Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G009500 Prunus persica HOM05D006218 ORTHO05D007338 2.9e-209 732.3 563 100.0
MD16G1284000 Malus domestica HOM05D006218 ORTHO05D007338 2.9e-161 572.8 565 84.6
QL02p015096 Quercus lobata HOM05D006218 ORTHO05D007338 7.1e-123 445.3 546 54.0
CiPaw.08G075100 Carya illinoinensis HOM05D006218 ORTHO05D007338 8.7e-121 438.3 565 65.1
Dinv31962 Davidia involucrata HOM05D006218 ORTHO05D007338 8.7e-121 438.3 546 66.3
QL02p015030 Quercus lobata HOM05D006218 ORTHO05D007338 1.5e-120 437.6 542 67.5
CANSAT80G1826 Cannabis sativa HOM05D006218 ORTHO05D007338 4.0e-118 429.5 546 74.0
Thecc.08G062100 Theobroma cacao HOM05D006218 ORTHO05D007338 4.4e-117 426.0 565 71.9
GSVIVG01013390001 Vitis vinifera HOM05D006218 ORTHO05D007338 4.4e-117 426.0 517 65.6
Duzib093G0304 Durio zibethinus HOM05D006218 ORTHO05D007338 6.0e-114 415.6 555 68.5
Hma1.2p1_0060F.1_g032840 Hydrangea macrophylla HOM05D006218 ORTHO05D007338 3.0e-113 413.3 545 62.4
Duzib041G0398 Durio zibethinus HOM05D006218 ORTHO05D007338 4.8e-111 406.0 546 63.9
FvH4_5g25350 Fragaria vesca HOM05D006218 ORTHO05D007338 4.8e-111 406.0 566 64.0
CSS0043525 Camellia sinensis var. sinensis HOM05D006218 ORTHO05D007338 1.2e-109 401.4 550 64.0
TWI39G0099 Tripterygium wilfordii HOM05D006218 ORTHO05D007338 2.6e-109 400.2 558 57.5
CSS0036772 Camellia sinensis var. sinensis HOM05D006218 ORTHO05D007338 5.8e-109 399.1 550 63.5
Gohir.D05G181600 Gossypium hirsutum HOM05D006218 ORTHO05D007338 1.7e-108 397.5 550 63.3
Ciclev10000757m.g Citrus clementina HOM05D006218 ORTHO05D007338 2.2e-108 397.1 552 64.3
PGR083G1452 Punica granatum HOM05D006218 ORTHO05D007338 3.8e-108 396.4 535 67.1
Gorai.009G186600 Gossypium raimondii HOM05D006218 ORTHO05D007338 1.1e-107 394.8 575 61.6
Medtr2g100200 Medicago truncatula HOM05D006218 ORTHO05D007338 9.6e-104 381.7 514 40.9
Cc00_g16990 Coffea canephora HOM05D006218 ORTHO05D007338 5.8e-101 372.5 544 60.1
MELO3C017038.2 Cucumis melo HOM05D006218 ORTHO05D007338 1.0e-97 361.7 548 53.3
Atru.BG.229.p Acer truncatum HOM05D006218 ORTHO05D007338 2.3e-97 360.5 469 51.4
Ah.04g161150 Amaranthus hybridus HOM05D006218 ORTHO05D007338 5.1e-97 359.4 517 61.1
CsaV3_4G037400 Cucumis sativus L. HOM05D006218 ORTHO05D007338 5.1e-97 359.4 548 52.2
EL10Ac4g09913 Beta vulgaris HOM05D006218 ORTHO05D007338 6.7e-97 359.0 571 56.2
ClCG11G018820 Citrullus lanatus HOM05D006218 ORTHO05D007338 5.7e-96 355.9 543 58.0
Thhalv10003177m.g Eutrema salsugineum HOM05D006218 ORTHO05D007338 1.3e-95 354.8 512 46.9
Sed0014170 Sechium edule HOM05D006218 ORTHO05D007338 2.9e-92 343.6 548 58.8
