Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G288100 Prunus persica HOM05D007044 ORTHO05D008981 4.3e-210 734.6 418 100.0
MD00G1030500 Malus domestica HOM05D007044 ORTHO05D008981 1.9e-112 410.2 408 64.7
FAN23G2791 Fragaria x ananassa HOM05D007044 ORTHO05D008981 1.6e-103 380.6 410 55.1
FAN26G2478 Fragaria x ananassa HOM05D007044 ORTHO05D008981 1.6e-103 380.6 404 56.2
FvH4_1g25860 Fragaria vesca HOM05D007044 ORTHO05D008981 2.1e-103 380.2 404 58.2
FAN19G0897 Fragaria x ananassa HOM05D007044 ORTHO05D008981 2.1e-103 380.2 404 58.2
TAR381G1118 Trochodendron aralioides HOM05D007044 ORTHO05D008981 5.3e-99 365.5 403 51.9
Cfa020928 Carpinus fangiana HOM05D007044 ORTHO05D008981 3.4e-98 362.8 406 50.0
Haze_19360 Corylus avellana HOM05D007044 ORTHO05D008981 7.6e-98 361.7 410 49.8
TWI75G1760 Tripterygium wilfordii HOM05D007044 ORTHO05D008981 1.0e-97 361.3 403 49.6
Ciclev10027575m.g Citrus clementina HOM05D007044 ORTHO05D008981 5.0e-97 359.0 418 49.8
Actinidia19938 Actinidia chinensis HOM05D007044 ORTHO05D008981 1.9e-96 357.1 404 51.7
Duzib147G1221 Durio zibethinus HOM05D007044 ORTHO05D008981 4.2e-96 355.9 403 51.1
vmacro05323 Vaccinium macrocarpon HOM05D007044 ORTHO05D008981 1.2e-95 354.4 411 50.6
MELO3C024642.2 Cucumis melo HOM05D007044 ORTHO05D008981 2.1e-95 353.6 408 50.2
THA.LOC104827319 Tarenaya hassleriana HOM05D007044 ORTHO05D008981 3.6e-95 352.8 403 49.6
Thecc.01G145800 Theobroma cacao HOM05D007044 ORTHO05D008981 3.6e-95 352.8 403 51.1
Manes.13G154300 Manihot esculenta HOM05D007044 ORTHO05D008981 4.6e-95 352.4 408 50.7
GSVIVG01000252001 Vitis vinifera HOM05D007044 ORTHO05D008981 4.6e-95 352.4 403 49.9
Dinv05984 Davidia involucrata HOM05D007044 ORTHO05D008981 6.1e-95 352.1 403 52.6
Phvul.007G114400 Phaseolus vulgaris HOM05D007044 ORTHO05D008981 2.3e-94 350.1 411 49.1
Carub.0005s2331 Capsella rubella HOM05D007044 ORTHO05D008981 3.0e-94 349.7 409 52.8
Hma1.2p1_0050F.1_g029110 Hydrangea macrophylla HOM05D007044 ORTHO05D008981 8.7e-94 348.2 412 49.0
Lalb_Chr06g0168751 Lupinus albus HOM05D007044 ORTHO05D008981 1.1e-93 347.8 403 50.6
AUR62000601 Chenopodium quinoa HOM05D007044 ORTHO05D008981 4.3e-93 345.9 410 48.8
Sp5g05990 Schrenkiella parvula HOM05D007044 ORTHO05D008981 4.3e-93 345.9 405 51.4
arahy.Tifrunner.gnm1.ann1.H6ML7T Arachis hypogaea HOM05D007044 ORTHO05D008981 9.7e-93 344.7 420 48.6
Psat6g111960 Pisum sativum HOM05D007044 ORTHO05D008981 9.7e-93 344.7 403 49.1
Ca_09906_v3 Cicer arietinum L. HOM05D007044 ORTHO05D008981 2.2e-92 343.6 415 48.9
SGA_v2.0_scaffold13G06483 Striga asiatica HOM05D007044 ORTHO05D008981 2.2e-92 343.6 415 48.0
