Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 3.8e-208 728.0 386 100.0
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 1.1e-114 417.5 338 69.8
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 9.2e-98 361.3 352 60.5
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 3.0e-96 356.3 335 61.2
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 3.0e-96 356.3 333 62.2
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 1.1e-95 354.4 333 61.9
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 5.6e-95 352.1 333 62.2
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.5e-76 290.8 369 51.8
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 2.0e-76 290.4 337 54.6
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 3.4e-76 289.7 330 55.2
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 1.2e-73 281.2 343 51.3
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 2.3e-72 276.9 314 52.5
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 1.1e-71 274.6 357 49.3
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.5e-71 274.2 316 53.8
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 4.8e-70 269.2 336 48.5
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 8.1e-70 268.5 239 63.2
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.8e-69 267.3 328 51.5
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 2.4e-69 266.9 349 49.9
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 3.1e-69 266.5 314 52.5
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 6.9e-69 265.4 205 67.8
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 1.2e-68 264.6 327 50.8
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 4.5e-68 262.7 318 50.9
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 1.1e-66 258.1 384 46.6
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 2.4e-66 256.9 266 57.1
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 2.4e-66 256.9 321 50.2
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 4.2e-66 256.1 313 52.1
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.2e-65 254.6 354 44.9
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 2.7e-65 253.4 351 47.3
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 1.0e-64 251.5 206 66.5
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 1.3e-64 251.1 316 50.3
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 1.3e-64 251.1 232 62.5
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 1.1e-63 248.1 237 60.8
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.9e-63 247.3 363 47.4
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 1.3e-62 244.6 385 44.2
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 1.3e-62 244.6 260 57.7
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.6e-62 244.2 401 44.1
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 3.7e-62 243.0 308 50.3
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 8.2e-62 241.9 354 43.5
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 1.4e-61 241.1 301 50.5
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 1.8e-61 240.7 258 57.4
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 5.3e-61 239.2 204 63.2
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 5.3e-61 239.2 337 47.5
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 9.0e-61 238.4 309 48.2
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 1.5e-60 237.7 260 54.6
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 2.0e-60 237.3 297 49.5
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 2.6e-60 236.9 272 54.0
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 3.4e-60 236.5 261 53.3
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 4.5e-60 236.1 211 64.0
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 5.8e-60 235.7 285 50.5
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 1.3e-59 234.6 289 47.1
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 2.2e-59 233.8 259 56.0
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.9e-59 233.4 233 57.1
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 4.9e-59 232.6 283 51.9
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 4.9e-59 232.6 528 35.8
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 4.9e-59 232.6 223 58.7
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 4.9e-59 232.6 223 58.7
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 1.1e-58 231.5 269 53.9
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 3.2e-58 229.9 269 53.9
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 3.2e-58 229.9 266 52.6
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 3.2e-58 229.9 204 60.8
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 4.2e-58 229.6 205 60.5
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 1.6e-57 227.6 206 58.7
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 3.5e-57 226.5 198 60.6
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 8.7e-56 221.9 246 51.6
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 8.7e-56 221.9 210 61.4
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 2.5e-55 220.3 254 53.1
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 5.7e-55 219.2 300 47.7
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 2.2e-54 217.2 216 57.4
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 6.3e-54 215.7 260 50.4
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 8.2e-54 215.3 163 67.5
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.4e-53 214.5 321 43.0
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 1.8e-53 214.2 212 58.0
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 3.1e-53 213.4 311 44.7
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 7.7e-52 208.8 236 55.5
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 8.5e-51 205.3 463 36.9
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 1.4e-50 204.5 262 45.8
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 2.5e-50 203.8 390 38.2
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 1.6e-49 201.1 256 46.9
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 6.1e-49 199.1 212 59.9
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 7.9e-49 198.7 228 51.8
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.4e-48 198.0 228 52.2
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 1.8e-48 197.6 253 49.8
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.3e-48 197.2 208 59.6
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 3.3e-47 193.4 323 42.4
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 4.3e-47 193.0 231 50.2
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.3e-46 191.4 221 50.2
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 1.3e-43 181.4 173 56.6
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 2.2e-43 180.6 262 45.4
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 6.5e-43 179.1 336 40.2
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 1.4e-42 177.9 248 47.2
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 9.4e-42 175.3 197 50.8
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 4.7e-41 172.9 157 58.6
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 6.1e-41 172.6 331 39.9
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.9e-40 169.9 336 40.5
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 3.9e-40 169.9 130 63.1
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 3.9e-40 169.9 235 47.7
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 1.1e-39 168.3 292 43.2
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 1.5e-39 167.9 204 49.5
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 3.3e-39 166.8 232 44.4
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 4.5e-36 156.4 209 45.0
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 1.0e-35 155.2 199 49.2
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 8.5e-35 152.1 180 48.3
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 1.1e-34 151.8 180 47.2
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 1.1e-34 151.8 180 47.2
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 1.9e-34 151.0 180 48.3
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.0e-32 145.2 156 48.7
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 3.9e-32 143.3 252 39.3
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 5.7e-31 139.4 195 46.7
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 2.4e-29 134.0 142 54.2
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 4.1e-29 133.3 140 54.3
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 9.1e-29 132.1 283 37.5
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.2e-25 121.7 127 48.0
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 2.7e-25 120.6 129 48.1
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 3.6e-25 120.2 110 60.0
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 4.8e-22 109.8 70 74.3
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 1.4e-21 108.2 119 47.9
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 4.1e-21 106.7 93 55.9
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 5.3e-21 106.3 109 50.5
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.0e-20 104.4 267 37.1
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 4.5e-20 103.2 82 64.6
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 8.5e-19 99.0 268 35.1
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 6.8e-16 89.4 177 43.5
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 7.5e-15 85.9 63 65.1
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.8e-14 84.0 119 41.2
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 7.0e-13 79.3 140 39.3
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 3.8e-11 73.6 106 39.6
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 6.6e-11 72.8 217 33.6
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 1.1e-10 72.0 192 31.8
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 5.5e-10 69.7 43 67.4
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 7.2e-10 69.3 246 30.5
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 4.0e-08 63.5 68 50.0
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 1.2e-07 62.0 56 55.4
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 2.6e-07 60.8 55 54.5
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 3.4e-07 60.5 139 43.9
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 1.7e-06 58.2 52 53.8
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 3.7e-06 57.0 256 28.1
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 8.3e-06 55.8 60 45.0


User provided reference genes

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