Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G012300 Prunus persica HOM05D007656 ORTHO05D008529 3.0e-143 511.9 278 100.0
Prupe.5G011800 Prunus persica HOM05D007656 ORTHO05D008529 1.3e-72 277.3 186 76.9
Prupe.5G012500 Prunus persica HOM05D007656 ORTHO05D008529 3.1e-71 272.7 185 75.7
Prupe.5G012700 Prunus persica HOM05D007656 ORTHO05D008529 2.0e-70 270.0 186 74.2
Prupe.5G011700 Prunus persica HOM05D007656 ORTHO05D008529 8.8e-58 228.0 149 77.9
Prupe.5G012400 Prunus persica HOM05D007656 ORTHO05D008529 6.3e-56 221.9 147 76.9
Prupe.1G197200 Prunus persica HOM05D007656 ORTHO05D008529 3.1e-55 219.5 151 72.8
RcHm_v2.0_Chr6g0276271 Rosa chinensis HOM05D000005 ORTHO05D008529 2.5e-44 183.3 149 60.4
Prupe.4G127700 Prunus persica HOM05D007656 ORTHO05D008529 2.1e-43 180.3 151 60.9
RcHm_v2.0_Chr6g0276291 Rosa chinensis HOM05D000005 ORTHO05D008529 2.4e-39 166.8 137 59.1
MD06G1218400 Malus domestica HOM05D000306 ORTHO05D008529 3.1e-39 166.4 149 61.1
FAN21G1592 Fragaria x ananassa HOM05D000005 ORTHO05D008529 1.2e-38 164.5 133 59.4
MD07G1045600 Malus domestica HOM05D000009 ORTHO05D000008 1.6e-38 164.1 149 58.4
RcHm_v2.0_Chr6g0276251 Rosa chinensis HOM05D000005 ORTHO05D008529 1.6e-38 164.1 137 58.4
MD07G1045400 Malus domestica HOM05D000009 ORTHO05D000008 2.0e-38 163.7 149 58.4
FvH4_2g36090 Fragaria vesca HOM05D000005 ORTHO05D008529 3.5e-38 162.9 137 58.4
MD00G1172900 Malus domestica HOM05D000009 ORTHO05D000008 3.8e-37 159.5 144 56.2
Prupe.8G120400 Prunus persica HOM05D000005 ORTHO05D000012 8.5e-37 158.3 145 58.6
FvH4_2g14140 Fragaria vesca HOM05D000005 ORTHO05D008529 4.2e-36 156.0 133 57.9
FvH4_2g06570 Fragaria vesca HOM05D007656 ORTHO05D008529 5.5e-36 155.6 146 56.2
Prupe.8G119800 Prunus persica HOM05D000005 ORTHO05D000012 5.5e-36 155.6 134 61.2
FAN15G0049 Fragaria x ananassa HOM05D007656 ORTHO05D008529 7.2e-36 155.2 144 56.9
Prupe.8G119700 Prunus persica HOM05D007656 ORTHO05D008529 8.8e-34 148.3 132 58.3
MD15G1057200 Malus domestica HOM05D000521 ORTHO05D008529 1.5e-33 147.5 137 55.5
MD02G1277000 Malus domestica HOM05D007656 ORTHO05D008529 3.4e-33 146.4 137 54.7
FvH4_2g06610 Fragaria vesca HOM05D000005 ORTHO05D008529 2.8e-32 143.3 135 51.9
MD07G1044900 Malus domestica HOM05D007656 ORTHO05D008529 6.3e-32 142.1 130 56.2
Prupe.8G120300 Prunus persica HOM05D000005 ORTHO05D000012 1.5e-28 131.0 133 49.6
RcHm_v2.0_Chr6g0258611 Rosa chinensis HOM05D007656 ORTHO05D008529 8.0e-27 125.2 141 51.1
FvH4_2g06640 Fragaria vesca HOM05D007656 ORTHO05D008529 4.0e-26 122.9 128 51.6
FAN24G2886 Fragaria x ananassa HOM05D000005 ORTHO05D008529 5.2e-26 122.5 128 50.8
MD05G1139600 Malus domestica HOM05D000494 ORTHO05D008529 5.2e-26 122.5 134 39.6
Manes.10G012500 Manihot esculenta HOM05D000510 ORTHO05D001548 4.4e-25 119.4 194 36.1
Manes.10G012400 Manihot esculenta HOM05D000510 ORTHO05D001548 2.8e-24 116.7 170 37.6
