Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 1.0e-81 306.6 147 100.0
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 6.2e-71 270.8 148 87.2
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 2.6e-69 265.4 148 85.1
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 2.6e-69 265.4 148 86.5
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 1.0e-68 263.5 148 83.8
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 4.2e-67 258.1 144 84.7
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 3.5e-66 255.0 172 72.1
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 3.5e-66 255.0 148 83.8
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 3.9e-65 251.5 172 70.9
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 2.4e-62 242.3 148 77.7
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 3.1e-62 241.9 148 77.7
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 1.2e-61 240.0 148 77.7
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 2.0e-61 239.2 148 76.4
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 2.6e-61 238.8 148 76.4
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 2.6e-61 238.8 148 77.0
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 4.5e-61 238.0 148 72.3
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 4.5e-61 238.0 148 72.3
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 4.5e-61 238.0 148 73.0
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 5.9e-61 237.7 148 77.0
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 7.6e-61 237.3 148 75.7
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 1.3e-60 236.5 148 75.0
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 1.7e-60 236.1 148 76.4
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 2.2e-60 235.7 148 73.6
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 2.9e-60 235.3 149 73.8
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 8.5e-60 233.8 148 74.3
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 8.5e-60 233.8 148 73.6
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 1.1e-59 233.4 148 73.6
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 1.4e-59 233.0 147 74.1
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 1.4e-59 233.0 145 71.0
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 1.4e-59 233.0 147 74.8
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 1.9e-59 232.6 148 73.6
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 1.9e-59 232.6 148 73.6
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 1.9e-59 232.6 136 81.6
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 1.9e-59 232.6 147 75.5
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 1.9e-59 232.6 154 75.3
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 2.5e-59 232.3 148 73.0
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 2.5e-59 232.3 148 74.3
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 2.5e-59 232.3 148 74.3
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 3.2e-59 231.9 148 71.6
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 5.5e-59 231.1 147 76.9
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 1.2e-58 229.9 147 75.5
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 2.7e-58 228.8 149 73.2
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 3.6e-58 228.4 145 69.7
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 4.6e-58 228.0 147 70.1
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 6.1e-58 227.6 145 69.0
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 7.9e-58 227.3 213 57.7
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 7.9e-58 227.3 168 66.7
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 7.9e-58 227.3 148 70.3
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 2.3e-57 225.7 147 69.4
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 2.3e-57 225.7 146 69.9
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 3.0e-57 225.3 147 72.8
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 3.0e-57 225.3 147 72.8
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 3.0e-57 225.3 149 70.5
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 3.9e-57 224.9 148 71.6
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 5.1e-57 224.6 145 73.8
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 5.1e-57 224.6 145 72.4
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 8.8e-57 223.8 145 69.7
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 1.5e-56 223.0 153 70.6
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 7.4e-56 220.7 146 70.5
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 1.3e-55 219.9 148 70.3
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 1.3e-55 219.9 171 66.7
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 1.7e-55 219.5 148 74.3
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 2.2e-55 219.2 148 69.6
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 2.2e-55 219.2 186 60.2
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 2.8e-55 218.8 148 70.3
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 4.8e-55 218.0 149 69.8
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 4.8e-55 218.0 149 69.8
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 8.2e-55 217.2 148 69.6
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 1.4e-54 216.5 148 69.6
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 1.4e-54 216.5 151 68.9
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 1.4e-54 216.5 146 72.6
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 1.4e-54 216.5 148 69.6
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 1.8e-54 216.1 148 68.9
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 3.1e-54 215.3 148 70.3
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 4.1e-54 214.9 149 66.4
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 2.0e-53 212.6 148 68.2
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 2.6e-53 212.2 146 66.4
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 1.7e-52 209.5 149 67.8
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 1.7e-52 209.5 146 65.8
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 2.9e-52 208.8 148 65.5
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 5.0e-52 208.0 148 66.2
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 8.5e-52 207.2 149 67.8
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 3.2e-51 205.3 165 61.8
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 2.7e-50 202.2 134 70.9
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 7.9e-50 200.7 173 55.5
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 3.9e-49 198.4 148 62.2
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 3.9e-49 198.4 124 74.2
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 6.7e-49 197.6 148 62.8
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 8.8e-49 197.2 149 63.1
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 1.5e-48 196.4 144 62.5
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 4.4e-48 194.9 126 70.6
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 9.7e-48 193.7 119 71.4
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 1.3e-47 193.4 111 86.5
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 5.5e-43 177.9 145 54.5
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 5.2e-41 171.4 100 83.0
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 2.7e-34 149.1 119 53.8
TWI60G1527 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 6.1e-34 147.9 148 52.7
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 1.2e-32 143.7 104 66.3
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 2.6e-32 142.5 93 69.9
Eucgr.E01790 Eucalyptus grandis HOM05D007311 ORTHO05D009011 3.2e-27 125.6 82 69.5
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 6.8e-25 117.9 101 50.5
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 4.1e-22 108.6 66 75.8
AagrBONN_evm.TU.Sc2ySwM_228.4293 Anthoceros agrestis HOM05D007311 ORTHO05D009011 3.5e-21 105.5 137 32.8
SMO139G0010 Selaginella moellendorffii HOM05D007311 ORTHO05D009011 7.7e-21 104.4 151 35.1
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 1.9e-19 99.8 103 53.4
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 7.2e-19 97.8 64 71.9
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 1.2e-18 97.1 65 69.2
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 2.1e-18 96.3 120 49.2
Ciclev10003443m.g Citrus clementina HOM05D007311 ORTHO05D009011 1.2e-16 90.5 77 51.9
Mapoly0040s0015 Marchantia polymorpha HOM05D007311 ORTHO05D009011 1.3e-15 87.0 142 29.6
FAN13G1634 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.1e-14 84.0 48 75.0
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 2.9e-12 75.9 66 59.1
Zm00001eb347540 Zea mays HOM05D007311 ORTHO05D009011 7.3e-11 71.2 67 46.3
Eucgr.E01843 Eucalyptus grandis HOM05D007311 ORTHO05D009011 2.6e-08 62.8 47 51.1
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 3.4e-08 62.4 38 73.7
Medtr2g084355 Medicago truncatula HOM05D003237 ORTHO05D003631 6.4e-07 58.2 44 68.2


User provided reference genes

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