Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G011700 Prunus persica HOM05D007656 ORTHO05D008529 1.6e-69 266.2 151 100.0
Prupe.5G012400 Prunus persica HOM05D007656 ORTHO05D008529 1.5e-64 249.6 147 95.9
Prupe.5G011800 Prunus persica HOM05D007656 ORTHO05D008529 3.4e-64 248.4 149 94.0
Prupe.5G012300 Prunus persica HOM05D007656 ORTHO05D008529 4.8e-58 228.0 149 77.9
Prupe.5G012700 Prunus persica HOM05D007656 ORTHO05D008529 1.5e-56 223.0 149 76.5
Prupe.5G012500 Prunus persica HOM05D007656 ORTHO05D008529 2.0e-56 222.6 149 76.5
Prupe.1G197200 Prunus persica HOM05D007656 ORTHO05D008529 1.0e-47 193.7 149 67.8
Prupe.4G127700 Prunus persica HOM05D007656 ORTHO05D008529 5.7e-43 177.9 148 67.6
RcHm_v2.0_Chr6g0276271 Rosa chinensis HOM05D000005 ORTHO05D008529 1.8e-41 172.9 141 63.1
RcHm_v2.0_Chr6g0276251 Rosa chinensis HOM05D000005 ORTHO05D008529 2.1e-37 159.5 140 59.3
RcHm_v2.0_Chr6g0276291 Rosa chinensis HOM05D000005 ORTHO05D008529 3.6e-37 158.7 140 58.6
FAN21G1592 Fragaria x ananassa HOM05D000005 ORTHO05D008529 5.1e-36 154.8 133 59.4
MD07G1045400 Malus domestica HOM05D000009 ORTHO05D000008 1.5e-35 153.3 143 56.6
FvH4_2g36090 Fragaria vesca HOM05D000005 ORTHO05D008529 2.5e-35 152.5 137 58.4
Prupe.8G120400 Prunus persica HOM05D000005 ORTHO05D000012 2.2e-34 149.4 141 58.2
MD07G1045600 Malus domestica HOM05D000009 ORTHO05D000008 2.8e-34 149.1 143 55.2
MD06G1218400 Malus domestica HOM05D000306 ORTHO05D008529 1.4e-33 146.7 143 57.3
FvH4_2g14140 Fragaria vesca HOM05D000005 ORTHO05D008529 5.3e-33 144.8 133 57.1
Prupe.8G119800 Prunus persica HOM05D000005 ORTHO05D000012 5.3e-33 144.8 136 58.1
MD07G1044900 Malus domestica HOM05D007656 ORTHO05D008529 7.7e-32 141.0 130 56.2
MD02G1277000 Malus domestica HOM05D007656 ORTHO05D008529 1.3e-31 140.2 139 58.3
MD15G1057200 Malus domestica HOM05D000521 ORTHO05D008529 1.3e-31 140.2 137 56.2
MD00G1172900 Malus domestica HOM05D000009 ORTHO05D000008 2.2e-31 139.4 143 52.4
FAN15G0049 Fragaria x ananassa HOM05D007656 ORTHO05D008529 6.1e-29 131.3 139 51.8
FvH4_2g06570 Fragaria vesca HOM05D007656 ORTHO05D008529 1.8e-28 129.8 139 51.1
FvH4_2g06610 Fragaria vesca HOM05D000005 ORTHO05D008529 5.1e-28 128.3 135 48.9
FvH4_2g06640 Fragaria vesca HOM05D007656 ORTHO05D008529 1.5e-24 116.7 130 49.2
FAN24G2886 Fragaria x ananassa HOM05D000005 ORTHO05D008529 2.0e-24 116.3 130 48.5
Prupe.8G119700 Prunus persica HOM05D007656 ORTHO05D008529 3.4e-24 115.5 132 50.0
Prupe.8G120300 Prunus persica HOM05D000005 ORTHO05D000012 1.1e-22 110.5 133 46.6
RcHm_v2.0_Chr6g0258611 Rosa chinensis HOM05D007656 ORTHO05D008529 1.9e-22 109.8 142 47.2
FvH4_2g36100 Fragaria vesca HOM05D000005 ORTHO05D029394 9.4e-22 107.5 138 45.7
FvH4_2g14130 Fragaria vesca HOM05D007656 ORTHO05D029394 2.1e-21 106.3 138 45.7
Ciclev10021347m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.7e-21 105.9 135 40.7
