Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 4.3e-235 817.8 462 100.0
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 4.1e-217 758.1 462 94.2
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 7.9e-205 717.2 462 89.0
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 6.7e-204 714.1 461 88.7
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 2.4e-201 705.7 462 88.3
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 4.1e-201 704.9 462 87.2
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 6.9e-201 704.1 462 87.0
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 9.1e-201 703.7 462 86.8
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 9.1e-201 703.7 462 85.9
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 2.9e-199 698.7 462 86.1
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 7.2e-198 694.1 462 85.3
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 7.2e-198 694.1 462 85.3
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 4.7e-197 691.4 462 85.7
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 7.9e-197 690.6 462 85.7
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.0e-196 690.3 462 84.6
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.3e-196 689.1 462 84.8
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 2.0e-195 686.0 459 84.3
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 3.3e-195 685.3 459 83.0
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 4.4e-195 684.9 464 84.1
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 7.4e-195 684.1 459 84.7
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 7.4e-195 684.1 462 81.6
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.3e-194 683.3 461 84.2
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 2.4e-193 679.1 463 84.4
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 3.1e-193 678.7 461 82.6
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 5.3e-193 677.9 462 84.0
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 9.1e-193 677.2 459 81.9
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 4.5e-192 674.9 459 83.9
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 7.7e-192 674.1 459 81.9
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.2e-191 672.5 459 81.0
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 5.0e-191 671.4 464 76.7
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 1.5e-190 669.8 441 88.2
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.5e-190 669.8 462 81.2
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 2.5e-190 669.1 460 83.3
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 9.4e-190 667.2 459 83.0
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 1.6e-189 666.4 504 73.0
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.1e-189 666.0 460 83.7
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 2.1e-189 666.0 459 75.4
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 2.1e-189 666.0 459 75.4
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 2.1e-189 666.0 459 82.8
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 2.1e-189 666.0 459 81.3
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 3.6e-189 665.2 460 83.0
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 6.1e-189 664.5 465 82.8
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.3e-188 662.5 460 83.3
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.3e-188 662.5 462 81.4
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 4.0e-188 661.8 458 80.6
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 2.0e-187 659.4 454 81.7
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 3.3e-187 658.7 460 80.2
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 4.4e-187 658.3 462 81.4
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 1.7e-186 656.4 462 80.5
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 2.8e-186 655.6 460 81.3
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 1.1e-185 653.7 463 81.4
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 5.3e-185 651.4 462 81.2
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 7.0e-185 651.0 462 80.1
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 9.1e-185 650.6 462 81.0
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.2e-184 650.2 463 79.3
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 1.2e-184 650.2 460 81.1
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.7e-184 649.0 551 72.6
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 1.9e-182 642.9 462 79.0
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 4.2e-182 641.7 462 80.3
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 5.5e-182 641.3 462 80.5
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 9.4e-182 640.6 466 79.2
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 2.1e-181 639.4 462 80.5
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 3.6e-181 638.6 462 79.0
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 4.7e-181 638.3 462 80.3
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 8.0e-181 637.5 462 80.3
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 1.8e-180 636.3 462 79.0
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 1.7e-178 629.8 460 79.1
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 2.8e-178 629.0 464 79.5
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 3.7e-178 628.6 460 79.1
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 4.8e-178 628.2 464 79.1
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 6.3e-178 627.9 459 79.1
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 3.1e-177 625.5 459 76.5
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 3.5e-176 622.1 462 74.9
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 1.7e-175 619.8 462 77.3
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 8.5e-175 617.5 459 76.9
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 2.5e-174 615.9 493 73.8
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 9.4e-174 614.0 483 73.7
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 3.6e-173 612.1 476 74.8
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.6e-171 605.9 462 75.8
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 3.4e-171 605.5 463 76.0
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.7e-170 603.2 462 77.3
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.7e-170 602.1 462 75.3
