Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G275100 Prunus persica HOM05D005443 ORTHO05D009021 1.1e-44 183.0 94 100.0
MD09G1249200 Malus domestica HOM05D005443 ORTHO05D009021 8.1e-32 140.2 113 68.1
FAN02G0200 Fragaria x ananassa HOM05D005443 ORTHO05D009021 2.5e-28 128.6 113 62.8
GSVIVG01020531001 Vitis vinifera HOM05D005443 ORTHO05D009021 4.2e-28 127.9 117 59.0
RcHm_v2.0_Chr2g0126191 Rosa chinensis HOM05D005443 ORTHO05D009021 5.5e-28 127.5 113 62.8
CiPaw.04G125200 Carya illinoinensis HOM05D005443 ORTHO05D009021 2.1e-27 125.6 119 58.0
Sed0001067 Sechium edule HOM05D005443 ORTHO05D009021 2.1e-27 125.6 115 59.1
Cfa014595 Carpinus fangiana HOM05D005443 ORTHO05D009021 1.8e-26 122.5 119 58.8
MELO3C024064.2 Cucumis melo HOM05D005443 ORTHO05D009021 2.3e-26 122.1 119 58.0
Potri.019G101100 Populus trichocarpa HOM05D005443 ORTHO05D009021 3.0e-26 121.7 119 55.5
Cpa.g.sc34.150 Carica papaya HOM05D005443 ORTHO05D009021 6.7e-26 120.6 115 55.7
Haze_13148 Corylus avellana HOM05D005443 ORTHO05D009021 6.7e-26 120.6 119 57.1
Thecc.02G178000 Theobroma cacao HOM05D005443 ORTHO05D009021 1.1e-25 119.8 119 54.6
TAR629G1996 Trochodendron aralioides HOM05D005443 ORTHO05D009021 1.5e-25 119.4 119 55.5
Cfa014602 Carpinus fangiana HOM05D005443 ORTHO05D009021 2.5e-25 118.6 119 58.0
Manes.12G087400 Manihot esculenta HOM05D005443 ORTHO05D009021 2.5e-25 118.6 119 53.8
CANSAT78G0275 Cannabis sativa HOM05D005443 ORTHO05D009021 3.3e-25 118.2 112 58.9
Lj3g0013365 Lotus japonicus HOM05D005443 ORTHO05D009021 4.3e-25 117.9 114 55.3
CSS0011007 Camellia sinensis var. sinensis HOM05D005443 ORTHO05D009021 5.6e-25 117.5 119 54.6
CSS0037968 Camellia sinensis var. sinensis HOM05D005443 ORTHO05D009021 5.6e-25 117.5 119 54.6
TWI75G0884 Tripterygium wilfordii HOM05D005443 ORTHO05D009021 5.6e-25 117.5 119 53.8
Gohir.A13G055900 Gossypium hirsutum HOM05D005443 ORTHO05D009021 7.4e-25 117.1 119 54.6
Gohir.D13G066100 Gossypium hirsutum HOM05D005443 ORTHO05D009021 7.4e-25 117.1 119 54.6
Gorai.013G075400 Gossypium raimondii HOM05D005443 ORTHO05D009021 7.4e-25 117.1 119 54.6
Hma1.2p1_1201F.1_g266690 Hydrangea macrophylla HOM05D005443 ORTHO05D009021 9.6e-25 116.7 119 52.9
Duzib052G1076 Durio zibethinus HOM05D005443 ORTHO05D009021 1.6e-24 115.9 112 57.1
Eucgr.A01810 Eucalyptus grandis HOM05D005443 ORTHO05D009021 1.6e-24 115.9 119 52.9
Prupe.3G135800 Prunus persica HOM05D005443 ORTHO05D009021 1.6e-24 115.9 101 64.4
TPR.G21753 Trifolium pratense HOM05D005443 ORTHO05D009021 2.1e-24 115.5 116 51.7
