Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 6.5e-121 437.6 246 100.0
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 2.1e-103 379.4 247 83.8
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 4.1e-99 365.2 244 85.2
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.0e-93 346.3 223 82.5
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 2.4e-91 339.3 250 76.8
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 9.1e-91 337.4 225 83.1
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.6e-90 335.9 250 74.4
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 7.7e-90 334.3 225 82.2
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.7e-87 325.9 248 71.8
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 4.7e-87 325.1 247 74.9
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 1.0e-86 323.9 245 69.4
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 4.4e-85 318.5 246 69.1
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 1.7e-84 316.6 243 69.1
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 7.0e-83 311.2 244 68.9
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 2.0e-82 309.7 245 69.4
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 4.5e-82 308.5 243 67.1
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 2.2e-81 306.2 248 73.4
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.5e-80 303.5 248 67.7
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 2.5e-80 302.8 248 70.2
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 5.5e-80 301.6 249 64.3
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 6.1e-79 298.1 219 70.8
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 1.8e-78 296.6 241 68.9
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 3.4e-77 292.4 249 65.5
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 6.3e-76 288.1 240 65.8
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 8.3e-76 287.7 248 62.9
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.4e-75 287.0 242 69.0
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 3.1e-75 285.8 247 60.7
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 4.1e-75 285.4 245 69.8
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 4.1e-75 285.4 206 76.2
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 4.1e-75 285.4 248 69.8
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 4.1e-75 285.4 234 67.9
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 5.4e-75 285.0 249 61.4
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.2e-74 283.9 246 62.2
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.6e-74 283.5 264 58.7
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.7e-74 282.7 249 67.5
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 4.5e-74 282.0 249 67.1
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 5.9e-74 281.6 250 63.2
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 1.0e-73 280.8 236 66.9
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 2.9e-73 279.3 234 62.0
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 3.8e-73 278.9 249 61.4
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 4.2e-72 275.4 253 58.1
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 5.5e-72 275.0 224 64.7
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 7.2e-72 274.6 224 64.3
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 9.4e-72 274.2 248 66.5
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.2e-71 273.9 249 59.8
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.4e-70 270.4 217 62.7
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 2.3e-70 269.6 251 59.0
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 6.8e-70 268.1 195 68.7
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.2e-69 267.3 199 66.8
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 1.5e-69 266.9 206 71.4
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.6e-69 266.2 243 59.3
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 3.4e-69 265.8 251 61.4
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 3.4e-69 265.8 248 59.3
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 7.5e-69 264.6 255 60.4
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 7.5e-69 264.6 241 63.1
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.1e-67 260.8 207 73.9
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 4.1e-67 258.8 233 69.1
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 4.1e-67 258.8 207 74.4
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 5.4e-67 258.5 207 68.1
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 7.0e-67 258.1 237 62.9
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 2.0e-66 256.5 210 63.3
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.7e-66 256.1 233 57.5
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.9e-66 255.0 252 61.9
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 5.9e-66 255.0 252 61.5
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 7.7e-66 254.6 257 62.6
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.3e-65 253.8 252 62.3
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 1.7e-65 253.4 267 56.6
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 1.7e-65 253.4 253 56.5
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.1e-64 250.8 233 58.4
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 1.5e-64 250.4 303 55.4
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 2.5e-64 249.6 220 66.4
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.5e-64 249.6 251 57.0
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 2.5e-64 249.6 214 61.7
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 3.3e-64 249.2 238 59.2
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 3.3e-64 249.2 253 54.9
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 7.3e-64 248.1 267 56.2
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 1.2e-63 247.3 218 64.7
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.6e-63 246.9 189 67.7
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 2.8e-63 246.1 174 75.9
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 2.8e-63 246.1 248 56.0
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 3.6e-63 245.7 255 61.2
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.0e-62 244.2 250 54.4
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 1.8e-62 243.4 214 60.3
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 1.8e-62 243.4 214 60.3
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 3.0e-62 242.7 175 80.0
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 5.2e-62 241.9 253 55.7
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 1.2e-61 240.7 222 62.2
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 1.5e-61 240.4 176 72.2
