Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G008700 Prunus persica HOM05D007018 ORTHO05D008887 8.7e-102 373.6 187 100.0
RcHm_v2.0_Chr7g0215941 Rosa chinensis HOM05D007018 ORTHO05D008887 1.3e-81 306.6 184 82.1
MD06G1006600 Malus domestica HOM05D007018 ORTHO05D008887 3.9e-78 295.0 184 82.6
FAN18G2290 Fragaria x ananassa HOM05D007018 ORTHO05D008887 2.4e-75 285.8 185 78.4
FAN04G0342 Fragaria x ananassa HOM05D007018 ORTHO05D008887 4.1e-75 285.0 185 77.8
FvH4_5g25650 Fragaria vesca HOM05D007018 ORTHO05D008887 5.3e-75 284.6 185 77.8
Actinidia17062 Actinidia chinensis HOM05D007018 ORTHO05D008887 1.2e-74 283.5 181 77.9
Haze_22833 Corylus avellana HOM05D007018 ORTHO05D008887 2.6e-74 282.3 178 78.1
FAN13G0505 Fragaria x ananassa HOM05D007018 ORTHO05D008887 5.9e-74 281.2 185 76.8
FAN08G2873 Fragaria x ananassa HOM05D007018 ORTHO05D008887 1.7e-73 279.6 185 76.2
Dinv31968 Davidia involucrata HOM05D007018 ORTHO05D008887 3.8e-73 278.5 183 76.0
Potri.005G253600 Populus trichocarpa HOM05D007018 ORTHO05D008887 5.0e-73 278.1 178 74.7
GSVIVG01013398001 Vitis vinifera HOM05D007018 ORTHO05D008887 5.0e-73 278.1 178 76.4
CiPaw.08G075600 Carya illinoinensis HOM05D007018 ORTHO05D008887 6.5e-73 277.7 178 75.8
Sc26g0004680 Simmondsia chinensis HOM05D007018 ORTHO05D008887 4.2e-72 275.0 182 76.4
Nn5g31007 Nelumbo nucifera HOM05D007018 ORTHO05D008887 1.2e-71 273.5 172 76.7
QL02p015150 Quercus lobata HOM05D007018 ORTHO05D008887 4.7e-71 271.6 184 71.7
TAR625G1418 Trochodendron aralioides HOM05D007018 ORTHO05D008887 4.7e-71 271.6 182 74.2
Ciclev10002616m.g Citrus clementina HOM05D007018 ORTHO05D008887 6.1e-71 271.2 181 73.5
Sabra05G0196700 Salix brachista HOM05D007018 ORTHO05D008887 7.9e-71 270.8 182 72.5
CSS0014140 Camellia sinensis var. sinensis HOM05D007018 ORTHO05D008887 3.0e-70 268.9 181 73.5
TAR633G0270 Trochodendron aralioides HOM05D007018 ORTHO05D008887 6.7e-70 267.7 182 73.1
CANSAT25G2394 Cannabis sativa HOM05D007018 ORTHO05D008887 9.7e-69 263.8 184 73.9
TWI36G0062 Tripterygium wilfordii HOM05D007018 ORTHO05D008887 9.7e-69 263.8 182 74.2
Atru.chr13.101 Acer truncatum HOM05D007018 ORTHO05D008887 1.3e-68 263.5 165 77.0
Sabra02G0005900 Salix brachista HOM05D007018 ORTHO05D008887 1.7e-68 263.1 178 69.7
Gohir.D01G088700 Gossypium hirsutum HOM05D007018 ORTHO05D008887 2.2e-68 262.7 161 78.9
Lsat_1_v5_gn_8_27360 Lactuca sativa HOM05D007018 ORTHO05D008887 2.8e-68 262.3 177 71.2
Lj4A809G49 Lonicera japonica HOM05D007018 ORTHO05D008887 3.7e-68 261.9 178 74.2
Gohir.A01G103400 Gossypium hirsutum HOM05D007018 ORTHO05D008887 4.8e-68 261.5 167 76.6
Gorai.002G114400 Gossypium raimondii HOM05D007018 ORTHO05D008887 4.8e-68 261.5 161 78.9
CsaV3_4G037440 Cucumis sativus L. HOM05D007018 ORTHO05D008887 1.1e-67 260.4 178 74.7
Duzib093G1136 Durio zibethinus HOM05D007018 ORTHO05D008887 1.1e-67 260.4 178 73.6
Hma1.2p1_0699F.1_g205550 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 1.4e-67 260.0 178 69.1
MELO3C017041.2 Cucumis melo HOM05D007018 ORTHO05D008887 1.8e-67 259.6 178 74.7
Aqoxy6G01596 Aquilegia oxysepala HOM05D007018 ORTHO05D008887 4.1e-67 258.5 164 74.4
Sed0005335 Sechium edule HOM05D007018 ORTHO05D008887 9.1e-67 257.3 178 73.6
PSO541G4149 Papaver somniferum HOM05D007018 ORTHO05D008887 3.5e-66 255.4 182 69.8
