Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 2.1e-214 748.8 389 100.0
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 8.0e-142 507.7 366 74.6
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 3.7e-139 498.8 399 69.7
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 7.3e-135 484.6 390 67.7
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 2.6e-132 476.1 358 74.0
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 3.4e-132 475.7 390 66.7
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 3.2e-130 469.2 402 64.9
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 1.3e-115 420.6 363 62.8
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 4.6e-113 412.1 369 62.1
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 2.5e-111 406.4 363 62.3
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 2.0e-108 396.7 360 61.4
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 7.1e-106 388.3 359 59.1
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 9.3e-106 387.9 363 61.4
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 2.3e-104 383.3 348 59.2
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 7.3e-103 378.3 357 58.8
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 7.3e-103 378.3 364 57.4
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 1.6e-102 377.1 358 57.3
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 8.1e-102 374.8 347 57.6
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 1.8e-101 373.6 360 58.1
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 1.2e-100 370.9 361 57.9
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 1.7e-99 367.1 361 56.0
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 1.4e-98 364.0 348 58.3
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 1.4e-98 364.0 346 56.6
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.9e-98 363.6 352 57.1
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 9.3e-98 361.3 364 56.0
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 3.5e-97 359.4 352 56.8
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 6.7e-96 355.1 347 55.6
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 2.5e-95 353.2 347 55.6
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 6.2e-94 348.6 331 58.0
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 3.1e-93 346.3 347 54.5
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 2.6e-92 343.2 354 56.5
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 2.6e-92 343.2 350 54.6
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 1.3e-91 340.9 261 66.7
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 1.7e-91 340.5 357 52.1
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.9e-91 339.7 328 59.5
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 2.9e-91 339.7 386 52.3
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 6.5e-91 338.6 346 54.3
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 6.5e-91 338.6 406 49.8
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 8.4e-91 338.2 362 52.2
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 5.5e-90 335.5 359 51.5
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 3.5e-89 332.8 350 52.3
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 6.7e-88 328.6 355 52.4
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 1.5e-87 327.4 360 52.5
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 5.7e-87 325.5 354 53.4
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 5.7e-87 325.5 358 53.1
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 2.8e-86 323.2 346 53.5
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 3.7e-86 322.8 353 53.5
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 6.2e-86 322.0 363 50.4
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 1.4e-85 320.9 353 53.0
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 1.4e-85 320.9 367 51.2
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 1.8e-85 320.5 344 50.9
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 2.4e-85 320.1 344 50.9
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 9.0e-85 318.2 363 52.1
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 1.5e-84 317.4 329 54.4
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 8.4e-83 311.6 357 52.4
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 4.2e-82 309.3 391 49.6
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 3.5e-81 306.2 364 49.2
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 4.6e-81 305.8 352 52.0
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 5.1e-80 302.4 353 49.9
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 3.3e-79 299.7 366 48.6
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 4.3e-79 299.3 347 53.6
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 4.8e-78 295.8 344 50.9
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 5.3e-77 292.4 345 50.7
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 6.5e-75 285.4 388 45.4
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 4.6e-73 279.3 343 48.7
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 1.4e-72 277.7 359 47.6
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 1.8e-72 277.3 307 49.5
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 3.9e-72 276.2 347 46.7
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 1.5e-71 274.2 343 49.3
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 2.5e-71 273.5 343 48.7
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 3.7e-70 269.6 376 46.5
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 5.3e-69 265.8 320 47.5
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 6.9e-69 265.4 332 48.2
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 1.2e-68 264.6 345 45.5
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 1.2e-68 264.6 350 46.0
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 1.5e-68 264.2 355 46.5
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 2.0e-68 263.8 344 47.1
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 3.4e-68 263.1 359 43.5
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 4.5e-68 262.7 343 47.5
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 1.3e-67 261.2 345 46.7
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 1.7e-67 260.8 343 47.5
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 3.8e-67 259.6 376 44.1
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 5.0e-67 259.2 349 45.3
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 6.5e-67 258.8 350 46.6
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 6.5e-67 258.8 340 45.9
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 1.4e-66 257.7 349 46.1
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 4.2e-66 256.1 286 48.6
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.6e-65 254.2 346 46.0
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 1.8e-64 250.8 453 37.7
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 3.0e-64 250.0 341 45.5
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 2.2e-62 243.8 345 45.5
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.8e-62 243.4 351 42.7
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 8.2e-62 241.9 281 48.0
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 1.8e-61 240.7 311 45.0
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.8e-61 240.7 207 63.3
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 2.4e-61 240.4 374 42.8
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 1.2e-60 238.0 361 42.4
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 2.2e-59 233.8 350 40.9
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 3.8e-59 233.0 343 43.1
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 6.1e-57 225.7 365 40.8
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 3.1e-53 213.4 282 46.8
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 7.0e-53 212.2 316 41.5
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 2.0e-52 210.7 358 38.0
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.7e-51 207.6 207 52.7
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 2.9e-51 206.8 277 46.2
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 3.2e-50 203.4 349 37.5
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 3.2e-50 203.4 188 59.0
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 1.2e-49 201.4 369 34.1
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 1.7e-46 191.0 361 39.3
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 2.8e-46 190.3 312 42.0
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 1.2e-44 184.9 345 39.4
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 1.2e-44 184.9 314 36.9
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 2.9e-43 180.3 210 49.5
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 7.2e-42 175.6 262 41.6
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 7.2e-42 175.6 262 41.6
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 7.2e-42 175.6 262 41.6
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 3.7e-38 163.3 217 43.3
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 3.1e-37 160.2 251 40.6
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 2.7e-36 157.1 252 40.1
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 1.3e-35 154.8 216 42.1
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 6.6e-35 152.5 121 64.5
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 3.6e-33 146.7 172 44.8
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 2.3e-32 144.1 221 43.4
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 6.8e-32 142.5 293 32.8
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 1.3e-27 128.3 170 44.7
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 3.1e-24 117.1 399 27.3
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-23 115.2 127 46.5
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 3.4e-23 113.6 421 28.5
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 3.9e-19 100.1 94 63.8
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 3.9e-19 100.1 110 44.5
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 5.2e-16 89.7 198 33.3
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 1.2e-15 88.6 104 53.8
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 5.8e-15 86.3 66 62.1
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 2.2e-14 84.3 66 60.6
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.2e-09 68.6 77 55.8
AagrBONN_evm.TU.Sc2ySwM_344.4450 Anthoceros agrestis HOM05D034800 ORTHO05D006884 3.1e-08 63.9 393 21.9
BcaB04g18591 Brassica carinata HOM05D000144 ORTHO05D006884 1.3e-06 58.5 138 36.2
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.3e-06 58.5 38 73.7


User provided reference genes

Program Settings