Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G011800 Prunus persica HOM05D007656 ORTHO05D008529 6.9e-121 437.6 264 100.0
Prupe.5G012300 Prunus persica HOM05D007656 ORTHO05D008529 1.2e-72 277.3 186 76.9
Prupe.5G011700 Prunus persica HOM05D007656 ORTHO05D008529 6.0e-64 248.4 149 94.0
Prupe.5G012700 Prunus persica HOM05D007656 ORTHO05D008529 1.9e-62 243.4 188 68.6
Prupe.5G012400 Prunus persica HOM05D007656 ORTHO05D008529 3.3e-62 242.7 147 93.2
Prupe.5G012500 Prunus persica HOM05D007656 ORTHO05D008529 3.3e-62 242.7 185 69.7
Prupe.1G197200 Prunus persica HOM05D007656 ORTHO05D008529 1.3e-50 204.1 149 71.1
Prupe.4G127700 Prunus persica HOM05D007656 ORTHO05D008529 1.1e-44 184.5 148 68.2
RcHm_v2.0_Chr6g0276271 Rosa chinensis HOM05D000005 ORTHO05D008529 2.9e-42 176.4 140 62.1
RcHm_v2.0_Chr6g0276291 Rosa chinensis HOM05D000005 ORTHO05D008529 7.3e-38 161.8 140 57.1
RcHm_v2.0_Chr6g0276251 Rosa chinensis HOM05D000005 ORTHO05D008529 1.6e-37 160.6 140 57.1
FAN21G1592 Fragaria x ananassa HOM05D000005 ORTHO05D008529 2.8e-37 159.8 133 59.4
FvH4_2g36090 Fragaria vesca HOM05D000005 ORTHO05D008529 1.1e-36 157.9 137 58.4
MD06G1218400 Malus domestica HOM05D000306 ORTHO05D008529 1.8e-36 157.1 147 59.2
MD07G1045400 Malus domestica HOM05D000009 ORTHO05D000008 2.4e-36 156.8 154 52.6
MD07G1045600 Malus domestica HOM05D000009 ORTHO05D000008 2.6e-35 153.3 154 51.9
FvH4_2g14140 Fragaria vesca HOM05D000005 ORTHO05D008529 2.9e-34 149.8 133 57.1
Prupe.8G120400 Prunus persica HOM05D000005 ORTHO05D000012 8.4e-34 148.3 139 58.3
MD02G1277000 Malus domestica HOM05D007656 ORTHO05D008529 7.9e-32 141.7 137 57.7
Prupe.8G119800 Prunus persica HOM05D000005 ORTHO05D000012 7.9e-32 141.7 134 56.7
MD00G1172900 Malus domestica HOM05D000009 ORTHO05D000008 3.0e-31 139.8 143 51.0
MD07G1044900 Malus domestica HOM05D007656 ORTHO05D008529 5.1e-31 139.0 138 51.4
MD15G1057200 Malus domestica HOM05D000521 ORTHO05D008529 3.3e-30 136.3 137 53.3
FvH4_2g06570 Fragaria vesca HOM05D007656 ORTHO05D008529 2.8e-29 133.3 159 45.9
FAN15G0049 Fragaria x ananassa HOM05D007656 ORTHO05D008529 2.8e-29 133.3 149 48.3
FvH4_2g06610 Fragaria vesca HOM05D000005 ORTHO05D008529 1.2e-27 127.9 135 48.1
Prupe.8G119700 Prunus persica HOM05D007656 ORTHO05D008529 2.4e-25 120.2 132 50.0
Prupe.8G120300 Prunus persica HOM05D000005 ORTHO05D000012 4.6e-24 115.9 149 45.0
RcHm_v2.0_Chr6g0258611 Rosa chinensis HOM05D007656 ORTHO05D008529 6.0e-24 115.5 140 47.1
FvH4_2g06640 Fragaria vesca HOM05D007656 ORTHO05D008529 2.3e-23 113.6 128 48.4
FAN24G2886 Fragaria x ananassa HOM05D000005 ORTHO05D008529 3.0e-23 113.2 128 47.7