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.0e-61 240.0 233 58.8
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 4.4e-61 238.8 236 58.1
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.7e-60 236.9 282 53.5
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.7e-60 236.9 203 62.6
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 3.7e-60 235.7 253 55.7
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 6.4e-60 235.0 238 57.6
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 1.4e-59 233.8 234 62.8
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.4e-59 233.8 261 51.7
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 7.0e-59 231.5 237 62.4
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 9.2e-59 231.1 236 53.8
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 5.6e-56 221.9 203 57.1
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 1.2e-55 220.7 176 67.6
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 2.1e-55 219.9 221 55.2
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 1.0e-54 217.6 258 58.5
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 8.9e-54 214.5 248 50.0
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 8.9e-54 214.5 248 50.0
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 8.9e-54 214.5 248 50.0
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 8.9e-54 214.5 233 52.4
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.2e-53 214.2 258 48.8
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 1.5e-53 213.8 239 55.6
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.3e-52 210.7 258 53.9
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.3e-52 210.7 259 48.3
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 1.7e-52 210.3 258 52.7
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 4.9e-52 208.8 238 55.0
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.4e-51 207.2 223 57.0
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 5.4e-51 205.3 242 49.2
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 2.7e-50 203.0 260 50.8
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 7.8e-50 201.4 197 58.9
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 2.3e-49 199.9 183 54.1
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 3.9e-49 199.1 198 55.6
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 8.6e-49 198.0 249 48.2
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 3.3e-48 196.1 259 45.6
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 5.6e-48 195.3 247 51.4
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 2.1e-47 193.4 193 61.1
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 8.1e-47 191.4 259 44.8
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.4e-46 190.7 179 58.7
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 2.3e-46 189.9 177 64.4
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 1.5e-45 187.2 138 76.8
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 1.5e-45 187.2 108 82.4
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 2.0e-45 186.8 261 44.1
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.6e-45 186.4 203 47.8
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 3.4e-45 186.0 197 53.8
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 7.5e-45 184.9 202 51.5
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.3e-41 174.1 117 67.5
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 2.3e-41 173.3 148 55.4
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.1e-40 171.0 175 53.7
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.9e-40 170.2 198 50.5
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 3.6e-39 166.0 188 47.3
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 1.2e-37 161.0 197 45.7
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 2.9e-36 156.4 265 40.4
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.1e-35 152.5 139 64.0
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.7e-33 147.1 130 63.8
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 3.9e-33 146.0 123 57.7
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 5.1e-33 145.6 140 60.0
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 1.2e-31 141.0 159 59.1
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.7e-31 139.0 104 62.5
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 8.1e-31 138.3 153 47.7
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.8e-30 137.1 153 63.4
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.2e-29 134.4 148 68.9
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.5e-29 134.0 140 71.4
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 3.8e-28 129.4 133 63.2
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 6.0e-26 122.1 170 40.6
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 1.9e-24 117.1 243 38.3
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 4.3e-24 115.9 258 38.8
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 3.6e-23 112.8 149 61.7
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 7.6e-21 105.1 87 55.2
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 9.9e-21 104.8 97 64.9
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 1.7e-20 104.0 110 41.8
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 2.9e-20 103.2 78 55.1
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 6.4e-20 102.1 161 43.5
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 3.5e-18 96.3 101 65.3
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 2.8e-15 86.7 134 50.7
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 6.9e-14 82.0 87 70.1
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 4.5e-13 79.3 68 60.3
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 2.2e-12 77.0 81 49.4
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 4.9e-12 75.9 66 65.2
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 1.9e-11 73.9 94 42.6
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.6e-10 70.9 48 60.4
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 7.9e-10 68.6 66 50.0
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.5e-08 64.3 71 54.9
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.5e-08 63.5 49 55.1
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 4.3e-08 62.8 90 44.4
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 5.6e-08 62.4 90 43.3
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.7e-07 59.7 80 43.8
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.1e-06 58.2 49 73.5
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 1.1e-06 58.2 49 73.5
MBI14_g20318_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D017722 6.9e-06 55.5 33 66.7
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 9.0e-06 55.1 51 47.1


User provided reference genes

Program Settings