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 3.8e-92 343.2 481 70.1
RcHm_v2.0_Chr6g0271981 Rosa chinensis HOM05D006218 ORTHO05D007338 1.1e-91 341.7 569 60.1
Lsat_1_v5_gn_2_69281 Lactuca sativa HOM05D006218 ORTHO05D007338 2.2e-87 327.4 546 39.9
SHI24507 Sapria himalayana HOM05D006218 ORTHO05D007338 2.2e-87 327.4 522 47.9
Sc16g0011970 Simmondsia chinensis HOM05D006218 ORTHO05D007338 4.1e-86 323.2 548 58.2
Sopen02g018380 Solanum pennellii HOM05D006218 ORTHO05D007338 9.0e-86 322.0 543 62.4
FAN18G0123 Fragaria x ananassa HOM05D006218 ORTHO05D007338 7.7e-85 318.9 454 65.9
FAN08G0845 Fragaria x ananassa HOM05D006218 ORTHO05D007338 5.0e-84 316.2 515 62.1
PGSC0003DMG400021154 Solanum tuberosum HOM05D006218 ORTHO05D007338 3.2e-83 313.5 543 64.6
Rhsim10G0062900 Rhododendron simsii HOM05D006218 ORTHO05D007338 5.5e-83 312.8 424 47.9
AUR62000761 Chenopodium quinoa HOM05D006218 ORTHO05D007338 7.9e-82 308.9 523 58.1
DCAR_006421 Daucus carota HOM05D006218 ORTHO05D007338 5.1e-81 306.2 594 51.0
Cfa014110 Carpinus fangiana HOM05D006218 ORTHO05D007338 9.1e-78 295.4 553 60.0
RcHm_v2.0_Chr6g0271861 Rosa chinensis HOM05D006218 ORTHO05D007338 1.0e-76 292.0 313 55.6
HPP92_001390 Vanilla planifolia HOM05D006218 ORTHO05D007338 2.5e-75 287.3 506 44.1
RcHm_v2.0_Chr7g0215771 Rosa chinensis HOM05D006218 ORTHO05D007338 4.2e-75 286.6 313 55.0
SGA_v2.0_scaffold21G09648 Striga asiatica HOM05D006218 ORTHO05D007338 3.6e-74 283.5 502 56.4
AUR62005208 Chenopodium quinoa HOM05D006218 ORTHO05D007338 2.3e-73 280.8 460 58.7
Rhsim10G0063100 Rhododendron simsii HOM05D006218 ORTHO05D007338 3.3e-72 276.9 540 56.1
Ca_01194_v3 Cicer arietinum L. HOM05D006218 ORTHO05D007338 2.6e-69 267.3 535 33.5
FvH4_5g24880 Fragaria vesca HOM05D006218 ORTHO05D007338 2.6e-69 267.3 401 48.6
RcHm_v2.0_Chr6g0271871 Rosa chinensis HOM05D006218 ORTHO05D007338 4.5e-69 266.5 145 86.9
SalBow6G0752 Salvia bowleyana HOM05D006218 ORTHO05D007338 5.5e-67 259.6 558 31.7
RcHm_v2.0_Chr7g0215761 Rosa chinensis HOM05D006218 ORTHO05D007338 3.0e-65 253.8 145 83.4
Actinidia37914 Actinidia chinensis HOM05D006218 ORTHO05D007338 8.8e-65 252.3 520 56.2
Migut.O00315 Erythranthe guttata HOM05D006218 ORTHO05D007338 3.3e-64 250.4 539 50.5
Gohir.A05G178200 Gossypium hirsutum HOM05D006218 ORTHO05D007338 4.1e-62 243.4 550 52.4
TPR.G6568 Trifolium pratense HOM05D006218 ORTHO05D007338 2.2e-60 237.7 143 76.9
Aa31LG9G12480 Aethionema arabicum HOM05D006218 ORTHO05D007338 2.5e-59 234.2 542 49.8
Rhsim10G0066100 Rhododendron simsii HOM05D006218 ORTHO05D007338 5.5e-59 233.0 145 75.9
