Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G013600 Prunus persica HOM05D005907 ORTHO05D007033 1.8e-102 375.9 197 100.0
RcHm_v2.0_Chr7g0215261 Rosa chinensis HOM05D005907 ORTHO05D007033 1.4e-62 243.4 196 68.9
MD06G1011300 Malus domestica HOM05D005907 ORTHO05D007033 5.1e-60 235.0 196 63.3
FAN08G1334 Fragaria x ananassa HOM05D005907 ORTHO05D007033 9.6e-59 230.7 196 63.8
FvH4_5g24980 Fragaria vesca HOM05D005907 ORTHO05D007033 4.8e-58 228.4 196 64.3
FAN18G3850 Fragaria x ananassa HOM05D005907 ORTHO05D007033 4.8e-58 228.4 196 64.3
FAN04G3107 Fragaria x ananassa HOM05D005907 ORTHO05D007033 4.0e-57 225.3 192 63.5
CiPaw.11G074000 Carya illinoinensis HOM05D005907 ORTHO05D007033 9.3e-46 187.6 189 54.5
Cfa012308 Carpinus fangiana HOM05D005907 ORTHO05D007033 2.1e-45 186.4 189 53.4
Actinidia01244 Actinidia chinensis HOM05D005907 ORTHO05D007033 5.1e-44 181.8 189 51.3
CSS0017808 Camellia sinensis var. sinensis HOM05D005907 ORTHO05D007033 1.6e-42 176.8 189 50.3
GSVIVG01036890001 Vitis vinifera HOM05D005907 ORTHO05D007033 2.1e-42 176.4 189 48.1
Rhsim11G0037900 Rhododendron simsii HOM05D005907 ORTHO05D007033 3.1e-41 172.6 190 47.4
TAR636G1547 Trochodendron aralioides HOM05D005907 ORTHO05D007033 3.1e-41 172.6 174 50.0
Atru.chr8.2614 Acer truncatum HOM05D005907 ORTHO05D007033 6.9e-41 171.4 189 49.2
Sed0007709 Sechium edule HOM05D005907 ORTHO05D007033 1.5e-40 170.2 172 50.6
Potri.004G235000 Populus trichocarpa HOM05D005907 ORTHO05D007033 2.6e-40 169.5 191 48.7
Duzib205G2043 Durio zibethinus HOM05D005907 ORTHO05D007033 4.5e-40 168.7 190 48.4
COL.COLO4_16745 Corchorus olitorius HOM05D005907 ORTHO05D007033 1.0e-39 167.5 185 49.7
Oeu047809.2 Olea europaea HOM05D005907 ORTHO05D007033 1.0e-39 167.5 189 47.6
TWI60G0533 Tripterygium wilfordii HOM05D005907 ORTHO05D007033 2.2e-39 166.4 182 48.4
Oeu046770.1 Olea europaea HOM05D005907 ORTHO05D007033 3.8e-39 165.6 187 49.7
Ciclev10012886m.g Citrus clementina HOM05D005907 ORTHO05D007033 5.0e-39 165.2 191 47.6
Cc08_g05990 Coffea canephora HOM05D005907 ORTHO05D007033 1.9e-38 163.3 193 46.6
Manes.17G003749 Manihot esculenta HOM05D005907 ORTHO05D007033 2.5e-38 162.9 166 50.0
Thecc.03G320600 Theobroma cacao HOM05D005907 ORTHO05D007033 5.5e-38 161.8 196 48.5
ClCG07G011130 Citrullus lanatus HOM05D005907 ORTHO05D007033 7.1e-38 161.4 186 44.6
CsaV3_4G007120 Cucumis sativus L. HOM05D005907 ORTHO05D007033 2.1e-37 159.8 172 45.9
Nitab4.5_0000986g0090 Nicotiana tabacum HOM05D005907 ORTHO05D007033 3.5e-37 159.1 181 47.5
Lalb_Chr05g0215181 Lupinus albus HOM05D005907 ORTHO05D007033 4.6e-37 158.7 192 45.8
Nn1g09337 Nelumbo nucifera HOM05D005907 ORTHO05D007033 4.6e-37 158.7 190 44.2