VMungo0720G2193 Vigna mungo HOM05D007044 ORTHO05D008981 2.2e-92 343.6 405 48.9
Glyma.20G214500 Glycine max HOM05D007044 ORTHO05D008981 2.8e-92 343.2 403 49.1
EL10Ac4g09721 Beta vulgaris HOM05D007044 ORTHO05D008981 1.1e-91 341.3 409 48.7
Medtr1g077040 Medicago truncatula HOM05D007044 ORTHO05D008981 2.4e-91 340.1 415 49.4
Ah.02g118170 Amaranthus hybridus HOM05D007044 ORTHO05D008981 6.9e-91 338.6 403 48.4
arahy.Tifrunner.gnm1.ann1.B8MN22 Arachis hypogaea HOM05D007044 ORTHO05D008981 6.9e-91 338.6 428 47.4
PGR119G1191 Punica granatum HOM05D007044 ORTHO05D008981 1.5e-90 337.4 409 49.9
PSO782G5479 Papaver somniferum HOM05D007044 ORTHO05D008981 2.6e-90 336.7 406 48.5
Sed0003346 Sechium edule HOM05D007044 ORTHO05D008981 4.5e-90 335.9 403 48.9
TPR.G16624 Trifolium pratense HOM05D007044 ORTHO05D008981 5.9e-90 335.5 399 52.4
Aqoxy6G00095 Aquilegia oxysepala HOM05D007044 ORTHO05D008981 1.3e-89 334.3 406 47.3
Gorai.012G045900 Gossypium raimondii HOM05D007044 ORTHO05D008981 1.7e-89 334.0 403 48.4
Lj7A490G62 Lonicera japonica HOM05D007044 ORTHO05D008981 2.9e-89 333.2 403 48.9
AL5G37940 Arabidopsis lyrata HOM05D007044 ORTHO05D008981 3.8e-89 332.8 406 49.3
ClCG04G002800 Citrullus lanatus HOM05D007044 ORTHO05D008981 6.5e-89 332.0 431 46.9
Gohir.A05G375000 Gossypium hirsutum HOM05D007044 ORTHO05D008981 1.1e-88 331.3 403 47.9
Lj5g0011072 Lotus japonicus HOM05D007044 ORTHO05D008981 3.2e-88 329.7 403 47.9
CSS0017775 Camellia sinensis var. sinensis HOM05D007044 ORTHO05D008981 4.2e-88 329.3 388 49.7
AUR62006952 Chenopodium quinoa HOM05D007044 ORTHO05D008981 4.2e-88 329.3 410 47.1
Gohir.D04G040700 Gossypium hirsutum HOM05D007044 ORTHO05D008981 4.2e-88 329.3 403 47.9
Migut.F00913 Erythranthe guttata HOM05D007044 ORTHO05D008981 1.2e-87 327.8 416 45.4
AT3G56570 Arabidopsis thaliana HOM05D007044 ORTHO05D008981 1.6e-87 327.4 410 52.0
PSO170G6074 Papaver somniferum HOM05D007044 ORTHO05D008981 1.6e-87 327.4 406 46.6
MBI03_g18677_MAGBIO Magnolia biondii HOM05D007044 ORTHO05D008981 4.6e-87 325.9 421 47.5
Aa31LG10G11390 Aethionema arabicum HOM05D007044 ORTHO05D008981 3.9e-86 322.8 415 53.3
Lsat_1_v5_gn_2_40340 Lactuca sativa HOM05D007044 ORTHO05D008981 6.7e-86 322.0 406 48.8
SalBow6G1252 Salvia bowleyana HOM05D007044 ORTHO05D008981 2.0e-85 320.5 422 44.5
HPP92_022004 Vanilla planifolia HOM05D007044 ORTHO05D008981 2.0e-85 320.5 402 47.0
CAN.G10.5 Capsicum annuum HOM05D007044 ORTHO05D008981 1.4e-83 314.3 403 51.1
Nitab4.5_0001785g0040 Nicotiana tabacum HOM05D007044 ORTHO05D008981 2.4e-83 313.5 408 52.5