ECA233G6114 Erigeron canadensis HOM05D000716 ORTHO05D002658 4.5e-66 255.0 176 69.3
Glyma.06G016200 Glycine max HOM05D007018 ORTHO05D008887 7.7e-66 254.2 179 72.1
Rhsim06G0005000 Rhododendron simsii HOM05D007018 ORTHO05D008887 1.7e-65 253.1 171 73.1
SGA_v2.0_scaffold366G50030 Striga asiatica HOM05D007018 ORTHO05D008887 1.7e-65 253.1 188 66.0
Lj1g0008636 Lotus japonicus HOM05D007018 ORTHO05D008887 5.0e-65 251.5 178 71.3
Migut.C00367 Erythranthe guttata HOM05D007018 ORTHO05D008887 1.1e-64 250.4 182 67.6
Lalb_Chr11g0061471 Lupinus albus HOM05D007018 ORTHO05D008887 3.2e-64 248.8 178 70.8
CDE05G1284 Ceratophyllum demersum HOM05D007018 ORTHO05D008887 4.2e-64 248.4 159 74.2
Eucgr.F01791 Eucalyptus grandis HOM05D007018 ORTHO05D008887 5.5e-64 248.1 178 66.9
MSTRG.993 Avicennia marina HOM05D007018 ORTHO05D008887 7.2e-64 247.7 178 69.1
HanXRQChr08g0216381 Helianthus annuus HOM05D007018 ORTHO05D008887 9.4e-64 247.3 183 67.8
DCAR_022937 Daucus carota HOM05D007018 ORTHO05D008887 2.1e-63 246.1 174 69.0
ClCG11G018850 Citrullus lanatus HOM05D007018 ORTHO05D008887 2.7e-63 245.7 187 70.1
VMungo1309G2102 Vigna mungo HOM05D007018 ORTHO05D008887 6.1e-63 244.6 177 70.1
TPR.G38107 Trifolium pratense HOM05D007018 ORTHO05D008887 8.0e-63 244.2 183 66.7
CAN.G311.135 Capsicum annuum HOM05D007018 ORTHO05D008887 1.8e-62 243.0 187 65.8
PGR083G2064 Punica granatum HOM05D007018 ORTHO05D008887 1.8e-62 243.0 179 67.6
Phvul.009G006300 Phaseolus vulgaris HOM05D007018 ORTHO05D008887 2.6e-61 239.2 190 65.8
Psat5g009640 Pisum sativum HOM05D007018 ORTHO05D008887 1.3e-60 236.9 160 71.9
Cc04_g01910 Coffea canephora HOM05D007018 ORTHO05D008887 2.2e-60 236.1 166 66.9
Sp1g32030 Schrenkiella parvula HOM05D007018 ORTHO05D008887 2.2e-60 236.1 165 68.5
Medtr3g115880 Medicago truncatula HOM05D007018 ORTHO05D008887 1.1e-59 233.8 161 69.6
unitig_749.g13890 Utricularia gibba HOM05D007018 ORTHO05D008887 7.0e-59 231.1 179 66.5
vmacro21785 Vaccinium macrocarpon HOM05D007018 ORTHO05D008887 7.0e-59 231.1 233 53.2
Carub.0001s3428 Capsella rubella HOM05D007018 ORTHO05D008887 1.2e-58 230.3 167 64.7
Peaxi162Scf00680g00121 Petunia axillaris HOM05D007018 ORTHO05D008887 1.2e-58 230.3 183 62.8
PGSC0003DMG400009913 Solanum tuberosum HOM05D007018 ORTHO05D008887 1.6e-58 229.9 185 62.7
Sopen04g036220 Solanum pennellii HOM05D007018 ORTHO05D008887 2.0e-58 229.6 168 67.3
AL1G51350 Arabidopsis lyrata HOM05D007018 ORTHO05D008887 2.6e-58 229.2 159 67.9
arahy.Tifrunner.gnm1.ann1.R1PR4F Arachis hypogaea HOM05D007018 ORTHO05D008887 3.5e-58 228.8 187 65.2
BcaB04g17781 Brassica carinata HOM05D007018 ORTHO05D008887 3.5e-58 228.8 165 66.7
arahy.Tifrunner.gnm1.ann1.UKS4G3 Arachis hypogaea HOM05D007018 ORTHO05D008887 4.5e-58 228.4 187 65.2
Solyc04g082590.3 Solanum lycopersicum HOM05D007018 ORTHO05D008887 4.5e-58 228.4 168 67.3
A08p07720 Brassica napus HOM05D007018 ORTHO05D008887 5.9e-58 228.0 165 65.5
BraA08t32785Z Brassica rapa HOM05D007018 ORTHO05D008887 5.9e-58 228.0 165 65.5
BcaC07g37460 Brassica carinata HOM05D007018 ORTHO05D008887 1.3e-57 226.9 165 64.8
C08p09340 Brassica napus HOM05D007018 ORTHO05D008887 1.3e-57 226.9 165 64.8
BolC8t47779H Brassica oleracea HOM05D007018 ORTHO05D008887 1.7e-57 226.5 165 64.8