Eucgr.E01152 Eucalyptus grandis HOM05D005907 ORTHO05D007033 1.0e-36 157.5 172 50.0
vmacro00100 Vaccinium macrocarpon HOM05D005907 ORTHO05D007033 1.8e-36 156.8 175 45.7
Lj3A1053G42 Lonicera japonica HOM05D005907 ORTHO05D007033 3.0e-36 156.0 185 48.1
CAN.G998.7 Capsicum annuum HOM05D005907 ORTHO05D007033 5.1e-36 155.2 171 46.2
Migut.A00472 Erythranthe guttata HOM05D005907 ORTHO05D007033 1.5e-35 153.7 186 45.2
Lalb_Chr09g0325061 Lupinus albus HOM05D005907 ORTHO05D007033 1.9e-35 153.3 192 44.8
MSTRG.25750 Avicennia marina HOM05D005907 ORTHO05D007033 3.3e-35 152.5 188 42.6
Duzib068G0478 Durio zibethinus HOM05D005907 ORTHO05D007033 3.3e-35 152.5 192 45.8
Lj2g0019236 Lotus japonicus HOM05D005907 ORTHO05D007033 7.4e-35 151.4 183 44.3
Solyc08g075290.2 Solanum lycopersicum HOM05D005907 ORTHO05D007033 7.4e-35 151.4 170 47.1
Glyma.01G153000 Glycine max HOM05D005907 ORTHO05D007033 1.6e-34 150.2 189 43.9
Sopen08g023890 Solanum pennellii HOM05D005907 ORTHO05D007033 1.6e-34 150.2 170 46.5
Lalb_Chr16g0380441 Lupinus albus HOM05D005907 ORTHO05D007033 2.8e-34 149.4 185 44.9
TAR629G0350 Trochodendron aralioides HOM05D005907 ORTHO05D007033 3.7e-34 149.1 174 45.4
arahy.Tifrunner.gnm1.ann1.4G5U2W Arachis hypogaea HOM05D005907 ORTHO05D007033 4.8e-34 148.7 177 44.1
arahy.Tifrunner.gnm1.ann1.Y9HS7A Arachis hypogaea HOM05D005907 ORTHO05D007033 4.8e-34 148.7 177 44.1
Gorai.008G218600 Gossypium raimondii HOM05D005907 ORTHO05D007033 4.8e-34 148.7 178 47.8
Gohir.D12G203800 Gossypium hirsutum HOM05D005907 ORTHO05D007033 1.4e-33 147.1 177 48.0
Medtr5g025640 Medicago truncatula HOM05D005907 ORTHO05D007033 1.4e-33 147.1 174 47.1
Peaxi162Scf00876g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 1.4e-33 147.1 183 44.8
VMungo1215G2629 Vigna mungo HOM05D001324 ORTHO05D001220 1.4e-33 147.1 188 43.1
Glyma.16G076400 Glycine max HOM05D005907 ORTHO05D007033 1.8e-33 146.7 188 43.6
PGR031G0343 Punica granatum HOM05D005907 ORTHO05D007033 1.8e-33 146.7 174 45.4
Nn3g19120 Nelumbo nucifera HOM05D005907 ORTHO05D007033 2.4e-33 146.4 172 44.8
Glyma.09G218300 Glycine max HOM05D005907 ORTHO05D007033 3.1e-33 146.0 189 42.9
CANSAT35G1964 Cannabis sativa HOM05D005907 ORTHO05D007033 3.4e-32 142.5 198 44.9
Gohir.A12G201000 Gossypium hirsutum HOM05D005907 ORTHO05D007033 3.4e-32 142.5 178 47.8
Gorai.004G176900 Gossypium raimondii HOM05D005907 ORTHO05D007033 4.5e-32 142.1 186 43.5
PGR042G1103 Punica granatum HOM05D005907 ORTHO05D007033 7.7e-32 141.4 156 50.6
Manes.15G184500 Manihot esculenta HOM05D005907 ORTHO05D007033 1.0e-31 141.0 189 42.9
SalBow8G0159 Salvia bowleyana HOM05D005907 ORTHO05D007033 1.0e-31 141.0 186 43.5