RcHm_v2.0_Chr6g0258551 Rosa chinensis HOM05D007656 ORTHO05D008529 3.7e-21 106.3 132 43.2
MD05G1139600 Malus domestica HOM05D000494 ORTHO05D008529 1.1e-20 104.8 134 37.3
Ciclev10021347m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.4e-20 104.4 134 39.6
Thecc.01G158100 Theobroma cacao HOM05D007656 ORTHO05D008529 1.8e-20 104.0 140 37.1
FvH4_2g14130 Fragaria vesca HOM05D007656 ORTHO05D029394 2.4e-20 103.6 138 44.9
FvH4_2g36100 Fragaria vesca HOM05D000005 ORTHO05D029394 9.0e-20 101.7 138 43.5
MD15G1057100 Malus domestica HOM05D007656 ORTHO05D008529 2.0e-19 100.5 112 47.3
MD03G1201200 Malus domestica HOM05D007656 ORTHO05D008529 2.6e-19 100.1 131 42.0
Ciclev10024498m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.4e-19 99.8 130 40.0
Prupe.4G212800 Prunus persica HOM05D007656 ORTHO05D008529 1.3e-18 97.8 131 40.5
Manes.10G012500 Manihot esculenta HOM05D000510 ORTHO05D001548 1.4e-17 94.4 134 38.8
Manes.10G012600 Manihot esculenta HOM05D000510 ORTHO05D001548 1.4e-17 94.4 134 38.8
Manes.10G012400 Manihot esculenta HOM05D000510 ORTHO05D001548 1.9e-17 94.0 135 38.5
Ciclev10002149m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.2e-17 93.2 120 40.0
COL.COLO4_29685 Corchorus olitorius HOM05D007656 ORTHO05D008529 4.2e-17 92.8 134 38.8
Manes.01G113600 Manihot esculenta HOM05D007656 ORTHO05D008529 4.2e-17 92.8 127 38.6
FAN20G3034 Fragaria x ananassa HOM05D000005 ORTHO05D029394 1.2e-16 91.3 138 41.3
Thecc.02G020200 Theobroma cacao HOM05D007656 ORTHO05D008529 2.1e-16 90.5 133 36.1
Ciclev10024525m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.7e-16 90.1 130 40.0
Atru.chr1.33 Acer truncatum HOM05D007656 ORTHO05D008529 6.0e-16 89.0 131 38.2
Thecc.02G021500 Theobroma cacao HOM05D007656 ORTHO05D008529 6.0e-16 89.0 137 35.0
Duzib093G1087 Durio zibethinus HOM05D007656 ORTHO05D008529 7.9e-16 88.6 130 39.2
Manes.12G099400 Manihot esculenta HOM05D000009 ORTHO05D000008 7.9e-16 88.6 134 36.6
Duzib213G0740 Durio zibethinus HOM05D007656 ORTHO05D008529 3.9e-15 86.3 133 33.8
Manes.10G131300 Manihot esculenta HOM05D007656 ORTHO05D008529 3.9e-15 86.3 139 36.0
Prupe.8G120500 Prunus persica HOM05D007656 ORTHO05D008529 3.9e-15 86.3 178 30.9
Duzib132G0971 Durio zibethinus HOM05D007656 ORTHO05D008529 6.7e-15 85.5 128 35.9
FAN24G2255 Fragaria x ananassa HOM05D007656 ORTHO05D008529 8.7e-15 85.1 114 43.0
Thecc.02G020400 Theobroma cacao HOM05D007656 ORTHO05D008529 8.7e-15 85.1 121 37.2
Atru.chr6.33 Acer truncatum HOM05D007656 ORTHO05D008529 1.5e-14 84.3 132 38.6
Thecc.02G020900 Theobroma cacao HOM05D007656 ORTHO05D008529 1.9e-14 84.0 133 34.6
RcHm_v2.0_Chr5g0039471 Rosa chinensis HOM05D007656 ORTHO05D030061 2.5e-14 83.6 125 36.0