Actinidia11040 Actinidia chinensis HOM05D005443 ORTHO05D009021 1.1e-23 113.2 112 54.5
Glyma.06G293500 Glycine max HOM05D005443 ORTHO05D009021 1.4e-23 112.8 110 53.6
Nn1g04052 Nelumbo nucifera HOM05D005443 ORTHO05D009021 1.4e-23 112.8 115 54.8
Lalb_Chr19g0135291 Lupinus albus HOM05D005443 ORTHO05D009021 2.4e-23 112.1 111 55.9
Sopen07g028070 Solanum pennellii HOM05D005443 ORTHO05D009021 6.9e-23 110.5 119 50.4
CAN.G248.23 Capsicum annuum HOM05D005443 ORTHO05D009021 2.0e-22 109.0 119 49.6
PGSC0003DMG400018348 Solanum tuberosum HOM05D005443 ORTHO05D009021 4.5e-22 107.8 119 48.7
Aqoxy1G02515 Aquilegia oxysepala HOM05D005443 ORTHO05D009021 7.6e-22 107.1 119 50.4
VMungo1127G1015 Vigna mungo HOM05D005443 ORTHO05D009021 1.0e-21 106.7 110 51.8
Oeu017969.1 Olea europaea HOM05D005443 ORTHO05D009021 1.7e-21 105.9 119 50.4
Rhsim06G0144000 Rhododendron simsii HOM05D005443 ORTHO05D009021 3.8e-21 104.8 119 48.7
Cc05_g07040 Coffea canephora HOM05D005443 ORTHO05D009021 4.9e-21 104.4 118 50.0
vmacro12294 Vaccinium macrocarpon HOM05D005443 ORTHO05D009021 4.9e-21 104.4 113 52.2
EL10Ac9g20753 Beta vulgaris HOM05D005443 ORTHO05D009021 8.4e-21 103.6 119 45.4
Migut.H01082 Erythranthe guttata HOM05D005443 ORTHO05D009021 3.2e-20 101.7 113 50.4
SalBow7G3189 Salvia bowleyana HOM05D005443 ORTHO05D009021 3.2e-20 101.7 119 47.1
SalBow7G4211 Salvia bowleyana HOM05D005443 ORTHO05D009021 3.2e-20 101.7 119 47.1
arahy.Tifrunner.gnm1.ann1.0NFG0V Arachis hypogaea HOM05D005443 ORTHO05D009021 5.5e-20 100.9 112 48.2
MBI18_g16995_MAGBIO Magnolia biondii HOM05D005443 ORTHO05D009021 7.1e-20 100.5 119 47.9
Phvul.011G114600 Phaseolus vulgaris HOM05D005443 ORTHO05D009021 9.3e-20 100.1 110 48.2
HanXRQChr17g0553531 Helianthus annuus HOM05D005443 ORTHO05D009021 1.6e-19 99.4 119 46.2
Sc21g0002690 Simmondsia chinensis HOM05D005443 ORTHO05D009021 1.6e-19 99.4 119 47.1
Ah.01g015220 Amaranthus hybridus HOM05D005443 ORTHO05D009021 2.1e-19 99.0 112 46.4
MSTRG.12821 Avicennia marina HOM05D005443 ORTHO05D009021 4.6e-19 97.8 113 51.3
SGA_v2.0_scaffold109G31118 Striga asiatica HOM05D005443 ORTHO05D009021 6.0e-19 97.4 119 46.2
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 1.3e-18 96.3 118 46.6
unitig_62.g23169 Utricularia gibba HOM05D005443 ORTHO05D009021 4.3e-17 91.3 117 47.0
HPP92_025995 Vanilla planifolia HOM05D005443 ORTHO05D009021 4.3e-17 91.3 119 43.7
arahy.Tifrunner.gnm1.ann1.Y6HWTN Arachis hypogaea HOM05D005443 ORTHO05D009021 8.2e-16 87.0 108 44.4