Manes.01G131700 Manihot esculenta HOM05D006218 ORTHO05D007338 4.0e-57 226.9 537 58.1
arahy.Tifrunner.gnm1.ann1.9489MQ Arachis hypogaea HOM05D006218 ORTHO05D007338 5.2e-57 226.5 537 51.8
TAR625G0531 Trochodendron aralioides HOM05D006218 ORTHO05D007338 1.2e-56 225.3 291 46.4
Aqoxy6G01612 Aquilegia oxysepala HOM05D006218 ORTHO05D007338 1.5e-56 224.9 541 50.3
Nn5g30994 Nelumbo nucifera HOM05D006218 ORTHO05D007338 2.6e-56 224.2 297 45.5
vmacro04416 Vaccinium macrocarpon HOM05D006218 ORTHO05D007338 2.6e-56 224.2 292 44.2
AL8G16360 Arabidopsis lyrata HOM05D006218 ORTHO05D007338 5.7e-56 223.0 508 52.4
Potri.005G247200 Populus trichocarpa HOM05D006218 ORTHO05D007338 2.8e-55 220.7 553 51.2
Sabra05G0191200 Salix brachista HOM05D006218 ORTHO05D007338 3.5e-53 213.8 544 52.0
MSTRG.24922 Avicennia marina HOM05D006218 ORTHO05D007338 7.7e-53 212.6 538 49.6
Carub.0008s0482 Capsella rubella HOM05D006218 ORTHO05D007338 1.7e-52 211.5 554 49.1
Cpa.g.sc428.8 Carica papaya HOM05D006218 ORTHO05D007338 2.9e-52 210.7 269 51.3
Lj1g0005723 Lotus japonicus HOM05D006218 ORTHO05D007338 8.5e-52 209.1 294 41.8
CDE02G2496 Ceratophyllum demersum HOM05D006218 ORTHO05D007338 1.9e-51 208.0 508 47.4
A06p47680 Brassica napus HOM05D006218 ORTHO05D007338 1.4e-49 201.8 512 51.2
THA.LOC104801948 Tarenaya hassleriana HOM05D006218 ORTHO05D007338 7.5e-48 196.1 549 48.6
BraA06t27636Z Brassica rapa HOM05D006218 ORTHO05D007338 6.3e-47 193.0 508 50.8
Nitab4.5_0004275g0030 Nicotiana tabacum HOM05D006218 ORTHO05D007338 1.8e-46 191.4 280 56.4
Nitab4.5_0003027g0060 Nicotiana tabacum HOM05D006218 ORTHO05D007338 5.4e-46 189.9 279 41.9
VMungo1080G0052 Vigna mungo HOM05D006218 ORTHO05D007338 5.4e-46 189.9 534 47.9
BcaC06g31676 Brassica carinata HOM05D006218 ORTHO05D007338 2.0e-45 188.0 512 48.8
Psat5g293680 Pisum sativum HOM05D006218 ORTHO05D007338 5.9e-45 186.4 548 35.6
Lalb_Chr03g0040821 Lupinus albus HOM05D006218 ORTHO05D007338 1.0e-44 185.7 542 47.2
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 3.8e-44 183.7 254 39.4
Phvul.002G162200 Phaseolus vulgaris HOM05D006218 ORTHO05D007338 6.6e-44 183.0 300 37.3
VMungo0251G2195 Vigna mungo HOM05D006218 ORTHO05D007338 2.5e-43 181.0 550 46.4
BolC7t43164H Brassica oleracea HOM05D006218 ORTHO05D007338 9.5e-43 179.1 554 47.8
CARHR179660 Cardamine hirsuta HOM05D006218 ORTHO05D007338 2.1e-42 177.9 256 40.2
BcaC06g34625 Brassica carinata HOM05D006218 ORTHO05D007338 4.7e-42 176.8 558 47.3
AT5G43820 Arabidopsis thaliana HOM05D006218 ORTHO05D007338 2.3e-41 174.5 278 37.8
CAN.G1202.7 Capsicum annuum HOM05D006218 ORTHO05D007338 4.4e-40 170.2 533 48.4