TWI53G0295 Tripterygium wilfordii HOM05D000694 ORTHO05D008529 4.3e-14 82.8 137 31.4
Sabra19G0012000 Salix brachista HOM05D007656 ORTHO05D008529 7.4e-14 82.0 130 36.9
THA.LOC104820128 Tarenaya hassleriana HOM05D007656 ORTHO05D008529 1.3e-13 81.3 135 30.4
Manes.04G013200 Manihot esculenta HOM05D000548 ORTHO05D008529 1.6e-13 80.9 159 30.8
Manes.07G014200 Manihot esculenta HOM05D007656 ORTHO05D008529 1.6e-13 80.9 154 30.5
Manes.10G012300 Manihot esculenta HOM05D000510 ORTHO05D001548 1.6e-13 80.9 144 33.3
Prupe.8G120000 Prunus persica HOM05D007656 ORTHO05D008529 1.6e-13 80.9 144 32.6
RcHm_v2.0_Chr5g0039451 Rosa chinensis HOM05D007656 ORTHO05D030061 2.1e-13 80.5 137 30.7
RcHm_v2.0_Chr6g0276221 Rosa chinensis HOM05D007656 ORTHO05D029394 2.1e-13 80.5 110 41.8
Thecc.02G020000 Theobroma cacao HOM05D007656 ORTHO05D008529 2.8e-13 80.1 133 33.8
Manes.10G131200 Manihot esculenta HOM05D007656 ORTHO05D008529 4.8e-13 79.3 170 31.2
Thecc.02G020700 Theobroma cacao HOM05D007656 ORTHO05D008529 4.8e-13 79.3 133 33.8
Ciclev10003516m.g Citrus clementina HOM05D007656 ORTHO05D008529 8.2e-13 78.6 135 34.1
Sabra19G0010500 Salix brachista HOM05D007656 ORTHO05D008529 8.2e-13 78.6 133 37.6
BcaC06g31517 Brassica carinata HOM05D000005 ORTHO05D000294 1.4e-12 77.8 132 34.8
Potri.001G007501 Populus trichocarpa HOM05D007656 ORTHO05D008529 1.4e-12 77.8 138 32.6
Prupe.4G212900 Prunus persica HOM05D007656 ORTHO05D008529 1.4e-12 77.8 119 38.7
Cpa.g.sc87.8 Carica papaya HOM05D000317 ORTHO05D008529 1.8e-12 77.4 129 35.7
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 2.4e-12 77.0 133 34.6
MD11G1218200 Malus domestica HOM05D007656 ORTHO05D008529 3.1e-12 76.6 107 43.0
Sabra19G0001900 Salix brachista HOM05D007656 ORTHO05D008529 3.1e-12 76.6 126 34.9
Thecc.02G023700 Theobroma cacao HOM05D007656 ORTHO05D008529 3.1e-12 76.6 134 32.8
Duzib264G0127 Durio zibethinus HOM05D007656 ORTHO05D008529 5.3e-12 75.9 111 37.8
Thecc.07G066400 Theobroma cacao HOM05D000521 ORTHO05D008529 1.2e-11 74.7 128 30.5
Cpa.g.sc87.14 Carica papaya HOM05D000317 ORTHO05D008529 2.0e-11 73.9 129 34.9
Potri.T044600 Populus trichocarpa HOM05D000101 ORTHO05D000089 3.4e-11 73.2 139 33.1
Potri.006G267201 Populus trichocarpa HOM05D007656 ORTHO05D008529 4.5e-11 72.8 134 31.3
CARHR110670 Cardamine hirsuta HOM05D000005 ORTHO05D008529 7.6e-11 72.0 126 31.0
A06p46380 Brassica napus HOM05D000005 ORTHO05D000294 1.3e-10 71.2 127 32.3
BraA06t27502Z Brassica rapa HOM05D000005 ORTHO05D000294 1.3e-10 71.2 127 32.3
AL3G47945 Arabidopsis lyrata HOM05D000005 ORTHO05D000294 1.7e-10 70.9 124 31.5