CARHR111400 Cardamine hirsuta HOM05D005443 ORTHO05D009021 5.3e-15 84.3 115 40.0
Aa31LG8G17770 Aethionema arabicum HOM05D005443 ORTHO05D009021 1.2e-14 83.2 110 39.1
Sabra19G0111200 Salix brachista HOM05D005443 ORTHO05D009021 1.2e-14 83.2 90 51.1
Sabra19G0112500 Salix brachista HOM05D005443 ORTHO05D009021 3.4e-14 81.6 90 50.0
Thhalv10002053m.g Eutrema salsugineum HOM05D005443 ORTHO05D009021 5.9e-14 80.9 115 38.3
THA.LOC104814500 Tarenaya hassleriana HOM05D005443 ORTHO05D009021 5.9e-14 80.9 114 39.5
AL3G53840 Arabidopsis lyrata HOM05D005443 ORTHO05D009021 2.2e-13 79.0 109 37.6
A07p00040 Brassica napus HOM05D005443 ORTHO05D009021 2.2e-13 79.0 115 38.3
BraA07t27796Z Brassica rapa HOM05D005443 ORTHO05D009021 2.9e-13 78.6 115 38.3
C07p00180 Brassica napus HOM05D005443 ORTHO05D009021 5.0e-13 77.8 115 37.4
BcaC06g36763 Brassica carinata HOM05D005443 ORTHO05D009021 6.5e-13 77.4 119 36.1
BcaC06g36764 Brassica carinata HOM05D005443 ORTHO05D009021 6.5e-13 77.4 119 36.1
BolC7t40469H Brassica oleracea HOM05D005443 ORTHO05D009021 6.5e-13 77.4 119 36.1
AT2G20725 Arabidopsis thaliana HOM05D005443 ORTHO05D009021 8.5e-13 77.0 111 36.9
Sp3g33980 Schrenkiella parvula HOM05D005443 ORTHO05D009021 1.1e-12 76.6 115 36.5
ClCG07G002990 Citrullus lanatus HOM05D000092 ORTHO05D009021 1.4e-12 76.3 90 53.3
Carub.0003s3525 Capsella rubella HOM05D005443 ORTHO05D009021 2.5e-12 75.5 117 37.6
BcaB03g16866 Brassica carinata HOM05D005443 ORTHO05D009021 3.2e-12 75.1 119 36.1
Os07g0457550 Oryza sativa ssp. japonica HOM05D005443 ORTHO05D009021 4.2e-12 74.7 119 37.8
Zm00001eb306570 Zea mays HOM05D005443 ORTHO05D009021 1.6e-11 72.8 110 36.4
Prupe.3G135600 Prunus persica HOM05D005443 ORTHO05D009021 3.0e-10 68.6 42 85.7
Lsat_1_v5_gn_8_133320 Lactuca sativa HOM05D005443 ORTHO05D009021 3.3e-09 65.1 94 40.4
Ca_25912_v3 Cicer arietinum L. HOM05D005443 ORTHO05D009021 5.7e-09 64.3 82 45.1
Peaxi162Scf00132g00415 Petunia axillaris HOM05D005443 ORTHO05D009021 8.2e-08 60.5 87 42.5
Atru.chr6.3005 Acer truncatum HOM05D005443 ORTHO05D009021 1.1e-07 60.1 84 44.0
Pp3c3_11680 Physcomitrium patens HOM05D005443 ORTHO05D009021 1.1e-07 60.1 101 35.6
COL.COLO4_07390 Corchorus olitorius HOM05D005443 ORTHO05D009021 6.9e-07 57.4 36 72.2
Medtr0096s0020 Medicago truncatula HOM05D005443 ORTHO05D009021 2.6e-06 55.5 84 39.3
FvH4_6g26140 Fragaria vesca HOM05D005443 ORTHO05D009021 3.4e-06 55.1 36 72.2
Ciclev10017817m.g Citrus clementina HOM05D005443 ORTHO05D009021 7.7e-06 53.9 84 41.7


User provided reference genes

Program Settings