TPR.G8986 Trifolium pratense HOM05D005907 ORTHO05D007033 1.0e-31 141.0 185 43.2
Hund14310 Selenicereus undatus HOM05D005907 ORTHO05D007033 1.7e-31 140.2 188 44.1
Medtr8g072220 Medicago truncatula HOM05D005907 ORTHO05D007033 2.9e-31 139.4 190 45.3
Phvul.002G122500 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 2.9e-31 139.4 167 44.3
THA.LOC104806200 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 1.1e-30 137.5 168 47.0
Psat2g145040 Pisum sativum HOM05D005907 ORTHO05D007033 1.4e-30 137.1 184 45.1
Gohir.A08G148600 Gossypium hirsutum HOM05D005907 ORTHO05D007033 3.2e-30 136.0 187 43.9
Gohir.D08G169700 Gossypium hirsutum HOM05D005907 ORTHO05D007033 3.2e-30 136.0 186 43.5
SalBow4G0438 Salvia bowleyana HOM05D005907 ORTHO05D007033 4.2e-30 135.6 179 41.3
Dinv37434 Davidia involucrata HOM05D005907 ORTHO05D007033 4.6e-29 132.1 133 54.9
Nitab4.5_0006244g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 1.8e-28 130.2 184 42.9
ECA233G3754 Erigeron canadensis HOM05D005907 ORTHO05D007033 3.0e-28 129.4 159 46.5
Aa31LG2G14390 Aethionema arabicum HOM05D005907 ORTHO05D007033 3.9e-28 129.0 160 43.1
HanXRQChr08g0233691 Helianthus annuus HOM05D005907 ORTHO05D007033 3.9e-28 129.0 170 45.9
Sed0019955 Sechium edule HOM05D005907 ORTHO05D007033 3.9e-28 129.0 154 44.8
PSO339G2078 Papaver somniferum HOM05D005907 ORTHO05D007033 1.1e-27 127.5 174 39.1
VMungo0251G3198 Vigna mungo HOM05D005907 ORTHO05D007033 1.5e-27 127.1 151 45.7
ATR0568G210 Amborella trichopoda HOM05D005907 ORTHO05D007033 2.5e-27 126.3 168 40.5
Aa31LG6G1970 Aethionema arabicum HOM05D005907 ORTHO05D007033 4.3e-27 125.6 172 43.6
Carub.0001s3002 Capsella rubella HOM05D005907 ORTHO05D007033 2.2e-26 123.2 158 39.9
BcaB04g18131 Brassica carinata HOM05D005907 ORTHO05D007033 3.7e-26 122.5 157 38.9
AL7G34790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 4.8e-26 122.1 152 44.7
Thhalv10008873m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 4.8e-26 122.1 158 38.0
Phvul.003G278300 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 6.3e-26 121.7 151 47.0
BcaC07g37737 Brassica carinata HOM05D005907 ORTHO05D007033 8.2e-26 121.3 165 38.2
BcaNung01784 Brassica carinata HOM05D005907 ORTHO05D007033 8.2e-26 121.3 152 44.1
A08p10440 Brassica napus HOM05D005907 ORTHO05D007033 8.2e-26 121.3 192 35.4
BolC8t48118H Brassica oleracea HOM05D005907 ORTHO05D007033 8.2e-26 121.3 165 38.2
Sp1g27370 Schrenkiella parvula HOM05D005907 ORTHO05D007033 8.2e-26 121.3 161 37.9
Sp4g03880 Schrenkiella parvula HOM05D005907 ORTHO05D007033 1.4e-25 120.6 195 39.5
Carub.0007s2186 Capsella rubella HOM05D005907 ORTHO05D007033 2.4e-25 119.8 173 42.8