Atru.chr5.3422 Acer truncatum HOM05D007656 ORTHO05D008529 2.2e-10 70.5 131 32.8
Thhalv10002051m.g Eutrema salsugineum HOM05D000005 ORTHO05D008529 2.2e-10 70.5 127 31.5
AT2G20142 Arabidopsis thaliana HOM05D000005 ORTHO05D000294 2.9e-10 70.1 132 30.3
Potri.018G023600 Populus trichocarpa HOM05D007656 ORTHO05D008529 5.0e-10 69.3 138 29.7
Carub.0003s3445 Capsella rubella HOM05D000005 ORTHO05D000294 6.5e-10 68.9 127 29.9
TWI18G1447 Tripterygium wilfordii HOM05D000008 ORTHO05D413543 6.5e-10 68.9 124 36.3
BolC8t51984H Brassica oleracea HOM05D007656 ORTHO05D008529 8.5e-10 68.6 127 29.9
Sabra18G0026100 Salix brachista HOM05D007656 ORTHO05D008529 8.5e-10 68.6 135 28.9
Sabra19G0011600 Salix brachista HOM05D007656 ORTHO05D008529 8.5e-10 68.6 131 33.6
CARHR110660 Cardamine hirsuta HOM05D000005 ORTHO05D008529 1.4e-09 67.8 131 29.0
Sabra18G0026200 Salix brachista HOM05D007656 ORTHO05D008529 1.4e-09 67.8 135 28.1
TWI18G0941 Tripterygium wilfordii HOM05D010260 ORTHO05D008529 1.9e-09 67.4 187 28.9
COL.COLO4_30650 Corchorus olitorius HOM05D007656 ORTHO05D008529 2.5e-09 67.0 137 34.3
Sabra19G0011800 Salix brachista HOM05D007656 ORTHO05D008529 3.2e-09 66.6 139 32.4
Potri.015G125950 Populus trichocarpa HOM05D000521 ORTHO05D008529 5.5e-09 65.9 126 33.3
Potri.018G145558 Populus trichocarpa HOM05D000101 ORTHO05D000089 9.3e-09 65.1 134 32.1
CARHR290800 Cardamine hirsuta HOM05D007656 ORTHO05D008529 2.1e-08 63.9 132 28.8
Ciclev10002893m.g Citrus clementina HOM05D007656 ORTHO05D008529 4.6e-08 62.8 97 32.0
RcHm_v2.0_Chr1g0372601 Rosa chinensis HOM05D007656 ORTHO05D008529 6.1e-08 62.4 55 56.4
BcaB07g31565 Brassica carinata HOM05D007656 ORTHO05D008529 5.1e-07 59.3 132 27.3
BcaB07g31570 Brassica carinata HOM05D007656 ORTHO05D008529 5.1e-07 59.3 132 27.3
BcaB07g31574 Brassica carinata HOM05D007656 ORTHO05D008529 5.1e-07 59.3 132 27.3
Ciclev10003970m.g Citrus clementina HOM05D007656 ORTHO05D008529 5.1e-07 59.3 89 34.8
Sabra06G0209500 Salix brachista HOM05D007656 ORTHO05D008529 1.5e-06 57.8 128 28.9
Thecc.02G023800 Theobroma cacao HOM05D007656 ORTHO05D008529 1.5e-06 57.8 129 29.5
BolC9t54555H Brassica oleracea HOM05D000005 ORTHO05D018617 1.9e-06 57.4 140 27.9
BraA09t37029Z Brassica rapa HOM05D000005 ORTHO05D018617 3.3e-06 56.6 134 28.4
Ciclev10003163m.g Citrus clementina HOM05D007656 ORTHO05D008529 4.3e-06 56.2 101 28.7
COL.COLO4_00626 Corchorus olitorius HOM05D007656 ORTHO05D008529 5.7e-06 55.8 61 45.9
BcaC04g22696 Brassica carinata HOM05D000005 ORTHO05D018617 9.7e-06 55.1 140 27.1
C09p16450 Brassica napus HOM05D000141 ORTHO05D001860 9.7e-06 55.1 140 27.1


User provided reference genes

Program Settings