Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 9.3e-133 476.9 238 100.0
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 8.0e-92 340.9 260 70.4
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 2.0e-87 326.2 241 73.4
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 1.9e-85 319.7 242 69.0
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 1.4e-83 313.5 224 70.1
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 2.3e-83 312.8 243 67.1
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 5.2e-83 311.6 245 68.6
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 5.2e-83 311.6 239 70.3
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 5.2e-83 311.6 234 69.7
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 3.3e-82 308.9 241 68.5
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 9.7e-82 307.4 251 66.5
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 9.7e-82 307.4 243 68.7
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 1.3e-81 307.0 226 69.5
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.3e-81 307.0 239 69.5
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 3.7e-81 305.4 210 71.4
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 3.7e-81 305.4 248 65.3
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 4.8e-81 305.1 198 74.2
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 1.8e-80 303.1 236 68.6
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 2.0e-79 299.7 183 79.8
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 2.0e-79 299.7 245 67.8
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 3.5e-79 298.9 256 66.0
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.0e-78 297.4 256 65.2
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 1.3e-78 297.0 242 65.7
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 2.2e-78 296.2 239 62.8
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 4.2e-77 292.0 202 74.8
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 9.4e-77 290.8 226 66.4
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 1.4e-75 287.0 211 70.6
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 1.4e-75 287.0 216 68.1
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 2.3e-75 286.2 246 63.8
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 5.7e-74 281.6 231 62.8
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 5.7e-74 281.6 237 63.3
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 1.3e-73 280.4 168 82.7
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 1.4e-72 276.9 193 73.1
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 5.4e-72 275.0 192 74.5
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 5.4e-72 275.0 283 54.8
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 7.0e-72 274.6 207 67.6
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 7.0e-72 274.6 227 63.9
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 1.6e-71 273.5 248 60.1
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 1.6e-71 273.5 202 67.8
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 3.5e-71 272.3 202 70.3
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 3.5e-71 272.3 228 64.9
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 5.9e-71 271.6 205 69.8
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 3.8e-70 268.9 199 69.8
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 5.0e-70 268.5 237 59.1
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 6.6e-70 268.1 196 70.9
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 8.6e-70 267.7 217 65.0
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 1.1e-69 267.3 164 80.5
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 4.2e-69 265.4 195 70.3
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 5.5e-69 265.0 229 61.6
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 7.2e-69 264.6 241 60.6
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 7.2e-69 264.6 235 60.9
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 2.1e-68 263.1 190 70.0
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 2.1e-68 263.1 241 61.0
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 2.8e-68 262.7 241 60.6
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 4.7e-68 261.9 224 64.7
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 4.7e-68 261.9 241 59.8
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 8.0e-68 261.2 191 69.1
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 2.3e-67 259.6 203 66.0
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 6.8e-67 258.1 240 60.0
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 6.8e-67 258.1 161 79.5
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 8.9e-67 257.7 202 67.3
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 1.2e-66 257.3 233 60.5
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 1.5e-66 256.9 198 69.2
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 2.6e-66 256.1 203 65.5
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 4.4e-66 255.4 229 60.7
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 9.8e-66 254.2 192 67.7
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 1.7e-65 253.4 193 66.3
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 2.2e-65 253.1 204 64.2
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 3.7e-65 252.3 192 67.2
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 3.7e-65 252.3 203 65.0
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 3.7e-65 252.3 203 65.0
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 3.7e-65 252.3 194 67.0
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 4.9e-65 251.9 226 62.4
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 4.9e-65 251.9 203 64.5
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 4.9e-65 251.9 230 60.9
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 6.3e-65 251.5 195 66.7
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 6.3e-65 251.5 191 67.5
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 8.3e-65 251.1 190 66.3
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 1.4e-64 250.4 192 66.1
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 3.1e-64 249.2 192 66.7
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 3.1e-64 249.2 192 66.1
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 4.1e-64 248.8 190 66.3
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 5.4e-64 248.4 248 58.5
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 2.0e-63 246.5 191 65.4
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 5.9e-63 245.0 162 73.5
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 8.6e-62 241.1 195 63.6
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 1.5e-61 240.4 181 66.3
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.3e-61 239.2 235 56.2
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 1.6e-60 236.9 166 69.9
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 6.1e-60 235.0 168 69.0
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 1.8e-59 233.4 197 59.4
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 1.5e-58 230.3 160 69.4
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 2.0e-58 229.9 154 72.1
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.0e-58 229.9 233 53.2
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 5.8e-58 228.4 185 64.3
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 1.4e-56 223.8 241 55.2
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 3.2e-56 222.6 203 58.6
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 2.0e-55 219.9 156 71.8
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 5.0e-54 215.3 251 51.4
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 4.3e-53 212.2 170 65.3
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 5.2e-51 205.3 140 70.7
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 6.0e-47 191.8 156 60.9
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 6.0e-47 191.8 156 60.9
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 1.1e-45 187.6 185 54.6
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 5.6e-45 185.3 242 47.1
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 2.6e-42 176.4 192 51.0
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 7.5e-42 174.9 156 60.3
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 1.4e-40 170.6 159 51.6
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 2.4e-40 169.9 163 55.8
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 3.8e-33 146.0 93 76.3
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 8.4e-33 144.8 170 44.7
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 4.2e-32 142.5 102 71.6
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 2.1e-31 140.2 134 61.9
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 4.6e-31 139.0 82 81.7
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 1.7e-30 137.1 158 44.3
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 2.3e-30 136.7 153 53.6
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 6.6e-30 135.2 153 54.2
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 6.6e-30 135.2 111 64.9
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 4.3e-29 132.5 156 45.5
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 4.3e-29 132.5 82 78.0
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 8.1e-28 128.3 112 64.3
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 8.4e-25 118.2 159 39.0
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 1.7e-22 110.5 96 58.3
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 3.9e-22 109.4 69 73.9
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 8.7e-22 108.2 122 54.1
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.6e-15 87.4 113 46.0
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 2.3e-14 83.6 128 38.3
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 1.6e-12 77.4 53 77.4
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 1.5e-10 70.9 94 41.5
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.2e-08 63.2 96 42.7
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 4.2e-08 62.8 48 60.4


User provided reference genes

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