Manes.10G012600 Manihot esculenta HOM05D000510 ORTHO05D001548 2.8e-24 116.7 169 37.9
RcHm_v2.0_Chr6g0258551 Rosa chinensis HOM05D007656 ORTHO05D008529 4.9e-24 115.9 132 46.2
Manes.01G113600 Manihot esculenta HOM05D007656 ORTHO05D008529 6.3e-24 115.5 125 43.2
Duzib132G0971 Durio zibethinus HOM05D007656 ORTHO05D008529 3.2e-23 113.2 128 43.8
Duzib213G0740 Durio zibethinus HOM05D007656 ORTHO05D008529 5.4e-23 112.5 133 41.4
Thecc.01G158100 Theobroma cacao HOM05D007656 ORTHO05D008529 9.2e-23 111.7 137 40.1
COL.COLO4_29685 Corchorus olitorius HOM05D007656 ORTHO05D008529 1.6e-22 110.9 134 42.5
MD03G1201200 Malus domestica HOM05D007656 ORTHO05D008529 1.6e-22 110.9 131 47.3
Ciclev10021347m.g Citrus clementina HOM05D007656 ORTHO05D008529 5.9e-22 109.0 134 41.8
Ciclev10002149m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.0e-21 108.2 120 44.2
Thecc.02G020200 Theobroma cacao HOM05D007656 ORTHO05D008529 1.3e-21 107.8 133 39.8
MD15G1057100 Malus domestica HOM05D007656 ORTHO05D008529 1.7e-21 107.5 109 49.5
FvH4_2g36100 Fragaria vesca HOM05D000005 ORTHO05D029394 2.3e-21 107.1 138 45.7
Atru.chr1.33 Acer truncatum HOM05D007656 ORTHO05D008529 2.9e-21 106.7 132 43.2
Manes.12G099400 Manihot esculenta HOM05D000009 ORTHO05D000008 2.9e-21 106.7 141 39.7
FvH4_2g14130 Fragaria vesca HOM05D007656 ORTHO05D029394 5.0e-21 105.9 143 45.5
Ciclev10024498m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.5e-20 103.6 130 40.8
Ciclev10024525m.g Citrus clementina HOM05D007656 ORTHO05D008529 7.3e-20 102.1 130 43.1
Duzib093G1087 Durio zibethinus HOM05D007656 ORTHO05D008529 9.5e-20 101.7 130 42.3
TWI53G0295 Tripterygium wilfordii HOM05D000694 ORTHO05D008529 9.5e-20 101.7 137 37.2
Prupe.4G212800 Prunus persica HOM05D007656 ORTHO05D008529 1.6e-19 100.9 138 41.3
Thecc.02G020400 Theobroma cacao HOM05D007656 ORTHO05D008529 1.6e-19 100.9 121 41.3
Cpa.g.sc87.8 Carica papaya HOM05D000317 ORTHO05D008529 2.8e-19 100.1 129 41.1
Manes.10G131200 Manihot esculenta HOM05D007656 ORTHO05D008529 2.8e-19 100.1 162 38.3
Manes.10G131300 Manihot esculenta HOM05D007656 ORTHO05D008529 6.1e-19 99.0 152 37.5
Thecc.02G021500 Theobroma cacao HOM05D007656 ORTHO05D008529 6.1e-19 99.0 148 37.8
Manes.10G012300 Manihot esculenta HOM05D000510 ORTHO05D001548 8.0e-19 98.6 132 38.6
FAN24G2255 Fragaria x ananassa HOM05D007656 ORTHO05D008529 1.0e-18 98.2 115 48.7
Thecc.02G023700 Theobroma cacao HOM05D007656 ORTHO05D008529 1.8e-18 97.4 154 35.7
Atru.chr6.33 Acer truncatum HOM05D007656 ORTHO05D008529 3.1e-18 96.7 132 40.9
Thecc.07G066400 Theobroma cacao HOM05D000521 ORTHO05D008529 3.1e-18 96.7 128 36.7
Thecc.02G020900 Theobroma cacao HOM05D007656 ORTHO05D008529 4.0e-18 96.3 133 36.8
FAN20G3034 Fragaria x ananassa HOM05D000005 ORTHO05D029394 8.9e-18 95.1 138 42.8
Ciclev10003516m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.5e-17 94.4 136 38.2
