Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 1.6e-32 143.3 154 100.0
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 1.5e-19 100.1 71 74.6
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 7.6e-19 97.8 68 75.0
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 2.2e-18 96.3 67 74.6
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 2.9e-18 95.9 71 67.6
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 2.9e-18 95.9 71 73.2
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 3.8e-18 95.5 55 83.6
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 3.8e-18 95.5 71 67.6
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 4.9e-18 95.1 58 79.3
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 8.4e-18 94.4 71 66.2
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 1.1e-17 94.0 154 74.0
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 1.9e-17 93.2 58 81.0
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 1.9e-17 93.2 61 75.4
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 2.4e-17 92.8 71 73.2
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 2.4e-17 92.8 152 82.2
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 3.2e-17 92.4 71 71.8
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 3.2e-17 92.4 154 81.8
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 4.2e-17 92.0 65 73.8
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 4.2e-17 92.0 65 73.8
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 4.2e-17 92.0 71 71.8
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 7.1e-17 91.3 65 72.3
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 7.1e-17 91.3 71 69.0
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 9.3e-17 90.9 65 72.3
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 1.2e-16 90.5 71 70.4
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 1.2e-16 90.5 71 70.4
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 1.2e-16 90.5 71 67.6
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 2.1e-16 89.7 154 78.6
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 2.1e-16 89.7 71 69.0
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 2.1e-16 89.7 71 69.0
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 2.7e-16 89.4 71 64.8
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 2.7e-16 89.4 138 89.1
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 3.5e-16 89.0 56 80.4
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 6.0e-16 88.2 55 78.2
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 7.9e-16 87.8 69 69.6
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 7.9e-16 87.8 69 69.6
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 7.9e-16 87.8 71 63.4
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 1.3e-15 87.0 80 62.5
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 1.3e-15 87.0 69 65.2
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 1.3e-15 87.0 71 63.4
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 2.3e-15 86.3 53 81.1
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 2.3e-15 86.3 63 69.8
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 2.3e-15 86.3 156 75.6
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 3.0e-15 85.9 51 82.4
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 3.0e-15 85.9 51 82.4
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 3.9e-15 85.5 71 63.4
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 3.9e-15 85.5 52 80.8
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 3.9e-15 85.5 154 69.5
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 5.1e-15 85.1 50 86.0
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 5.1e-15 85.1 65 69.2
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 8.7e-15 84.3 67 70.1
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 1.5e-14 83.6 137 86.9
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 1.5e-14 83.6 65 67.7
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 1.5e-14 83.6 60 71.7
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 1.5e-14 83.6 71 62.0
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 1.9e-14 83.2 61 67.2
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 3.3e-14 82.4 62 66.1
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 3.3e-14 82.4 71 63.4
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 3.3e-14 82.4 60 70.0
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 4.3e-14 82.0 53 77.4
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 4.3e-14 82.0 65 67.7
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 4.3e-14 82.0 65 66.2
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 4.3e-14 82.0 53 77.4
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 5.6e-14 81.6 71 62.0
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 1.3e-13 80.5 53 75.5
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 1.3e-13 80.5 53 77.4
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 2.1e-13 79.7 71 62.0
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 2.1e-13 79.7 68 57.4
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 2.8e-13 79.3 53 71.7
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 3.6e-13 79.0 60 70.0
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 4.8e-13 78.6 56 66.1
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 4.8e-13 78.6 68 63.2
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 1.1e-12 77.4 53 73.6
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 1.1e-12 77.4 53 73.6
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 1.1e-12 77.4 53 73.6
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 1.1e-12 77.4 53 73.6
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 1.1e-12 77.4 66 57.6
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 1.8e-12 76.6 63 65.1
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 2.4e-12 76.3 66 60.6
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 2.4e-12 76.3 55 72.7
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 4.0e-12 75.5 53 69.8
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 4.0e-12 75.5 66 60.6
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 6.9e-12 74.7 60 63.3
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 1.5e-11 73.6 50 72.0
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 2.0e-11 73.2 55 69.1
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 2.6e-11 72.8 62 62.9
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 5.8e-11 71.6 59 69.5
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 7.6e-11 71.2 61 63.9
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 9.9e-11 70.9 46 69.6
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 1.3e-10 70.5 50 70.0
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 1.3e-10 70.5 71 53.5
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 2.9e-10 69.3 63 55.6
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 1.1e-09 67.4 71 53.5
QL01p017309 Quercus lobata HOM05D007144 ORTHO05D008709 1.4e-09 67.0 68 54.4
TWI23G1223 Tripterygium wilfordii HOM05D007144 ORTHO05D008709 1.4e-09 67.0 60 60.0
Lalb_Chr18g0054451 Lupinus albus HOM05D007144 ORTHO05D008709 3.2e-09 65.9 49 69.4
Phvul.006G021300 Phaseolus vulgaris HOM05D007144 ORTHO05D008709 2.1e-08 63.2 39 76.9
PGR102G1924 Punica granatum HOM05D007144 ORTHO05D008709 3.5e-08 62.4 59 61.0
Nn7g36693 Nelumbo nucifera HOM05D007144 ORTHO05D008709 4.6e-08 62.0 53 60.4
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 3.0e-07 59.3 48 58.3
Lj1A285T18 Lonicera japonica HOM05D007144 ORTHO05D008709 1.9e-06 56.6 32 87.5


User provided reference genes

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