RcHm_v2.0_Chr6g0258551 Rosa chinensis HOM05D007656 ORTHO05D008529 2.7e-21 105.9 132 43.2
Thecc.01G158100 Theobroma cacao HOM05D007656 ORTHO05D008529 1.0e-20 104.0 140 38.6
MD05G1139600 Malus domestica HOM05D000494 ORTHO05D008529 1.8e-20 103.2 134 35.8
MD03G1201200 Malus domestica HOM05D007656 ORTHO05D008529 6.7e-20 101.3 132 42.4
Prupe.4G212800 Prunus persica HOM05D007656 ORTHO05D008529 6.7e-20 101.3 138 41.3
Ciclev10024498m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.1e-19 100.5 131 39.7
MD15G1057100 Malus domestica HOM05D007656 ORTHO05D008529 2.0e-19 99.8 105 50.5
Manes.10G012500 Manihot esculenta HOM05D000510 ORTHO05D001548 3.3e-19 99.0 135 39.3
Manes.10G012600 Manihot esculenta HOM05D000510 ORTHO05D001548 3.3e-19 99.0 135 39.3
Manes.10G012400 Manihot esculenta HOM05D000510 ORTHO05D001548 7.4e-19 97.8 133 40.6
FAN20G3034 Fragaria x ananassa HOM05D000005 ORTHO05D029394 1.3e-18 97.1 138 43.5
Ciclev10002149m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.7e-18 95.5 120 40.8
COL.COLO4_29685 Corchorus olitorius HOM05D007656 ORTHO05D008529 1.8e-17 93.2 134 38.8
Thecc.02G020200 Theobroma cacao HOM05D007656 ORTHO05D008529 7.0e-17 91.3 133 36.8
Thecc.02G021500 Theobroma cacao HOM05D007656 ORTHO05D008529 1.2e-16 90.5 136 36.8
Manes.01G113600 Manihot esculenta HOM05D007656 ORTHO05D008529 1.6e-16 90.1 127 37.0
Ciclev10024525m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.5e-16 89.0 131 39.7
Atru.chr1.33 Acer truncatum HOM05D007656 ORTHO05D008529 5.9e-16 88.2 131 36.6
Manes.12G099400 Manihot esculenta HOM05D000009 ORTHO05D000008 5.9e-16 88.2 141 33.3
Duzib093G1087 Durio zibethinus HOM05D007656 ORTHO05D008529 7.7e-16 87.8 130 39.2
Duzib213G0740 Durio zibethinus HOM05D007656 ORTHO05D008529 1.3e-15 87.0 133 34.6
Manes.10G131300 Manihot esculenta HOM05D007656 ORTHO05D008529 1.3e-15 87.0 139 36.7
Duzib132G0971 Durio zibethinus HOM05D007656 ORTHO05D008529 2.2e-15 86.3 126 35.7
RcHm_v2.0_Chr5g0039471 Rosa chinensis HOM05D007656 ORTHO05D030061 2.9e-15 85.9 125 38.4
Thecc.02G020400 Theobroma cacao HOM05D007656 ORTHO05D008529 3.8e-15 85.5 121 38.0
TWI53G0295 Tripterygium wilfordii HOM05D000694 ORTHO05D008529 3.8e-15 85.5 135 32.6
Atru.chr6.33 Acer truncatum HOM05D007656 ORTHO05D008529 6.5e-15 84.7 136 36.8
FAN24G2255 Fragaria x ananassa HOM05D007656 ORTHO05D008529 6.5e-15 84.7 114 44.7
Thecc.02G020900 Theobroma cacao HOM05D007656 ORTHO05D008529 1.1e-14 84.0 133 34.6
THA.LOC104820128 Tarenaya hassleriana HOM05D007656 ORTHO05D008529 1.9e-14 83.2 135 32.6
Manes.10G012300 Manihot esculenta HOM05D000510 ORTHO05D001548 2.5e-14 82.8 134 34.3
Thecc.02G020000 Theobroma cacao HOM05D007656 ORTHO05D008529 2.5e-14 82.8 133 35.3
Prupe.8G120500 Prunus persica HOM05D007656 ORTHO05D008529 3.2e-14 82.4 133 38.3