RcHm_v2.0_Chr5g0039471 Rosa chinensis HOM05D007656 ORTHO05D030061 2.6e-17 93.6 125 42.4
MD11G1218200 Malus domestica HOM05D007656 ORTHO05D008529 3.4e-17 93.2 109 47.7
Cpa.g.sc87.14 Carica papaya HOM05D000317 ORTHO05D008529 5.8e-17 92.4 129 38.8
Duzib264G0127 Durio zibethinus HOM05D007656 ORTHO05D008529 2.2e-16 90.5 100 47.0
Potri.015G125950 Populus trichocarpa HOM05D000521 ORTHO05D008529 3.7e-16 89.7 126 38.9
Potri.001G007501 Populus trichocarpa HOM05D007656 ORTHO05D008529 4.9e-16 89.4 139 38.8
THA.LOC104820128 Tarenaya hassleriana HOM05D007656 ORTHO05D008529 4.9e-16 89.4 135 33.3
RcHm_v2.0_Chr5g0039451 Rosa chinensis HOM05D007656 ORTHO05D030061 8.3e-16 88.6 137 35.8
Sabra19G0012000 Salix brachista HOM05D007656 ORTHO05D008529 1.1e-15 88.2 130 39.2
Atru.chr5.3422 Acer truncatum HOM05D007656 ORTHO05D008529 1.4e-15 87.8 131 35.9
Manes.07G014200 Manihot esculenta HOM05D007656 ORTHO05D008529 1.4e-15 87.8 161 32.9
Thecc.02G020000 Theobroma cacao HOM05D007656 ORTHO05D008529 1.9e-15 87.4 133 35.3
BcaC06g31517 Brassica carinata HOM05D000005 ORTHO05D000294 2.4e-15 87.0 127 37.8
Sabra19G0010500 Salix brachista HOM05D007656 ORTHO05D008529 2.4e-15 87.0 136 39.7
Prupe.8G120500 Prunus persica HOM05D007656 ORTHO05D008529 5.4e-15 85.9 177 33.9
CARHR110670 Cardamine hirsuta HOM05D000005 ORTHO05D008529 1.2e-14 84.7 126 33.3
Thecc.02G020700 Theobroma cacao HOM05D007656 ORTHO05D008529 1.2e-14 84.7 135 34.1
Sabra18G0026200 Salix brachista HOM05D007656 ORTHO05D008529 1.6e-14 84.3 135 33.3
Sabra19G0001900 Salix brachista HOM05D007656 ORTHO05D008529 1.6e-14 84.3 126 38.1
Prupe.4G212900 Prunus persica HOM05D007656 ORTHO05D008529 2.7e-14 83.6 119 43.7
RcHm_v2.0_Chr6g0276221 Rosa chinensis HOM05D007656 ORTHO05D029394 3.5e-14 83.2 108 44.4
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 3.5e-14 83.2 137 37.2
Thecc.02G023800 Theobroma cacao HOM05D007656 ORTHO05D008529 3.5e-14 83.2 155 33.5
Potri.018G023600 Populus trichocarpa HOM05D007656 ORTHO05D008529 4.6e-14 82.8 138 34.1
BolC8t51984H Brassica oleracea HOM05D007656 ORTHO05D008529 1.3e-13 81.3 127 32.3
Thhalv10002051m.g Eutrema salsugineum HOM05D000005 ORTHO05D008529 1.3e-13 81.3 127 34.6
Prupe.8G120000 Prunus persica HOM05D007656 ORTHO05D008529 1.3e-13 81.3 128 37.5
CARHR290800 Cardamine hirsuta HOM05D007656 ORTHO05D008529 1.7e-13 80.9 132 33.3
Sabra18G0026100 Salix brachista HOM05D007656 ORTHO05D008529 1.7e-13 80.9 135 32.6
A06p46380 Brassica napus HOM05D000005 ORTHO05D000294 2.3e-13 80.5 127 34.6
BraA06t27502Z Brassica rapa HOM05D000005 ORTHO05D000294 2.3e-13 80.5 127 34.6
Manes.04G013200 Manihot esculenta HOM05D000548 ORTHO05D008529 2.3e-13 80.5 151 32.5
Potri.T044600 Populus trichocarpa HOM05D000101 ORTHO05D000089 3.9e-13 79.7 146 36.3
COL.COLO4_30650 Corchorus olitorius HOM05D007656 ORTHO05D008529 5.0e-13 79.3 148 35.1
