Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 2.3e-39 166.8 188 100.0
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 2.8e-21 106.7 187 64.2
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 3.1e-20 103.2 132 77.3
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 6.9e-20 102.1 188 46.3
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 9.4e-17 91.7 180 45.6
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 9.4e-17 91.7 188 65.4
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.2e-16 91.3 189 53.4
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.2e-16 91.3 188 63.8
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 1.0e-15 88.2 172 72.7
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 2.3e-15 87.0 184 67.4
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 3.9e-15 86.3 187 64.7
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 3.9e-15 86.3 187 53.5
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 2.5e-14 83.6 188 70.2
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 3.3e-14 83.2 187 73.8
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 7.4e-14 82.0 103 61.2
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 7.4e-14 82.0 103 61.2
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 7.4e-14 82.0 187 51.3
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 2.2e-13 80.5 103 56.3
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 3.7e-13 79.7 133 64.7
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 6.3e-13 79.0 129 69.0
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 1.4e-12 77.8 103 61.2
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 1.4e-12 77.8 103 79.6
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 1.8e-12 77.4 97 82.5
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 2.4e-12 77.0 178 66.9
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 3.1e-12 76.6 103 59.2
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 5.3e-12 75.9 130 69.2
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 9.1e-12 75.1 133 57.1
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 2.6e-11 73.6 102 64.7
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 2.6e-11 73.6 103 58.3
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 3.4e-11 73.2 103 69.9
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 3.4e-11 73.2 103 74.8
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 3.4e-11 73.2 180 57.8
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.5e-11 72.8 102 67.6
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 5.9e-11 72.4 47 83.0
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 5.9e-11 72.4 133 60.9
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 5.9e-11 72.4 133 60.9
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 7.7e-11 72.0 131 60.3
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 7.7e-11 72.0 149 63.8
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 1.0e-10 71.6 131 64.9
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 1.3e-10 71.2 103 62.1
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 1.7e-10 70.9 95 73.7
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.2e-10 70.5 104 60.6
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 3.8e-10 69.7 46 78.3
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 3.8e-10 69.7 47 78.7
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 5.0e-10 69.3 103 63.1
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 5.0e-10 69.3 46 78.3
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 5.0e-10 69.3 101 67.3
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 6.5e-10 68.9 103 60.2
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 6.5e-10 68.9 101 74.3
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 8.5e-10 68.6 103 46.6
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 8.5e-10 68.6 45 80.0
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 8.5e-10 68.6 47 76.6
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 1.1e-09 68.2 47 78.7
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 1.4e-09 67.8 95 78.9
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 1.4e-09 67.8 103 61.2
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 2.5e-09 67.0 101 57.4
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 2.5e-09 67.0 131 61.8
FvH4_1g25270 Fragaria vesca HOM05D003347 ORTHO05D003821 3.2e-09 66.6 180 57.8
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 4.2e-09 66.2 96 62.5
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 4.2e-09 66.2 103 72.8
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 7.2e-09 65.5 101 63.4
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 7.2e-09 65.5 185 44.9
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 7.2e-09 65.5 100 47.0
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 9.4e-09 65.1 47 76.6
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 9.4e-09 65.1 47 76.6
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 9.4e-09 65.1 103 67.0
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 1.2e-08 64.7 100 47.0
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 1.6e-08 64.3 47 74.5
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.6e-08 64.3 131 68.7
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 1.6e-08 64.3 127 70.1
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 2.1e-08 63.9 103 57.3
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.7e-08 63.5 187 43.3
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 2.7e-08 63.5 102 43.1
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 3.6e-08 63.2 46 69.6
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 3.6e-08 63.2 102 54.9
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 4.7e-08 62.8 45 73.3
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.7e-08 62.8 180 56.1
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 4.7e-08 62.8 103 58.3
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 6.1e-08 62.4 47 72.3
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 7.9e-08 62.0 102 64.7
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 7.9e-08 62.0 92 50.0
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 7.9e-08 62.0 95 67.4
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 1.0e-07 61.6 46 69.6
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 1.4e-07 61.2 45 71.1
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 1.4e-07 61.2 41 75.6
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.8e-07 60.8 44 68.2
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.8e-07 60.8 45 66.7
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 1.8e-07 60.8 103 60.2
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 1.8e-07 60.8 131 64.1
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 1.8e-07 60.8 97 61.9
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 1.8e-07 60.8 47 70.2
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 2.3e-07 60.5 103 68.9
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 2.3e-07 60.5 103 50.5
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 3.0e-07 60.1 103 38.8
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 3.0e-07 60.1 44 68.2
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 3.9e-07 59.7 188 61.7
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 3.9e-07 59.7 45 66.7
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 3.9e-07 59.7 47 68.1
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 5.1e-07 59.3 42 76.2
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 5.1e-07 59.3 44 65.9
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 6.7e-07 58.9 103 63.1
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 6.7e-07 58.9 103 63.1
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 6.7e-07 58.9 103 39.8
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 6.7e-07 58.9 47 61.7
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 6.7e-07 58.9 104 56.7
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 6.7e-07 58.9 41 70.7
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 6.7e-07 58.9 46 65.2
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 6.7e-07 58.9 131 55.7
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.1e-06 58.2 103 39.8
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 1.5e-06 57.8 46 63.0
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 1.5e-06 57.8 97 64.9
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 1.5e-06 57.8 103 63.1
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 1.5e-06 57.8 47 68.1
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 2.0e-06 57.4 38 78.9
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 2.6e-06 57.0 103 50.5
ClCG02G000100 Citrullus lanatus HOM05D003347 ORTHO05D003821 3.3e-06 56.6 86 81.4
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 3.3e-06 56.6 47 61.7
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 3.3e-06 56.6 46 63.0
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 4.4e-06 56.2 100 57.0
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 4.4e-06 56.2 131 63.4
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 5.7e-06 55.8 47 61.7
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 5.7e-06 55.8 131 64.9
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 7.4e-06 55.5 102 36.3
DCAR_031791 Daucus carota HOM05D003347 ORTHO05D003821 9.7e-06 55.1 41 68.3


User provided reference genes

Program Settings