Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 1.8e-104 382.5 183 100.0
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 1.7e-86 322.8 180 87.2
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.6e-84 316.2 173 86.7
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 2.1e-84 315.8 171 86.5
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 1.0e-83 313.5 193 78.2
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 4.9e-81 304.7 179 81.0
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 1.8e-80 302.8 183 79.8
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 2.4e-80 302.4 189 78.8
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 4.1e-80 301.6 185 80.5
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 5.4e-80 301.2 172 83.1
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 5.4e-80 301.2 172 83.1
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 7.0e-80 300.8 172 83.1
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 4.5e-79 298.1 180 77.8
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 4.5e-79 298.1 183 77.0
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.7e-78 296.2 172 82.0
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 2.9e-78 295.4 216 69.4
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 3.8e-78 295.0 191 75.4
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 8.6e-78 293.9 182 78.6
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 1.9e-77 292.7 147 90.5
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 2.5e-77 292.4 150 87.3
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 5.6e-77 291.2 183 77.0
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 9.5e-77 290.4 161 80.7
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 9.5e-77 290.4 183 76.0
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 1.2e-76 290.0 165 81.8
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 1.6e-76 289.7 163 82.2
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 1.6e-76 289.7 146 88.4
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.6e-76 289.7 184 75.0
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 2.1e-76 289.3 177 80.2
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 2.1e-76 289.3 162 83.3
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 3.6e-76 288.5 176 79.5
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 4.7e-76 288.1 163 81.6
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 4.7e-76 288.1 186 74.2
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 4.7e-76 288.1 173 78.6
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 6.1e-76 287.7 163 81.6
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 6.1e-76 287.7 177 78.5
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 8.0e-76 287.3 180 75.0
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 1.0e-75 287.0 148 86.5
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 1.4e-75 286.6 172 77.9
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 1.4e-75 286.6 185 74.6
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 1.4e-75 286.6 174 76.4
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 2.3e-75 285.8 173 79.2
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 2.3e-75 285.8 170 77.6
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 3.0e-75 285.4 180 75.0
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 3.0e-75 285.4 180 75.0
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 5.2e-75 284.6 171 81.3
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 5.2e-75 284.6 162 81.5
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 5.2e-75 284.6 172 76.2
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 5.2e-75 284.6 158 82.9
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 6.8e-75 284.3 162 82.1
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 8.9e-75 283.9 156 82.7
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 8.9e-75 283.9 156 82.7
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.2e-74 283.5 158 82.3
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 1.2e-74 283.5 158 82.3
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 1.2e-74 283.5 162 82.1
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 1.2e-74 283.5 172 76.2
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 2.6e-74 282.3 186 72.6
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 4.4e-74 281.6 164 78.7
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 4.4e-74 281.6 158 81.6
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 4.4e-74 281.6 146 85.6
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 4.4e-74 281.6 175 77.1
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 4.4e-74 281.6 147 86.4
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 5.8e-74 281.2 159 81.1
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 5.8e-74 281.2 167 79.0
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 7.5e-74 280.8 181 75.1
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 1.3e-73 280.0 177 76.3
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 1.7e-73 279.6 149 83.9
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 1.7e-73 279.6 157 80.9
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 2.2e-73 279.3 158 80.4
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 2.2e-73 279.3 162 79.0
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 2.9e-73 278.9 177 75.7
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 2.9e-73 278.9 145 84.1
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 3.7e-73 278.5 177 75.7
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 6.4e-73 277.7 177 75.7
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 6.4e-73 277.7 172 76.2
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 1.8e-72 276.2 233 62.7
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 3.2e-72 275.4 172 76.2
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 3.2e-72 275.4 156 80.1
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 1.7e-70 269.6 168 73.2
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 5.0e-70 268.1 157 75.8
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.2e-68 263.5 141 80.1
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.6e-68 263.1 142 82.4
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 4.0e-67 258.5 173 69.4
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 6.8e-67 257.7 143 79.7
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 2.6e-66 255.8 142 77.5
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 8.3e-65 250.8 169 68.0
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 5.4e-64 248.1 150 79.3
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 7.0e-64 247.7 143 74.8
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.2e-63 246.9 155 75.5
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 2.0e-63 246.1 140 77.1
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 3.5e-63 245.4 150 76.0
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 7.8e-63 244.2 158 75.3
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 3.0e-62 242.3 124 88.7
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 3.9e-62 241.9 143 72.7
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 5.0e-62 241.5 152 75.0
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 6.6e-62 241.1 140 71.4
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 5.6e-61 238.0 127 84.3
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 9.5e-61 237.3 127 82.7
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 1.2e-60 236.9 153 72.5
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.2e-60 236.9 120 91.7
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 1.6e-60 236.5 126 84.1
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 2.8e-60 235.7 119 86.6
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 1.8e-59 233.0 140 77.9
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 6.8e-59 231.1 155 72.9
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 1.7e-57 226.5 166 67.5
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 1.9e-56 223.0 151 72.2
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.5e-53 213.4 140 65.0
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 4.7e-52 208.4 147 73.5
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 1.8e-51 206.5 123 79.7
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 2.4e-51 206.1 128 74.2
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 4.6e-47 191.8 185 56.8
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 6.0e-47 191.4 99 83.8
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.7e-41 173.3 168 51.2
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 2.9e-41 172.6 148 63.5
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 3.8e-41 172.2 89 88.8
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.1e-40 170.6 151 54.3
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.4e-40 170.2 176 50.0
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 9.3e-40 167.5 116 69.0
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.6e-39 166.8 87 85.1
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.3e-38 163.7 140 55.7
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 4.8e-36 155.2 166 47.0
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.8e-35 153.3 163 45.4
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 1.1e-32 144.1 136 52.2
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.7e-31 139.4 72 91.7
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 2.7e-31 139.4 159 49.1
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.5e-29 132.9 70 90.0
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 2.5e-29 132.9 85 69.4
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 5.8e-26 121.7 168 42.3
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 7.6e-26 121.3 59 86.4
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 3.9e-22 109.0 53 88.7
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 3.9e-22 109.0 118 45.8
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 2.4e-19 99.8 172 40.7
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 4.2e-16 89.0 77 58.4
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 2.5e-13 79.7 105 45.7
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 1.5e-10 70.5 75 48.0
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 3.4e-10 69.3 141 31.2
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 1.0e-09 67.8 31 90.3
MCO09G751 Micromonas commoda HOM05D005558 ORTHO05D034498 6.5e-09 65.1 143 30.1
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 2.1e-07 60.1 157 30.6
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 1.0e-06 57.8 51 49.0
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 5.1e-06 55.5 83 36.1


User provided reference genes

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