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.4e-169 598.2 462 76.0
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 5.9e-168 594.7 462 74.9
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.3e-166 589.0 462 74.7
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 5.6e-166 588.2 466 69.1
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 7.3e-166 587.8 461 74.6
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.2e-165 587.0 461 73.5
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 1.2e-165 587.0 456 76.3
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 2.1e-165 586.3 462 69.0
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 1.8e-164 583.2 456 75.9
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.8e-164 583.2 462 73.2
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 3.0e-164 582.4 456 75.9
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 5.2e-164 581.6 466 73.8
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 8.9e-164 580.9 456 75.2
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 5.7e-163 578.2 387 76.5
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 7.5e-163 577.8 388 77.1
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 5.4e-161 571.6 387 76.0
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 5.0e-159 565.1 463 64.6
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 2.1e-157 559.7 382 84.8
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 2.3e-156 556.2 389 74.6
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 7.5e-155 551.2 462 70.8
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.6e-152 543.5 460 71.3
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 2.3e-151 539.7 388 72.7
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 2.3e-151 539.7 459 69.9
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 1.5e-147 526.9 461 67.7
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 4.9e-146 521.9 496 66.7
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 2.4e-145 519.6 384 79.4
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 5.1e-143 511.9 462 62.3
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 6.8e-140 501.5 463 66.3
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 2.0e-139 500.0 462 65.6
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 1.9e-137 493.4 462 68.0
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 4.2e-121 439.1 463 59.0
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 2.0e-115 420.2 364 61.8
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.5e-115 419.1 466 54.3
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 2.4e-108 396.7 300 69.3
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 1.4e-105 387.5 462 51.9
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 9.0e-100 368.2 319 65.8
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 4.1e-84 316.2 291 70.1
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 4.8e-69 266.2 460 43.0
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.3e-66 258.1 409 39.6
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.8e-60 237.7 242 55.4
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 5.9e-59 232.6 189 70.4
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 5.9e-51 206.1 514 38.5
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 2.3e-47 194.1 400 32.2
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 5.2e-47 193.0 122 82.0
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 5.2e-47 193.0 163 65.0
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.2e-44 183.7 123 74.8
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 9.2e-44 182.2 134 69.4
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 1.3e-42 178.3 121 80.2
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 8.0e-40 169.1 506 33.4
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.1e-32 144.4 156 55.8
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 3.4e-30 137.1 220 41.8
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 2.1e-27 127.9 94 72.3
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 3.2e-20 104.0 68 79.4
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 1.6e-19 101.7 101 86.1
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 5.1e-18 96.7 55 90.9
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 5.1e-18 96.7 117 48.7
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 6.4e-13 79.7 60 65.0
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 2.4e-12 77.8 104 48.1
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 9.3e-12 75.9 78 57.7
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 6.0e-11 73.2 61 60.7
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 1.3e-10 72.0 67 53.7
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 3.9e-10 70.5 62 59.7
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 8.7e-10 69.3 97 47.4
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 1.9e-09 68.2 49 79.6
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 1.6e-08 65.1 49 69.4
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 3.6e-08 63.9 407 21.9
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 6.2e-08 63.2 260 28.1
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 8.1e-08 62.8 407 21.6
Psat1g145560 Pisum sativum HOM05D005230 ORTHO05D006506 1.8e-07 61.6 114 37.7
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 3.1e-07 60.8 407 21.4
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 3.1e-07 60.8 410 21.7
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 6.9e-07 59.7 412 21.8
CARHR129130 Cardamine hirsuta HOM05D004145 ORTHO05D004879 1.5e-06 58.5 247 26.7
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 2.0e-06 58.2 249 25.7
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 2.0e-06 58.2 249 25.7
GSVIVG01026774001 Vitis vinifera HOM05D004145 ORTHO05D004879 2.0e-06 58.2 247 24.7
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 2.6e-06 57.8 55 56.4
Nitab4.5_0000245g0100 Nicotiana tabacum HOM05D004145 ORTHO05D004879 2.6e-06 57.8 247 26.3
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 4.5e-06 57.0 265 25.3
AagrBONN_evm.TU.Sc2ySwM_228.295 Anthoceros agrestis HOM05D004145 ORTHO05D004879 7.6e-06 56.2 281 27.8
PSO541G4045 Papaver somniferum HOM05D004145 ORTHO05D004879 7.6e-06 56.2 404 22.5


User provided reference genes

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