RcHm_v2.0_Chr1g0372601 Rosa chinensis HOM05D007656 ORTHO05D008529 5.0e-13 79.3 72 52.8
AL3G47945 Arabidopsis lyrata HOM05D000005 ORTHO05D000294 8.6e-13 78.6 124 33.1
CARHR110660 Cardamine hirsuta HOM05D000005 ORTHO05D008529 8.6e-13 78.6 126 31.7
Carub.0003s3445 Capsella rubella HOM05D000005 ORTHO05D000294 1.9e-12 77.4 127 31.5
AT2G20142 Arabidopsis thaliana HOM05D000005 ORTHO05D000294 2.5e-12 77.0 127 32.3
Ciclev10002893m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.5e-12 77.0 97 37.1
BcaB07g31565 Brassica carinata HOM05D007656 ORTHO05D008529 3.3e-12 76.6 132 31.8
BcaB07g31570 Brassica carinata HOM05D007656 ORTHO05D008529 3.3e-12 76.6 132 31.8
BcaB07g31574 Brassica carinata HOM05D007656 ORTHO05D008529 3.3e-12 76.6 132 31.8
Sabra19G0011800 Salix brachista HOM05D007656 ORTHO05D008529 4.3e-12 76.3 139 36.0
Potri.006G267201 Populus trichocarpa HOM05D007656 ORTHO05D008529 5.6e-12 75.9 136 33.8
Sabra19G0011600 Salix brachista HOM05D007656 ORTHO05D008529 1.2e-11 74.7 130 37.7
Potri.018G145558 Populus trichocarpa HOM05D000101 ORTHO05D000089 2.8e-11 73.6 138 36.2
BraA09t37029Z Brassica rapa HOM05D000005 ORTHO05D018617 4.7e-11 72.8 134 32.8
TWI18G1447 Tripterygium wilfordii HOM05D000008 ORTHO05D413543 4.7e-11 72.8 161 32.3
BcaB01g05192 Brassica carinata HOM05D000005 ORTHO05D018617 6.2e-11 72.4 139 32.4
Ciclev10003163m.g Citrus clementina HOM05D007656 ORTHO05D008529 6.2e-11 72.4 101 34.7
Ciclev10003970m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.1e-10 71.6 89 37.1
A09p13770 Brassica napus HOM05D000141 ORTHO05D001860 1.4e-10 71.2 134 32.1
C03p10340 Brassica napus HOM05D000005 ORTHO05D018617 1.8e-10 70.9 139 32.4
BolC3t13513H Brassica oleracea HOM05D000005 ORTHO05D018617 1.8e-10 70.9 139 32.4
BraA03t10209Z Brassica rapa HOM05D000005 ORTHO05D018617 1.8e-10 70.9 139 32.4
TWI18G0941 Tripterygium wilfordii HOM05D010260 ORTHO05D008529 2.3e-10 70.5 155 33.5
BolC9t54555H Brassica oleracea HOM05D000005 ORTHO05D018617 2.0e-09 67.4 127 30.7
BraA08t32207Z Brassica rapa HOM05D000005 ORTHO05D008529 5.8e-09 65.9 127 29.9
BcaC04g22696 Brassica carinata HOM05D000005 ORTHO05D018617 9.8e-09 65.1 127 29.9
C09p16450 Brassica napus HOM05D000141 ORTHO05D001860 9.8e-09 65.1 127 29.9
Ciclev10003708m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.9e-08 63.5 99 36.4
Ciclev10003595m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.4e-07 60.5 90 36.7
Cpa.g.sc48.191 Carica papaya HOM05D007656 ORTHO05D008529 5.4e-07 59.3 152 27.6
Sabra06G0209500 Salix brachista HOM05D007656 ORTHO05D008529 9.2e-07 58.5 130 30.8
Thecc.02G021400 Theobroma cacao HOM05D007656 ORTHO05D008529 9.2e-07 58.5 81 39.5
Sabra17G0068400 Salix brachista HOM05D007656 ORTHO05D008529 4.6e-06 56.2 60 45.0
Ciclev10004000m.g Citrus clementina HOM05D007656 ORTHO05D008529 6.0e-06 55.8 59 42.4


User provided reference genes

Program Settings