Prupe.8G120000 Prunus persica HOM05D007656 ORTHO05D008529 5.5e-14 81.6 129 36.4
Cpa.g.sc87.8 Carica papaya HOM05D000317 ORTHO05D008529 9.4e-14 80.9 134 35.1
Potri.001G007501 Populus trichocarpa HOM05D007656 ORTHO05D008529 9.4e-14 80.9 134 35.1
Thecc.02G023700 Theobroma cacao HOM05D007656 ORTHO05D008529 9.4e-14 80.9 134 32.8
BcaC06g31517 Brassica carinata HOM05D000005 ORTHO05D000294 1.6e-13 80.1 132 34.8
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 1.6e-13 80.1 133 36.1
Thecc.02G020700 Theobroma cacao HOM05D007656 ORTHO05D008529 1.6e-13 80.1 133 34.6
Prupe.4G212900 Prunus persica HOM05D007656 ORTHO05D008529 2.1e-13 79.7 119 39.5
Ciclev10003516m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.7e-13 79.3 135 34.8
Manes.10G131200 Manihot esculenta HOM05D007656 ORTHO05D008529 2.7e-13 79.3 131 36.6
Sabra19G0010500 Salix brachista HOM05D007656 ORTHO05D008529 2.7e-13 79.3 133 38.3
Sabra19G0012000 Salix brachista HOM05D007656 ORTHO05D008529 2.7e-13 79.3 130 35.4
MD11G1218200 Malus domestica HOM05D007656 ORTHO05D008529 3.6e-13 79.0 107 43.0
Manes.07G014200 Manihot esculenta HOM05D007656 ORTHO05D008529 4.7e-13 78.6 124 33.1
RcHm_v2.0_Chr6g0276221 Rosa chinensis HOM05D007656 ORTHO05D029394 4.7e-13 78.6 102 43.1
RcHm_v2.0_Chr5g0039451 Rosa chinensis HOM05D007656 ORTHO05D030061 6.1e-13 78.2 134 32.1
Cpa.g.sc87.14 Carica papaya HOM05D000317 ORTHO05D008529 1.0e-12 77.4 134 34.3
Potri.006G267201 Populus trichocarpa HOM05D007656 ORTHO05D008529 2.3e-12 76.3 131 34.4
Thecc.07G066400 Theobroma cacao HOM05D000521 ORTHO05D008529 4.0e-12 75.5 126 31.7
Sabra19G0001900 Salix brachista HOM05D007656 ORTHO05D008529 5.2e-12 75.1 126 35.7
Manes.07G014101 Manihot esculenta HOM05D007656 ORTHO05D008529 6.7e-12 74.7 124 32.3
A06p46380 Brassica napus HOM05D000005 ORTHO05D000294 1.5e-11 73.6 132 32.6
BraA06t27502Z Brassica rapa HOM05D000005 ORTHO05D000294 1.5e-11 73.6 132 32.6
CARHR110670 Cardamine hirsuta HOM05D000005 ORTHO05D008529 1.5e-11 73.6 127 31.5
TWI18G1447 Tripterygium wilfordii HOM05D000008 ORTHO05D413543 1.5e-11 73.6 141 34.0
Duzib264G0127 Durio zibethinus HOM05D007656 ORTHO05D008529 2.0e-11 73.2 100 39.0
Manes.04G013200 Manihot esculenta HOM05D000548 ORTHO05D008529 2.6e-11 72.8 148 29.7
AT2G20142 Arabidopsis thaliana HOM05D000005 ORTHO05D000294 3.3e-11 72.4 132 30.3
Carub.0003s3445 Capsella rubella HOM05D000005 ORTHO05D000294 3.3e-11 72.4 132 30.3
AL3G47945 Arabidopsis lyrata HOM05D000005 ORTHO05D000294 4.4e-11 72.0 125 31.2
BcaC06g34402 Brassica carinata HOM05D000005 ORTHO05D008529 5.7e-11 71.6 132 31.8
C07p29060 Brassica napus HOM05D001366 ORTHO05D008529 5.7e-11 71.6 132 31.8
BolC7t43445H Brassica oleracea HOM05D001366 ORTHO05D008529 5.7e-11 71.6 132 31.8
Potri.018G023600 Populus trichocarpa HOM05D007656 ORTHO05D008529 5.7e-11 71.6 138 31.2
COL.COLO4_30650 Corchorus olitorius HOM05D007656 ORTHO05D008529 7.5e-11 71.2 139 35.3