Sabra04G0082400 Salix brachista HOM05D007044 ORTHO05D008981 9.1e-83 311.6 392 48.2
Zm00001eb366280 Zea mays HOM05D007044 ORTHO05D008981 2.2e-81 307.0 403 45.2
Os01g0879500 Oryza sativa ssp. japonica HOM05D007044 ORTHO05D008981 1.4e-80 304.3 405 44.7
BraA09t40398Z Brassica rapa HOM05D007044 ORTHO05D008981 1.6e-79 300.8 411 46.2
ATR1136G039 Amborella trichopoda HOM05D007044 ORTHO05D008981 2.7e-79 300.1 403 43.2
SEGI_35790 Sequoiadendron giganteum HOM05D007044 ORTHO05D008981 4.7e-79 299.3 404 45.3
C08p31830 Brassica napus HOM05D007044 ORTHO05D008981 2.3e-78 297.0 408 44.1
Oeu063700.1 Olea europaea HOM05D007044 ORTHO05D008981 3.0e-78 296.6 459 41.4
unitig_61.g26193 Utricularia gibba HOM05D007044 ORTHO05D008981 6.7e-78 295.4 440 41.4
BcaC07g39965 Brassica carinata HOM05D007044 ORTHO05D008981 1.1e-77 294.7 407 45.9
BolC8t50802H Brassica oleracea HOM05D007044 ORTHO05D008981 3.3e-77 293.1 406 45.8
A09p49450 Brassica napus HOM05D007044 ORTHO05D008981 5.3e-75 285.8 401 45.9
SMO169G0173 Selaginella moellendorffii HOM05D007044 ORTHO05D008981 2.0e-74 283.9 402 43.8
BcaC07g40141 Brassica carinata HOM05D007044 ORTHO05D008981 2.9e-73 280.0 392 45.4
HanXRQChr10g0285851 Helianthus annuus HOM05D007044 ORTHO05D008981 2.7e-71 273.5 351 46.2
RcHm_v2.0_Chr3g0485001 Rosa chinensis HOM05D007044 ORTHO05D008981 1.0e-65 255.0 331 58.3
Hund07191 Selenicereus undatus HOM05D007044 ORTHO05D008981 4.5e-58 229.6 265 46.8
CiPaw.15G185700 Carya illinoinensis HOM05D007044 ORTHO05D008981 1.3e-57 228.0 268 48.5
Pp3c8_4410 Physcomitrium patens HOM05D007044 ORTHO05D008981 2.3e-57 227.3 360 40.3
Hma1.2p1_0050F.1_g029120 Hydrangea macrophylla HOM05D007044 ORTHO05D008981 2.9e-57 226.9 269 47.6
Atru.chr3.1445 Acer truncatum HOM05D007044 ORTHO05D008981 5.0e-57 226.1 272 47.1
Sc16g0009910 Simmondsia chinensis HOM05D007044 ORTHO05D008981 1.9e-56 224.2 272 45.2
Thhalv10006013m.g Eutrema salsugineum HOM05D007044 ORTHO05D008981 5.5e-56 222.6 269 50.2
ECA240G2444 Erigeron canadensis HOM05D007044 ORTHO05D008981 1.2e-55 221.5 274 45.3
Nn3g20178 Nelumbo nucifera HOM05D007044 ORTHO05D008981 2.1e-55 220.7 310 42.6
Rhsim10G0120300 Rhododendron simsii HOM05D007044 ORTHO05D008981 2.8e-55 220.3 265 47.9
QL10p037666 Quercus lobata HOM05D007044 ORTHO05D008981 8.9e-54 215.3 210 57.6
Cpa.g.sc138.45 Carica papaya HOM05D007044 ORTHO05D008981 3.4e-53 213.4 211 55.9
Mapoly0010s0148 Marchantia polymorpha HOM05D007044 ORTHO05D008981 5.7e-53 212.6 593 29.2
Potri.004G135700 Populus trichocarpa HOM05D007044 ORTHO05D008981 5.7e-53 212.6 273 46.2
CARHR166680 Cardamine hirsuta HOM05D007044 ORTHO05D008981 2.2e-52 210.7 267 44.6