CARHR226160 Cardamine hirsuta HOM05D005907 ORTHO05D007033 3.1e-25 119.4 157 43.9
AT4G19370 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 4.1e-25 119.0 168 42.3
Thhalv10026210m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 4.1e-25 119.0 184 40.2
SGA_v2.0_scaffold121G33056 Striga asiatica HOM05D005907 ORTHO05D007033 4.1e-25 119.0 183 42.6
AL1G45790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 5.3e-25 118.6 181 35.9
Sp7g17980 Schrenkiella parvula HOM05D005907 ORTHO05D007033 5.3e-25 118.6 157 41.4
unitig_37.g12906 Utricularia gibba HOM05D005907 ORTHO05D007033 1.2e-24 117.5 155 41.3
CDE01G0013 Ceratophyllum demersum HOM05D005907 ORTHO05D007033 1.5e-24 117.1 147 41.5
BcaC09g51418 Brassica carinata HOM05D005907 ORTHO05D007033 2.0e-24 116.7 152 42.1
C01p13330 Brassica napus HOM05D005907 ORTHO05D007033 2.0e-24 116.7 152 42.1
BolC1t01308H Brassica oleracea HOM05D005907 ORTHO05D007033 2.0e-24 116.7 152 42.1
THA.LOC104814387 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 2.6e-24 116.3 173 37.0
CARHR031020 Cardamine hirsuta HOM05D005907 ORTHO05D007033 3.4e-24 115.9 159 36.5
A01p11320 Brassica napus HOM05D005907 ORTHO05D007033 4.5e-24 115.5 152 41.4
BraA01t01076Z Brassica rapa HOM05D005907 ORTHO05D007033 4.5e-24 115.5 152 41.4
BraA08t33042Z Brassica rapa HOM05D005907 ORTHO05D007033 5.9e-24 115.2 199 34.2
Sc07g0008040 Simmondsia chinensis HOM05D005907 ORTHO05D007033 2.5e-22 109.8 124 41.9
AT1G31720 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 7.2e-22 108.2 133 39.8
Cpa.g.c30909 Carica papaya HOM05D005907 ORTHO05D007033 7.2e-22 108.2 137 43.1
Zm00001eb251950 Zea mays HOM05D005907 ORTHO05D007033 9.4e-22 107.8 135 42.2
Haze_08421 Corylus avellana HOM05D005907 ORTHO05D007033 2.7e-21 106.3 112 50.9
Psat4g109120 Pisum sativum HOM05D005907 ORTHO05D007033 3.9e-20 102.4 143 46.9
EL10Ac5g12591 Beta vulgaris HOM05D005907 ORTHO05D007033 1.1e-19 100.9 196 32.7
Sed0021253 Sechium edule HOM05D005907 ORTHO05D007033 2.8e-18 96.3 122 41.8
Peaxi162Scf00550g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 4.5e-16 89.0 113 46.0
Os02g0703300 Oryza sativa ssp. japonica HOM05D005907 ORTHO05D007033 2.9e-15 86.3 141 34.0
Haze_08422 Corylus avellana HOM05D005907 ORTHO05D007033 5.0e-15 85.5 76 59.2
SEGI_15207 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 5.5e-14 82.0 178 32.6
Aqoxy2G03476 Aquilegia oxysepala HOM05D005907 ORTHO05D007033 4.7e-13 79.0 85 40.0
Nitab4.5_0009213g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 8.0e-13 78.2 76 50.0
ClCG11G016120 Citrullus lanatus HOM05D005907 ORTHO05D007033 3.0e-12 76.3 114 41.2
MELO3C016217.2 Cucumis melo HOM05D005907 ORTHO05D007033 3.9e-12 75.9 68 52.9