Thhalv10002051m.g Eutrema salsugineum HOM05D000005 ORTHO05D008529 7.5e-11 71.2 132 31.1
Potri.T044600 Populus trichocarpa HOM05D000101 ORTHO05D000089 7.5e-11 71.2 135 33.3
BolC8t51984H Brassica oleracea HOM05D007656 ORTHO05D008529 9.7e-11 70.9 132 29.5
Sabra18G0026200 Salix brachista HOM05D007656 ORTHO05D008529 1.7e-10 70.1 133 30.1
TWI18G0941 Tripterygium wilfordii HOM05D010260 ORTHO05D008529 1.7e-10 70.1 137 32.1
Sabra18G0026100 Salix brachista HOM05D007656 ORTHO05D008529 2.8e-10 69.3 133 30.1
Sabra19G0011600 Salix brachista HOM05D007656 ORTHO05D008529 2.8e-10 69.3 131 34.4
CARHR110660 Cardamine hirsuta HOM05D000005 ORTHO05D008529 6.3e-10 68.2 131 29.8
Manes.10G119600 Manihot esculenta HOM05D000138 ORTHO05D008529 1.1e-09 67.4 130 31.5
Sabra19G0011800 Salix brachista HOM05D007656 ORTHO05D008529 1.1e-09 67.4 139 33.1
Potri.015G125950 Populus trichocarpa HOM05D000521 ORTHO05D008529 3.1e-09 65.9 126 34.1
CARHR290800 Cardamine hirsuta HOM05D007656 ORTHO05D008529 5.3e-09 65.1 132 29.5
Ciclev10002893m.g Citrus clementina HOM05D007656 ORTHO05D008529 9.1e-09 64.3 97 34.0
Manes.10G119500 Manihot esculenta HOM05D000138 ORTHO05D000078 9.1e-09 64.3 130 29.2
RcHm_v2.0_Chr1g0372601 Rosa chinensis HOM05D007656 ORTHO05D008529 1.2e-08 63.9 55 58.2
Potri.018G145558 Populus trichocarpa HOM05D000101 ORTHO05D000089 4.5e-08 62.0 130 33.1
Sabra06G0209500 Salix brachista HOM05D007656 ORTHO05D008529 5.9e-08 61.6 127 32.3
Thecc.02G023800 Theobroma cacao HOM05D007656 ORTHO05D008529 7.7e-08 61.2 128 30.5
Ciclev10003970m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.9e-07 59.3 89 33.7
BcaB07g31565 Brassica carinata HOM05D007656 ORTHO05D008529 3.8e-07 58.9 126 27.8
BcaB07g31570 Brassica carinata HOM05D007656 ORTHO05D008529 3.8e-07 58.9 126 27.8
BcaB07g31574 Brassica carinata HOM05D007656 ORTHO05D008529 3.8e-07 58.9 126 27.8
BolC9t54555H Brassica oleracea HOM05D000005 ORTHO05D018617 8.5e-07 57.8 126 27.8
Ciclev10003163m.g Citrus clementina HOM05D007656 ORTHO05D008529 8.5e-07 57.8 101 30.7
BraA09t37029Z Brassica rapa HOM05D000005 ORTHO05D018617 1.9e-06 56.6 126 27.8
BcaB01g05192 Brassica carinata HOM05D000005 ORTHO05D018617 2.5e-06 56.2 139 28.1
COL.COLO4_00626 Corchorus olitorius HOM05D007656 ORTHO05D008529 3.2e-06 55.8 60 46.7
BcaC04g22696 Brassica carinata HOM05D000005 ORTHO05D018617 4.2e-06 55.5 126 27.0
C09p16450 Brassica napus HOM05D000141 ORTHO05D001860 4.2e-06 55.5 126 27.0
C03p10340 Brassica napus HOM05D000005 ORTHO05D018617 7.2e-06 54.7 139 28.1
BolC3t13513H Brassica oleracea HOM05D000005 ORTHO05D018617 7.2e-06 54.7 139 28.1
BraA03t10209Z Brassica rapa HOM05D000005 ORTHO05D018617 7.2e-06 54.7 139 28.1
A09p13770 Brassica napus HOM05D000141 ORTHO05D001860 9.4e-06 54.3 126 27.0


User provided reference genes

Program Settings