CsaV3_4G029950 Cucumis sativus L. HOM05D007044 ORTHO05D008981 2.8e-52 210.3 262 46.2
PGSC0003DMG400004247 Solanum tuberosum HOM05D007044 ORTHO05D008981 2.6e-45 187.2 212 47.6
Eucgr.I00024 Eucalyptus grandis HOM05D007044 ORTHO05D008981 9.8e-37 158.7 202 45.0
AagrBONN_evm.TU.Sc2ySwM_368.1798 Anthoceros agrestis HOM05D007044 ORTHO05D008981 1.3e-36 158.3 237 38.4
CDE06G2742 Ceratophyllum demersum HOM05D007044 ORTHO05D008981 8.3e-36 155.6 200 45.5
QL10p037675 Quercus lobata HOM05D007044 ORTHO05D008981 5.4e-35 152.9 192 47.4
FAN28G0850 Fragaria x ananassa HOM05D007044 ORTHO05D008981 4.6e-34 149.8 268 39.9
Glyma.10G176100 Glycine max HOM05D007044 ORTHO05D008981 3.6e-31 140.2 88 71.6
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 1.4e-30 138.3 88 68.2
PRCOL_00000171 Prasinoderma coloniale HOM05D007044 ORTHO05D008981 1.1e-27 128.6 386 31.9
MELO3C033209.2 Cucumis melo HOM05D007044 ORTHO05D008981 3.5e-26 123.6 190 43.2
MCO07G433 Micromonas commoda HOM05D007044 ORTHO05D008981 7.3e-24 115.9 350 27.4
MCO12G445 Micromonas commoda HOM05D007044 ORTHO05D008981 9.9e-21 105.5 388 25.8
MCO15G559 Micromonas commoda HOM05D007044 ORTHO05D008981 4.9e-20 103.2 320 29.7
CBR_g30110 Chara braunii HOM05D007044 ORTHO05D008981 4.1e-19 100.1 90 50.0
Cre07.g346418 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 2.5e-16 90.9 226 32.3
Pp3c22_6390 Physcomitrium patens HOM05D004224 ORTHO05D006437 4.0e-14 83.6 218 28.4
arahy.Tifrunner.gnm1.ann1.8K57QZ Arachis hypogaea HOM05D001339 ORTHO05D008981 7.6e-13 79.3 172 31.4
AagrBONN_evm.TU.Sc2ySwM_117.735 Anthoceros agrestis HOM05D004224 ORTHO05D006437 1.3e-12 78.6 206 28.6
Cre03.g164650 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 1.4e-11 75.1 345 23.5
SMO351G0583 Selaginella moellendorffii HOM05D005656 ORTHO05D007094 1.9e-11 74.7 211 28.4
Mapoly0016s0035 Marchantia polymorpha HOM05D005656 ORTHO05D006437 2.4e-11 74.3 222 29.3
Os09g0411650 Oryza sativa ssp. japonica HOM05D005456 ORTHO05D006805 1.2e-10 72.0 210 28.6
Cpa.g.sc138.46 Carica papaya HOM05D007044 ORTHO05D008981 6.0e-10 69.7 87 47.1
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 1.7e-09 68.2 86 44.2
CDE04G1829 Ceratophyllum demersum HOM05D005234 ORTHO05D006583 3.9e-09 67.0 230 28.3
PRCOL_00000792 Prasinoderma coloniale HOM05D004224 ORTHO05D028567 5.1e-09 66.6 231 28.1
Rhsim12G0132700 Rhododendron simsii HOM05D005456 ORTHO05D006805 5.1e-09 66.6 213 26.8
CSS0014292 Camellia sinensis var. sinensis HOM05D005456 ORTHO05D006805 8.7e-09 65.9 213 26.8
CSS0028557 Camellia sinensis var. sinensis HOM05D005456 ORTHO05D006805 8.7e-09 65.9 213 26.8
