Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 1.0e-232 809.7 402 100.0
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 6.7e-208 727.2 403 89.6
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 3.3e-199 698.4 402 85.3
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 1.2e-180 636.7 402 79.6
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 6.5e-179 630.9 402 80.3
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 2.5e-178 629.0 402 79.9
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 2.0e-167 592.8 411 75.7
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 6.3e-166 587.8 409 73.6
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 2.1e-161 572.8 411 70.6
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.7e-161 572.4 405 71.9
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 8.0e-161 570.9 401 73.8
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 3.0e-160 568.9 405 71.4
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 3.0e-160 568.9 400 71.8
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 6.8e-160 567.8 407 71.5
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 2.0e-159 566.2 407 72.5
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 2.8e-158 562.4 400 73.2
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 3.7e-158 562.0 402 70.9
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 4.8e-158 561.6 403 72.7
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 6.3e-158 561.2 395 70.6
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 6.3e-158 561.2 407 70.3
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 1.1e-157 560.5 328 82.0
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 1.4e-157 560.1 412 69.7
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 1.8e-157 559.7 406 70.7
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 7.0e-157 557.8 408 69.9
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.2e-156 557.0 404 69.6
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 4.5e-156 555.1 405 71.6
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 4.5e-156 555.1 417 70.5
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 1.3e-155 553.5 404 71.0
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.7e-155 553.1 407 71.0
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.5e-155 551.2 413 67.8
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 8.5e-155 550.8 408 69.4
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 4.2e-154 548.5 332 79.5
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 7.2e-154 547.7 392 72.4
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 1.2e-153 547.0 361 73.7
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 3.6e-153 545.4 324 80.2
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 1.0e-152 543.9 322 81.7
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 1.4e-152 543.5 331 80.4
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 1.8e-152 543.1 383 71.0
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 5.2e-152 541.6 404 70.8
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 4.4e-151 538.5 411 65.2
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 9.8e-151 537.3 416 67.3
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 2.2e-150 536.2 322 79.2
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 4.9e-150 535.0 321 79.1
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.4e-149 532.7 417 65.5
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 1.6e-148 530.0 333 77.5
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 3.5e-148 528.9 324 78.7
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 3.5e-148 528.9 372 73.1
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 4.5e-148 528.5 410 67.3
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 1.3e-147 526.9 407 67.6
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 8.6e-147 524.2 400 67.2
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 2.5e-146 522.7 404 66.8
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 2.5e-146 522.7 405 66.2
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 3.3e-146 522.3 411 67.4
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 3.3e-146 522.3 321 78.8
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 3.3e-146 522.3 321 78.8
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 4.3e-146 521.9 295 83.7
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 5.6e-146 521.5 321 78.2
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 1.4e-144 516.9 402 66.7
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 3.0e-144 515.8 410 66.3
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 5.2e-144 515.0 328 77.4
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 6.8e-144 514.6 408 68.1
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 8.9e-144 514.2 409 66.3
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 8.9e-144 514.2 388 68.0
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 1.7e-142 510.0 398 66.3
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 1.7e-142 510.0 398 66.3
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 2.2e-142 509.6 401 66.1
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 2.9e-142 509.2 338 74.3
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 3.7e-142 508.8 424 64.4
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 4.9e-142 508.4 402 65.7
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 1.1e-141 507.3 352 71.3
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.4e-141 506.9 331 74.9
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.4e-141 506.1 322 73.9
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 4.1e-141 505.4 426 63.8
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 7.0e-141 504.6 331 74.6
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 2.7e-140 502.7 296 79.4
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 8.6e-139 497.7 414 63.5
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 3.3e-138 495.7 396 64.9
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 4.3e-138 495.4 293 80.5
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.2e-137 493.8 329 70.8
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 2.9e-134 482.6 357 66.9
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 2.9e-134 482.6 409 63.8
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 3.5e-132 475.7 272 79.0
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 3.9e-131 472.2 257 87.2
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 5.0e-131 471.9 380 64.5
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.5e-130 470.3 326 70.6
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 5.6e-130 468.4 371 64.7
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 8.9e-128 461.1 317 69.1
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 4.4e-127 458.8 324 68.2
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 1.3e-126 457.2 330 66.1
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 2.2e-126 456.4 356 68.3
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.4e-125 453.8 421 60.1
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.4e-125 453.0 358 65.6
