoceros agrestis HOM05D009890 ORTHO05D011110 2.1e-06 56.6 65 50.8
Nitab4.5_0000218g0010 Nicotiana tabacum HOM05D000088 ORTHO05D004426 2.1e-06 56.6 87 44.8
TAR633G2105 Trochodendron aralioides HOM05D007663 ORTHO05D009455 8.0e-06 54.7 72 37.5


User provided reference genes

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