Ah.03g134770 Amaranthus hybridus HOM05D005456 ORTHO05D006805 1.5e-08 65.1 213 27.7
PSO063G5764 Papaver somniferum HOM05D005234 ORTHO05D006583 1.5e-08 65.1 230 27.8
CBR_g3670 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-08 63.9 90 43.3
Zm00001eb312420 Zea mays HOM05D005456 ORTHO05D006805 3.3e-08 63.9 234 26.1
Hund25214 Selenicereus undatus HOM05D005456 ORTHO05D006805 4.3e-08 63.5 218 27.5
Sc04g0007920 Simmondsia chinensis HOM05D005456 ORTHO05D006805 4.3e-08 63.5 213 26.3
EL10Ac6g13252 Beta vulgaris HOM05D005456 ORTHO05D006805 5.6e-08 63.2 217 26.3
Glyma.10G292500 Glycine max HOM05D005234 ORTHO05D006583 5.6e-08 63.2 222 24.8
RcHm_v2.0_Chr1g0364981 Rosa chinensis HOM05D005234 ORTHO05D006583 7.3e-08 62.8 221 25.3
Dinv31388 Davidia involucrata HOM05D005234 ORTHO05D006583 9.6e-08 62.4 221 26.7
PRCOL_00001538 Prasinoderma coloniale HOM05D007044 ORTHO05D028567 9.6e-08 62.4 215 26.0
Actinidia33219 Actinidia chinensis HOM05D005456 ORTHO05D006805 2.8e-07 60.8 214 27.1
CARHR195970 Cardamine hirsuta HOM05D005252 ORTHO05D006788 2.8e-07 60.8 248 25.8
MD01G1116500 Malus domestica HOM05D005234 ORTHO05D006583 2.8e-07 60.8 220 24.5
AagrBONN_evm.TU.Sc2ySwM_228.1763 Anthoceros agrestis HOM05D004224 ORTHO05D006437 3.6e-07 60.5 220 26.8
MCO12G473 Micromonas commoda HOM05D005456 ORTHO05D006805 4.8e-07 60.1 209 29.2
AUR62032826 Chenopodium quinoa HOM05D005456 ORTHO05D006805 6.2e-07 59.7 184 26.6
Manes.01G124000 Manihot esculenta HOM05D005252 ORTHO05D006788 6.2e-07 59.7 332 24.1
CiPaw.01G279400 Carya illinoinensis HOM05D005234 ORTHO05D006583 8.1e-07 59.3 219 24.2
FvH4_7g20720 Fragaria vesca HOM05D005234 ORTHO05D006583 8.1e-07 59.3 223 26.0
AUR62005833 Chenopodium quinoa HOM05D005456 ORTHO05D006805 1.4e-06 58.5 212 25.5
Potri.008G047400 Populus trichocarpa HOM05D005234 ORTHO05D006583 1.4e-06 58.5 234 25.6
MCO15G539 Micromonas commoda HOM05D004224 ORTHO05D007094 1.8e-06 58.2 174 27.6
TWI63G0851 Tripterygium wilfordii HOM05D005234 ORTHO05D006583 1.8e-06 58.2 236 23.7
Eucgr.J01148 Eucalyptus grandis HOM05D005234 ORTHO05D006583 2.4e-06 57.8 245 26.1
AL5G36200 Arabidopsis lyrata HOM05D005234 ORTHO05D006583 3.1e-06 57.4 284 22.2
Cfa001561 Carpinus fangiana HOM05D005234 ORTHO05D006583 4.0e-06 57.0 237 22.8
VMungo0720G1519 Vigna mungo HOM05D005234 ORTHO05D006583 4.0e-06 57.0 198 24.2
Thhalv10015946m.g Eutrema salsugineum HOM05D005252 ORTHO05D006788 9.0e-06 55.8 206 25.2
Sed0019162 Sechium edule HOM05D005234 ORTHO05D006583 9.0e-06 55.8 220 23.6


User provided reference genes

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