SEGI_02785 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 5.2e-12 75.5 147 34.0
arahy.Tifrunner.gnm1.ann1.UI3LS8 Arachis hypogaea HOM05D005907 ORTHO05D007033 5.7e-11 72.0 109 38.5
arahy.Tifrunner.gnm1.ann1.93DHY7 Arachis hypogaea HOM05D005907 ORTHO05D007033 1.7e-10 70.5 51 70.6
Nitab4.5_0000943g0070 Nicotiana tabacum HOM05D005907 ORTHO05D007033 2.2e-10 70.1 88 45.5
arahy.Tifrunner.gnm1.ann1.VB8HUC Arachis hypogaea HOM05D005907 ORTHO05D007033 1.1e-09 67.8 78 43.6
Lsat_1_v5_gn_6_17141 Lactuca sativa HOM05D005907 ORTHO05D007033 2.4e-09 66.6 89 42.7
SEGI_02210 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 7.0e-09 65.1 156 30.1
PGSC0003DMG400001952 Solanum tuberosum HOM05D005907 ORTHO05D007033 7.0e-09 65.1 54 53.7
ClCG11G016110 Citrullus lanatus HOM05D005907 ORTHO05D007033 2.0e-08 63.5 46 58.7
SMO201G0204 Selaginella moellendorffii HOM05D002819 ORTHO05D003207 2.6e-08 63.2 150 28.7
Aqoxy3G02055 Aquilegia oxysepala HOM05D002819 ORTHO05D003207 3.5e-08 62.8 170 27.6
Nn1g02013 Nelumbo nucifera HOM05D002819 ORTHO05D003207 5.9e-08 62.0 180 30.6
Sabra01G0179700 Salix brachista HOM05D005907 ORTHO05D007033 5.9e-08 62.0 78 42.3
Actinidia18697 Actinidia chinensis HOM05D002819 ORTHO05D003207 1.7e-07 60.5 170 29.4
CAN.G303.71 Capsicum annuum HOM05D002819 ORTHO05D003207 5.0e-07 58.9 175 28.6
RcHm_v2.0_Chr5g0061411 Rosa chinensis HOM05D029741 ORTHO05D007033 6.5e-07 58.5 34 76.5
SGA_v2.0_scaffold50G18432 Striga asiatica HOM05D002819 ORTHO05D003207 6.5e-07 58.5 186 28.0
Peaxi162Scf01650g00038 Petunia axillaris HOM05D002819 ORTHO05D003207 8.5e-07 58.2 172 29.7
CSS0046349 Camellia sinensis var. sinensis HOM05D002819 ORTHO05D003207 1.9e-06 57.0 161 28.6
Nitab4.5_0000021g0320 Nicotiana tabacum HOM05D002819 ORTHO05D003207 1.9e-06 57.0 182 29.7
PGSC0003DMG400000568 Solanum tuberosum HOM05D002819 ORTHO05D003207 1.9e-06 57.0 173 28.9
Peaxi162Scf00133g00916 Petunia axillaris HOM05D002819 ORTHO05D003207 2.5e-06 56.6 170 30.0
Sopen03g027610 Solanum pennellii HOM05D002819 ORTHO05D003207 3.2e-06 56.2 173 28.3
Prupe.2G323600 Prunus persica HOM05D002819 ORTHO05D003207 4.2e-06 55.8 171 29.2
Rhsim03G0220200 Rhododendron simsii HOM05D002819 ORTHO05D003207 4.2e-06 55.8 171 29.8
SalBow4G1237 Salvia bowleyana HOM05D002819 ORTHO05D003207 4.2e-06 55.8 171 30.4
Sc19g0000260 Simmondsia chinensis HOM05D002819 ORTHO05D003207 4.2e-06 55.8 176 27.8
Solyc03g096860.3 Solanum lycopersicum HOM05D002819 ORTHO05D003207 4.2e-06 55.8 173 28.3
AUR62028148 Chenopodium quinoa HOM05D002819 ORTHO05D003207 7.2e-06 55.1 169 28.4


User provided reference genes

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