Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 1.7e-88 329.3 173 100.0
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 2.3e-64 249.2 174 79.9
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 2.3e-64 249.2 176 77.8
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 2.3e-64 249.2 177 79.1
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 5.1e-64 248.1 178 77.5
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 1.1e-63 246.9 177 78.0
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 1.1e-63 246.9 177 78.0
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 1.1e-63 246.9 177 78.5
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 1.5e-63 246.5 178 77.0
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 4.3e-63 245.0 179 77.1
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 1.3e-62 243.4 178 77.0
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.3e-62 243.4 173 76.9
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 1.6e-62 243.0 174 76.4
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 2.1e-62 242.7 178 75.8
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 2.8e-62 242.3 174 76.4
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 3.7e-62 241.9 174 75.9
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 3.7e-62 241.9 178 76.4
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 6.2e-62 241.1 179 76.5
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.1e-61 240.4 179 76.5
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 2.4e-61 239.2 178 77.0
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 2.4e-61 239.2 177 79.1
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 6.9e-61 237.7 174 73.6
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 9.0e-61 237.3 176 77.8
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 2.0e-60 236.1 176 75.0
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 2.6e-60 235.7 174 74.7
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 2.6e-60 235.7 177 76.8
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 5.8e-60 234.6 173 73.4
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.3e-59 233.4 186 73.7
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.3e-59 233.4 176 75.0
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 2.2e-59 232.6 173 74.0
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 2.9e-59 232.3 179 74.9
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 3.8e-59 231.9 174 73.6
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 3.8e-59 231.9 178 73.6
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 4.9e-59 231.5 175 74.3
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 4.9e-59 231.5 172 74.4
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 4.9e-59 231.5 177 71.2
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 6.5e-59 231.1 175 73.7
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 8.4e-59 230.7 178 73.0
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 1.1e-58 230.3 173 74.0
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 1.4e-58 229.9 175 72.6
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 3.2e-58 228.8 176 72.2
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 5.5e-58 228.0 176 72.2
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 7.1e-58 227.6 177 73.4
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 7.1e-58 227.6 174 73.0
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 7.1e-58 227.6 175 72.0
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 1.2e-57 226.9 175 75.4
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 1.2e-57 226.9 175 75.4
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.2e-57 226.9 175 73.1
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 2.1e-57 226.1 174 73.6
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 3.5e-57 225.3 172 71.5
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 4.6e-57 224.9 171 74.3
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 6.0e-57 224.6 176 70.5
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 6.0e-57 224.6 171 70.2
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 6.0e-57 224.6 171 70.2
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 6.0e-57 224.6 171 73.7
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 7.9e-57 224.2 177 71.8
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 1.0e-56 223.8 176 73.3
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 1.0e-56 223.8 171 69.6
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.3e-56 223.4 176 71.6
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 1.3e-56 223.4 173 71.7
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 3.0e-56 222.2 175 71.4
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 3.0e-56 222.2 176 71.6
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 3.0e-56 222.2 176 71.6
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 3.0e-56 222.2 175 73.7
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 3.0e-56 222.2 174 72.4
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 3.9e-56 221.9 174 73.0
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 5.1e-56 221.5 176 71.0
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 5.1e-56 221.5 173 72.3
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 6.7e-56 221.1 177 69.5
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 6.7e-56 221.1 178 73.6
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 1.1e-55 220.3 177 68.9
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 1.1e-55 220.3 177 71.2
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 1.1e-55 220.3 177 71.2
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 1.9e-55 219.5 173 68.8
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 1.9e-55 219.5 173 74.6
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 2.5e-55 219.2 177 68.9
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 3.3e-55 218.8 175 69.7
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 4.3e-55 218.4 176 70.5
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 4.3e-55 218.4 177 72.3
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 4.3e-55 218.4 177 70.1
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 5.7e-55 218.0 176 70.5
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 7.4e-55 217.6 175 74.3
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 7.4e-55 217.6 175 69.1
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 1.6e-54 216.5 183 68.9
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 2.8e-54 215.7 179 67.0
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 3.7e-54 215.3 176 69.3
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 1.1e-53 213.8 175 71.4
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 1.4e-53 213.4 176 68.8
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 1.4e-53 213.4 176 68.8
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 1.8e-53 213.0 177 68.4
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 2.4e-53 212.6 182 67.0
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 2.4e-53 212.6 176 68.8
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 5.3e-53 211.5 175 69.1
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.2e-52 210.3 150 75.3
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 1.5e-52 209.9 172 67.4
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 1.5e-52 209.9 175 68.0
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 2.6e-52 209.1 187 66.3
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 3.4e-52 208.8 179 69.3
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 3.4e-52 208.8 179 69.3
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 4.5e-52 208.4 171 67.3
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 7.6e-52 207.6 174 67.8
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 1.7e-51 206.5 173 67.1
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 1.7e-51 206.5 171 67.3
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 1.7e-51 206.5 175 65.1
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 2.9e-51 205.7 175 65.7
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 2.9e-51 205.7 171 66.1
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 2.9e-51 205.7 171 65.5
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 1.2e-49 200.3 173 61.3
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 1.8e-48 196.4 180 63.9
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 3.0e-48 195.7 180 64.4
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 1.1e-47 193.7 181 65.2
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 3.1e-45 185.7 130 74.6
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 1.2e-44 183.7 171 59.6
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 5.9e-44 181.4 176 63.1
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 5.9e-44 181.4 176 63.1
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 1.7e-43 179.9 154 64.3
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 2.2e-43 179.5 149 72.5
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 3.2e-42 175.6 145 65.5
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 7.2e-42 174.5 158 61.4
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 1.6e-41 173.3 150 72.0
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 4.6e-41 171.8 146 67.8
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 5.3e-37 158.3 147 67.3
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 1.7e-35 153.3 146 65.1
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 3.8e-35 152.1 159 53.5
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 9.4e-34 147.5 82 80.5
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 1.6e-33 146.7 143 62.2
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 7.4e-31 137.9 133 59.4
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 1.1e-29 134.0 74 86.5
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 3.1e-29 132.5 74 85.1
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 3.1e-29 132.5 72 87.5
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 9.1e-29 131.0 133 66.2
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 1.2e-28 130.6 74 83.8
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 8.8e-24 114.4 165 44.2
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 4.1e-21 105.5 94 64.9
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 5.3e-21 105.1 134 47.8
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.6e-20 103.6 172 44.2
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 2.0e-20 103.2 74 68.9
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 3.4e-15 85.9 106 59.4
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 3.4e-15 85.9 89 55.1
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 4.4e-15 85.5 111 56.8
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 7.5e-15 84.7 99 52.5
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 9.8e-15 84.3 119 54.6
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 2.4e-13 79.7 148 39.9
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 1.6e-12 77.0 106 54.7
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 6.5e-11 71.6 104 52.9
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 5.2e-08 62.0 30 86.7


User provided reference genes

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