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.4e-125 453.0 358 65.6
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.4e-125 453.0 358 65.6
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 7.1e-125 451.4 414 58.7
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 3.0e-123 446.0 291 69.1
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 3.9e-123 445.7 326 64.1
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 6.6e-123 444.9 404 60.6
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 1.9e-122 443.4 395 58.2
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 3.3e-122 442.6 365 60.0
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 2.1e-121 439.9 292 70.9
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 1.8e-120 436.8 245 83.7
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 6.8e-120 434.9 242 83.5
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.5e-119 433.7 262 82.1
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 2.0e-119 433.3 394 59.6
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 4.4e-119 432.2 338 65.4
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 7.1e-117 424.9 319 64.9
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 3.5e-116 422.5 410 58.3
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 6.0e-116 421.8 328 62.2
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 7.8e-116 421.4 325 62.2
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.3e-114 416.0 328 61.6
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 4.3e-114 415.6 236 82.6
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.4e-111 406.0 325 61.2
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 1.7e-110 403.7 246 78.9
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 2.7e-108 396.4 216 88.0
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 7.8e-108 394.8 214 88.3
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.7e-107 393.7 358 59.2
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 9.0e-104 381.3 274 69.3
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.9e-102 376.3 290 67.6
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 4.9e-102 375.6 256 73.0
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.6e-100 370.5 303 62.4
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 9.6e-98 361.3 303 63.7
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.3e-97 360.9 351 60.1
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 1.6e-97 360.5 268 61.9
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 1.6e-97 360.5 326 54.6
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 2.1e-92 343.6 220 75.5
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 1.0e-91 341.3 288 59.0
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 2.3e-91 340.1 296 62.8
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 5.1e-91 339.0 327 52.9
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 2.6e-87 326.6 360 53.6
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.3e-83 313.5 204 71.6
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 3.9e-83 312.8 330 55.2
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 2.8e-81 306.6 330 53.3
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 3.1e-80 303.1 160 86.9
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 2.0e-79 300.4 173 83.8
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.0e-79 300.4 272 58.5
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 8.5e-78 295.0 242 68.2
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.5e-74 283.5 159 86.2
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 2.8e-73 280.0 158 81.0
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 2.4e-72 276.9 215 62.8
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 2.4e-72 276.9 398 45.5
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 3.2e-69 266.5 208 66.3
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 4.2e-69 266.2 177 72.9
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 1.2e-68 264.6 281 50.2
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 6.3e-65 252.3 174 67.8
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.4e-64 250.4 154 73.4
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 9.1e-64 248.4 239 54.4
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 1.2e-63 248.1 282 44.7
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 9.4e-61 238.4 235 57.9
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 5.2e-59 232.6 188 68.6
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 7.4e-58 228.8 149 75.2
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 2.2e-57 227.3 137 77.4
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.2e-57 227.3 148 69.6
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.4e-56 223.8 274 43.8
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 1.0e-54 218.4 159 66.7
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 1.5e-53 214.5 215 59.5
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 5.5e-53 212.6 177 59.9
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.3e-51 207.2 274 44.2
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 1.8e-48 197.6 194 57.2
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.1e-48 196.4 174 54.0
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 1.5e-45 188.0 174 54.0
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 7.0e-40 169.1 147 57.8
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 3.6e-36 156.8 182 52.7
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 4.0e-35 153.3 154 58.4
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.1e-29 135.2 81 75.3
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 1.0e-27 128.6 72 87.5
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 2.3e-27 127.5 146 44.5
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.2e-25 120.9 70 80.0
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 1.8e-24 117.9 102 53.9
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 1.7e-22 111.3 160 45.0
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 3.1e-19 100.5 168 39.9
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 1.2e-18 98.6 53 81.1
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 4.9e-17 93.2 86 58.1
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.4e-16 90.9 55 76.4
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 5.0e-14 83.2 56 71.4
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.5e-13 80.9 67 53.7
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 9.5e-13 79.0 149 39.6
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 9.5e-13 79.0 44 84.1
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.6e-12 78.2 65 53.8
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 8.1e-12 75.9 45 75.6
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 1.4e-11 75.1 52 63.5
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 4.0e-11 73.6 48 72.9
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 6.4e-09 66.2 259 29.7
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 1.2e-07 62.0 252 28.2
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 7.8e-07 59.3 41 70.7


User provided reference genes

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