Thhalv10004993m.g Eutrema salsugineum HOM05D007018 ORTHO05D008887 1.7e-57 226.5 159 66.0
AT1G42480 Arabidopsis thaliana HOM05D007018 ORTHO05D008887 2.2e-57 226.1 178 61.2
Manes.18G003600 Manihot esculenta HOM05D007018 ORTHO05D008887 2.9e-57 225.7 185 63.8
CARHR292440 Cardamine hirsuta HOM05D007018 ORTHO05D008887 8.5e-57 224.2 165 65.5
HPP92_012484 Vanilla planifolia HOM05D007018 ORTHO05D008887 2.5e-56 222.6 177 61.0
THA.LOC104806916 Tarenaya hassleriana HOM05D007018 ORTHO05D008887 7.2e-56 221.1 161 65.2
Hma1.2p1_0699F.1_g205540 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 8.0e-55 217.6 144 70.8
ATR0807G118 Amborella trichopoda HOM05D007018 ORTHO05D008887 4.0e-54 215.3 134 78.4
Actinidia15510 Actinidia chinensis HOM05D007018 ORTHO05D008887 2.6e-53 212.6 136 75.7
Thecc.08G062700 Theobroma cacao HOM05D007018 ORTHO05D008887 4.4e-53 211.8 122 82.0
Os02g0117200 Oryza sativa ssp. japonica HOM05D007018 ORTHO05D008887 7.5e-53 211.1 163 63.2
Zm00001eb209390 Zea mays HOM05D007018 ORTHO05D008887 3.7e-52 208.8 172 59.9
Aa31sc108G20 Aethionema arabicum HOM05D007018 ORTHO05D008887 4.8e-52 208.4 165 59.4
COL.COLO4_37754 Corchorus olitorius HOM05D007018 ORTHO05D008887 4.8e-52 208.4 136 73.5
SalBow7G2934 Salvia bowleyana HOM05D007018 ORTHO05D008887 8.3e-52 207.6 134 74.6
Manes.13G069000 Manihot esculenta HOM05D007018 ORTHO05D008887 1.5e-48 196.8 137 71.5
AUR62035144 Chenopodium quinoa HOM05D007018 ORTHO05D008887 5.4e-43 178.3 172 57.6
Prupe.5G008600 Prunus persica HOM05D007018 ORTHO05D008887 7.2e-40 167.9 83 95.2
EL10Ac1g01910 Beta vulgaris HOM05D007018 ORTHO05D008887 1.2e-39 167.2 161 57.8
Pp3c3_21490 Physcomitrium patens HOM05D007018 ORTHO05D008887 1.2e-39 167.2 171 49.7
AUR62042577 Chenopodium quinoa HOM05D007018 ORTHO05D008887 2.8e-39 166.0 171 55.6
Ca_15400_v3 Cicer arietinum L. HOM05D007018 ORTHO05D008887 1.0e-38 164.1 126 61.1
HPP92_001689 Vanilla planifolia HOM05D007018 ORTHO05D008887 2.9e-36 156.0 163 46.0
Nitab4.5_0009646g0030 Nicotiana tabacum HOM05D007018 ORTHO05D008887 6.4e-36 154.8 200 47.0
Glyma.04G016200 Glycine max HOM05D007018 ORTHO05D008887 1.6e-31 140.2 101 70.3
Cre16.g661700 Chlamydomonas reinhardtii HOM05D007018 ORTHO05D008887 1.2e-26 124.0 171 43.9
Hund05090 Selenicereus undatus HOM05D007018 ORTHO05D008887 1.6e-26 123.6 123 52.0
Hma1.2p1_0699F.1_g205580 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 3.9e-25 119.0 87 63.2
AUR62042580 Chenopodium quinoa HOM05D007018 ORTHO05D008887 1.5e-24 117.1 172 45.3
MCO14G410 Micromonas commoda HOM05D007018 ORTHO05D008887 1.8e-22 110.2 159 37.7
Potri.002G007601 Populus trichocarpa HOM05D007018 ORTHO05D008887 1.2e-21 107.5 73 72.6
AagrBONN_evm.TU.Sc2ySwM_228.4250 Anthoceros agrestis HOM05D007018 ORTHO05D008887 1.2e-18 97.4 74 59.5
PRCOL_00006317 Prasinoderma coloniale HOM05D007018 ORTHO05D008887 1.2e-18 97.4 138 39.9
SEGI_04341 Sequoiadendron giganteum HOM05D007018 ORTHO05D008887 1.1e-14 84.3 68 58.8
SHI07963 Sapria himalayana HOM05D007018 ORTHO05D008887 3.3e-08 62.8 40 72.5
HPP92_012557 Vanilla planifolia HOM05D007018 ORTHO05D008887 2.1e-07 60.1 78 42.3
SHI07962 Sapria himalayana HOM05D007018 ORTHO05D008887 8.1e-07 58.2 36 75.0


User provided reference genes

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