Cfa013418 Carpinus fangiana HOM05D000602 ORTHO05D007338 4.4e-40 170.2 354 32.8
C07p26360 Brassica napus HOM05D006218 ORTHO05D007338 7.5e-40 169.5 300 37.3
ECA247G3408 Erigeron canadensis HOM05D006218 ORTHO05D007338 2.9e-39 167.5 113 65.5
Eucgr.F01783 Eucalyptus grandis HOM05D006218 ORTHO05D007338 1.8e-38 164.9 522 47.5
HanXRQChr10g0293751 Helianthus annuus HOM05D006218 ORTHO05D007338 3.2e-38 164.1 287 35.2
Oeu013581.1 Olea europaea HOM05D006218 ORTHO05D007338 1.2e-37 162.2 289 75.4
Haze_21910 Corylus avellana HOM05D000602 ORTHO05D002639 2.0e-37 161.4 144 58.3
FvH4_5g25520 Fragaria vesca HOM05D006218 ORTHO05D007338 2.7e-37 161.0 90 84.4
THA.LOC104801950 Tarenaya hassleriana HOM05D006218 ORTHO05D007338 7.8e-37 159.5 190 47.9
FAN08G1989 Fragaria x ananassa HOM05D006218 ORTHO05D007338 3.0e-36 157.5 88 81.8
RcHm_v2.0_Chr7g0219831 Rosa chinensis HOM05D006218 ORTHO05D007338 2.5e-35 154.5 135 60.0
Rhsim10G0065400 Rhododendron simsii HOM05D006218 ORTHO05D007338 2.1e-34 151.4 255 38.8
unitig_46.g18024 Utricularia gibba HOM05D006218 ORTHO05D007338 2.6e-32 144.4 516 31.8
HanXRQChr14g0446721 Helianthus annuus HOM05D006218 ORTHO05D007338 4.4e-32 143.7 95 66.3
Rhsim07G0256800 Rhododendron simsii HOM05D006218 ORTHO05D007338 1.7e-28 131.7 201 39.8
ATR0807G041 Amborella trichopoda HOM05D006218 ORTHO05D007338 1.1e-27 129.0 414 50.7
HanXRQChr03g0064651 Helianthus annuus HOM05D006218 ORTHO05D007338 1.2e-26 125.6 80 71.2
RcHm_v2.0_Chr7g0217231 Rosa chinensis HOM05D006218 ORTHO05D007338 3.6e-26 124.0 158 44.9
SEGI_33548 Sequoiadendron giganteum HOM05D006218 ORTHO05D007338 1.2e-24 119.0 489 44.6
HPP92_028229 Vanilla planifolia HOM05D006218 ORTHO05D007338 2.9e-23 114.4 92 59.8
COL.COLO4_19322 Corchorus olitorius HOM05D006218 ORTHO05D007338 1.1e-22 112.5 117 50.4
Lsat_1_v5_gn_9_33960 Lactuca sativa HOM05D006218 ORTHO05D007338 3.9e-20 104.0 98 57.1
RcHm_v2.0_Chr7g0215901 Rosa chinensis HOM05D006218 ORTHO05D007338 5.1e-20 103.6 97 56.7
HanXRQChr15g0480181 Helianthus annuus HOM05D017474 ORTHO05D011180 2.5e-19 101.3 69 65.2
Os02g0304800 Oryza sativa ssp. japonica HOM05D006218 ORTHO05D007338 1.2e-18 99.0 215 30.7
FAN08G1583 Fragaria x ananassa HOM05D006218 ORTHO05D007338 1.4e-17 95.5 146 39.7
FAN08G1712 Fragaria x ananassa HOM05D006218 ORTHO05D007338 1.2e-16 92.4 93 53.8
Lj4P809T22 Lonicera japonica HOM05D006218 ORTHO05D007338 1.7e-15 88.6 302 41.4
Glyma.15G113600 Glycine max HOM05D006218 ORTHO05D007338 2.9e-15 87.8 51 78.4
FAN04G3064 Fragaria x ananassa HOM05D006218 ORTHO05D007338 1.9e-14 85.1 53 73.6
Lj4E809T0 Lonicera japonica HOM05D006218 ORTHO05D007338 1.6e-13 82.0 119 44.5
