Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 1.2e-83 313.2 163 100.0
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 7.7e-54 214.2 120 94.2
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 2.1e-51 206.1 120 90.8
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 8.0e-51 204.1 120 90.0
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 6.7e-50 201.1 117 89.7
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 6.7e-50 201.1 117 89.7
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.1e-49 200.3 120 90.0
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.1e-49 200.3 120 90.0
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 1.5e-49 199.9 120 89.2
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.0e-49 199.5 117 88.9
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 2.0e-49 199.5 117 89.7
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 2.6e-49 199.1 120 90.0
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 2.6e-49 199.1 114 92.1
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 3.3e-49 198.7 114 93.0
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 3.3e-49 198.7 120 85.8
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 4.4e-49 198.4 120 90.0
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 4.4e-49 198.4 114 92.1
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 4.4e-49 198.4 114 92.1
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 4.4e-49 198.4 114 92.1
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 5.7e-49 198.0 114 91.2
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 5.7e-49 198.0 120 90.0
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 7.4e-49 197.6 114 91.2
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 9.7e-49 197.2 120 85.8
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 9.7e-49 197.2 120 85.0
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.3e-48 196.8 120 90.0
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 1.3e-48 196.8 113 92.0
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 1.7e-48 196.4 120 87.5
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 1.7e-48 196.4 123 87.0
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.7e-48 196.4 115 89.6
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.2e-48 196.1 113 92.0
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 2.2e-48 196.1 114 90.4
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 2.2e-48 196.1 113 92.0
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 2.8e-48 195.7 114 91.2
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 2.8e-48 195.7 114 90.4
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 3.7e-48 195.3 117 88.0
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.7e-48 195.3 124 86.3
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 4.8e-48 194.9 111 91.0
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 6.3e-48 194.5 120 87.5
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 6.3e-48 194.5 146 76.7
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 6.3e-48 194.5 113 90.3
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 6.3e-48 194.5 113 91.2
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 8.2e-48 194.1 115 88.7
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 8.2e-48 194.1 113 89.4
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 8.2e-48 194.1 167 64.1
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.1e-47 193.7 117 88.0
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.1e-47 193.7 117 88.0
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.1e-47 193.7 117 88.0
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 1.1e-47 193.7 120 87.5
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 1.4e-47 193.4 120 89.2
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 1.4e-47 193.4 120 88.3
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 1.8e-47 193.0 114 88.6
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 1.8e-47 193.0 113 90.3
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 2.4e-47 192.6 117 87.2
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 2.4e-47 192.6 112 89.3
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 3.1e-47 192.2 113 89.4
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 3.1e-47 192.2 113 89.4
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 3.1e-47 192.2 120 88.3
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 4.1e-47 191.8 114 87.7
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 5.3e-47 191.4 120 85.8
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 7.0e-47 191.0 113 90.3
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 7.0e-47 191.0 113 89.4
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 9.1e-47 190.7 113 89.4
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 9.1e-47 190.7 114 90.4
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 9.1e-47 190.7 116 87.1
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 9.1e-47 190.7 113 88.5
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 9.1e-47 190.7 113 88.5
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 9.1e-47 190.7 115 89.6
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.2e-46 190.3 113 88.5
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.2e-46 190.3 113 88.5
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 1.6e-46 189.9 122 84.4
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 1.6e-46 189.9 122 84.4
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.6e-46 189.9 113 89.4
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 2.0e-46 189.5 113 89.4
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 2.6e-46 189.1 122 85.2
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 2.6e-46 189.1 113 89.4
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 2.6e-46 189.1 113 86.7
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 4.5e-46 188.3 113 86.7
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 5.9e-46 188.0 113 88.5
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 5.9e-46 188.0 113 88.5
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 5.9e-46 188.0 113 88.5
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 5.9e-46 188.0 113 88.5
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 5.9e-46 188.0 113 85.0
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 7.7e-46 187.6 113 88.5
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.0e-45 187.2 114 86.0
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.0e-45 187.2 114 86.0
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.0e-45 187.2 113 87.6
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 1.7e-45 186.4 113 87.6
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 1.7e-45 186.4 113 87.6
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 2.2e-45 186.0 113 87.6
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 2.2e-45 186.0 113 87.6
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 2.2e-45 186.0 116 84.5
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 2.2e-45 186.0 113 86.7
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.2e-45 186.0 113 84.1
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.9e-45 185.7 113 87.6
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 2.9e-45 185.7 113 86.7
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 2.9e-45 185.7 113 86.7
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 2.9e-45 185.7 120 83.3
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 3.8e-45 185.3 113 86.7
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 5.0e-45 184.9 113 86.7
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 5.0e-45 184.9 113 86.7
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 5.0e-45 184.9 113 86.7
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 5.0e-45 184.9 114 85.1
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 6.5e-45 184.5 113 85.0
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 6.5e-45 184.5 113 86.7
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 6.5e-45 184.5 123 80.5
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 8.5e-45 184.1 113 86.7
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.1e-44 183.7 114 86.0
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 1.9e-44 183.0 111 86.5
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 2.5e-44 182.6 113 85.8
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 3.2e-44 182.2 116 82.8
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 4.2e-44 181.8 114 85.1
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 5.5e-44 181.4 113 85.8
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 7.2e-44 181.0 113 82.3
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 9.4e-44 180.6 111 84.7
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.2e-43 180.3 120 81.7
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 1.2e-43 180.3 112 85.7
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 2.7e-43 179.1 113 82.3
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 3.6e-43 178.7 110 85.5
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 3.6e-43 178.7 113 84.1
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 4.7e-43 178.3 105 89.5
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 4.7e-43 178.3 109 82.6
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 8.0e-43 177.6 112 80.4
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 1.0e-42 177.2 125 78.4
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 2.3e-42 176.0 149 68.5
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 3.0e-42 175.6 130 77.7
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 3.0e-42 175.6 113 83.2
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 6.8e-42 174.5 113 82.3
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 7.5e-41 171.0 114 74.6
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 3.7e-40 168.7 109 81.7
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 4.1e-39 165.2 175 58.3
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 3.8e-37 158.7 107 73.8
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 5.0e-37 158.3 89 88.8
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.1e-36 157.1 119 76.5
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.5e-36 156.8 88 89.8
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 3.0e-34 149.1 197 49.7
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 2.6e-33 146.0 81 91.4
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 1.1e-31 140.6 72 94.4
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 2.4e-31 139.4 85 85.9
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 9.1e-31 137.5 81 87.7
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.6e-30 136.7 99 76.8
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 7.7e-30 134.4 85 84.7
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.0e-29 134.0 85 83.5
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.3e-29 132.9 86 83.7
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 5.0e-29 131.7 86 80.2
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 1.9e-28 129.8 67 94.0
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 4.2e-28 128.6 94 75.5
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 2.8e-27 125.9 102 68.6
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 2.8e-27 125.9 102 68.6
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 5.2e-26 121.7 109 59.6
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 9.8e-25 117.5 97 54.6
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.3e-24 117.1 74 83.8
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 3.5e-22 109.0 70 85.7
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 5.9e-22 108.2 70 85.7
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 1.7e-21 106.7 80 76.2
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 8.6e-21 104.4 83 71.1
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 4.0e-18 95.5 72 70.8
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 4.4e-17 92.0 107 57.9
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 3.2e-15 85.9 47 89.4
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 1.5e-09 67.0 62 64.5
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 4.4e-09 65.5 45 80.0
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 1.9e-07 60.1 48 72.9
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 3.5e-06 55.8 43 74.4


User provided reference genes

Program Settings