HPP92_001391 Vanilla planifolia HOM05D006218 ORTHO05D007338 1.6e-13 82.0 164 30.5
Cfa014108 Carpinus fangiana HOM05D000011 ORTHO05D002639 2.1e-13 81.6 102 51.0
Hma1.2p1_0612F.1_g188870 Hydrangea macrophylla HOM05D006218 ORTHO05D007338 2.7e-13 81.3 68 54.4
Zm00001eb135240 Zea mays HOM05D006218 ORTHO05D007338 6.6e-12 76.6 207 25.6
HPP92_012639 Vanilla planifolia HOM05D006218 ORTHO05D007338 1.1e-11 75.9 121 33.9
FAN13G2474 Fragaria x ananassa HOM05D002007 ORTHO05D000355 8.9e-09 66.2 43 67.4
Oeu014607.1 Olea europaea HOM05D007173 ORTHO05D009151 2.6e-08 64.7 117 29.9
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 3.4e-08 64.3 102 30.4
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 7.6e-08 63.2 102 31.4
Sed0008418 Sechium edule HOM05D007173 ORTHO05D009151 7.6e-08 63.2 115 30.4
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 9.9e-08 62.8 102 31.4
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 1.3e-07 62.4 102 31.4
Nitab4.5_0000923g0180 Nicotiana tabacum HOM05D007173 ORTHO05D009151 1.7e-07 62.0 102 30.4
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 2.2e-07 61.6 102 30.4
CiPaw.03G118400 Carya illinoinensis HOM05D007173 ORTHO05D009151 3.8e-07 60.8 115 27.8
QL10p041753 Quercus lobata HOM05D007173 ORTHO05D009151 4.9e-07 60.5 115 27.8
SalBow7G3017 Salvia bowleyana HOM05D007173 ORTHO05D009151 1.4e-06 58.9 114 28.9
Lj3g0003939 Lotus japonicus HOM05D007173 ORTHO05D009151 1.9e-06 58.5 115 27.8
Nn6g33908 Nelumbo nucifera HOM05D007173 ORTHO05D009151 1.9e-06 58.5 116 26.7
Peaxi162Scf00231g00042 Petunia axillaris HOM05D007173 ORTHO05D009151 1.9e-06 58.5 102 30.4
CsaV3_4G030520 Cucumis sativus L. HOM05D007173 ORTHO05D009151 2.4e-06 58.2 115 29.6
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 4.2e-06 57.4 107 26.2
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 4.2e-06 57.4 115 27.8
arahy.Tifrunner.gnm1.ann1.51T3ZK Arachis hypogaea HOM05D007173 ORTHO05D009151 5.4e-06 57.0 115 27.8
arahy.Tifrunner.gnm1.ann1.5SK0BH Arachis hypogaea HOM05D007173 ORTHO05D009151 5.4e-06 57.0 115 27.8
Cfa007278 Carpinus fangiana HOM05D007173 ORTHO05D009151 7.1e-06 56.6 114 26.3
Ca_16602_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 7.1e-06 56.6 111 26.1
ClCG08G005980 Citrullus lanatus HOM05D000424 ORTHO05D000355 9.3e-06 56.2 103 27.2
MELO3C010658.2 Cucumis melo HOM05D000424 ORTHO05D000355 9.3e-06 56.2 111 26.1
Migut.D00798 Erythranthe guttata HOM05D007173 ORTHO05D009151 9.3e-06 56.2 116 25.9
Peaxi162Scf00000g00292 Petunia axillaris HOM05D000424 ORTHO05D000355 9.3e-06 56.2 108 30.6


User provided reference genes

Program Settings